Wall clock time and date at job start Tue Mar 31 2020 22:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47028 * 2 1 4 4 C 1.35719 * 116.99921 * 180.02562 * 3 2 1 5 5 C 1.38892 * 120.15863 * 269.98047 * 4 3 2 6 6 F 1.35103 * 119.97742 * 0.04385 * 5 4 3 7 7 C 1.38231 * 120.04975 * 180.02562 * 5 4 3 8 8 C 1.38576 * 120.37432 * 0.02754 * 7 5 4 9 9 C 1.37748 * 120.32088 * 359.66912 * 8 7 5 10 10 C 1.39806 * 119.94317 * 0.60350 * 9 8 7 11 11 C 1.47444 * 120.18420 * 179.69595 * 10 9 8 12 12 O 1.21619 * 119.99671 * 142.46449 * 11 10 9 13 13 N 1.34773 * 119.99979 * 322.74181 * 11 10 9 14 14 C 1.36898 * 120.00130 * 186.13964 * 13 11 10 15 15 H 1.08001 * 120.00684 * 135.57545 * 14 13 11 16 16 C 1.39025 * 119.99998 * 315.57855 * 14 13 11 17 17 N 1.31383 * 119.99947 * 339.36738 * 16 14 13 18 18 Si 1.86794 * 120.00232 * 159.37074 * 16 14 13 19 19 H 1.48500 * 109.47435 * 65.00012 * 18 16 14 20 20 H 1.48507 * 109.47123 * 185.00155 * 18 16 14 21 21 H 1.48502 * 109.46924 * 304.99984 * 18 16 14 22 22 C 1.46500 * 119.99886 * 6.13752 * 13 11 10 23 23 C 1.53001 * 109.47236 * 105.83112 * 22 13 11 24 24 C 1.50699 * 109.47425 * 179.97438 * 23 22 13 25 25 O 1.20827 * 119.99954 * 0.02562 * 24 23 22 26 26 O 1.34232 * 120.00002 * 179.97438 * 24 23 22 27 27 C 1.45198 * 116.99978 * 180.02562 * 26 24 23 28 28 H 1.09005 * 109.46991 * 299.99806 * 1 2 3 29 29 H 1.09006 * 109.47267 * 59.99166 * 1 2 3 30 30 H 1.08993 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46887 * 240.00973 * 2 1 3 32 32 H 1.08994 * 109.47409 * 120.00504 * 2 1 3 33 33 H 1.07994 * 119.81557 * 179.97438 * 7 5 4 34 34 H 1.07998 * 119.83878 * 179.97438 * 8 7 5 35 35 H 1.08003 * 120.02375 * 180.30019 * 9 8 7 36 36 H 0.96992 * 120.00289 * 185.03827 * 17 16 14 37 37 H 1.09006 * 109.47203 * 225.82742 * 22 13 11 38 38 H 1.08995 * 109.47703 * 345.83326 * 22 13 11 39 39 H 1.08994 * 109.47316 * 300.00309 * 23 22 13 40 40 H 1.09003 * 109.47084 * 59.99950 * 23 22 13 41 41 H 1.09000 * 109.47078 * 300.00679 * 27 26 24 42 42 H 1.09003 * 109.46732 * 60.00306 * 27 26 24 43 43 H 1.08999 * 109.46909 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5251 -0.0005 5 6 4.0440 1.6168 1.2001 6 9 3.3776 1.5280 2.3720 7 6 5.4143 1.7984 1.1969 8 6 6.1062 1.8908 -0.0002 9 6 5.4359 1.7957 -1.1999 10 6 4.0492 1.6177 -1.2123 11 6 3.3256 1.5220 -2.4934 12 8 2.3889 0.7545 -2.6067 13 7 3.7056 2.2808 -3.5403 14 6 2.9596 2.2864 -4.6882 15 1 2.7384 3.2200 -5.1841 16 6 2.4867 1.0902 -5.2157 17 7 3.0589 -0.0453 -4.8849 18 14 1.0380 1.0973 -6.3948 19 1 1.4194 1.8049 -7.6434 20 1 0.6541 -0.3009 -6.7157 21 1 -0.1113 1.7935 -5.7626 22 6 4.9169 3.0998 -3.4499 23 6 6.0305 2.4567 -4.2789 24 6 7.2763 3.2994 -4.1865 25 8 7.2740 4.3105 -3.5250 26 8 8.3889 2.9263 -4.8382 27 6 9.5514 3.7858 -4.7035 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9487 1.8696 2.1327 34 1 7.1767 2.0332 0.0074 35 1 5.9805 1.8636 -2.1301 36 1 2.7775 -0.8715 -5.3079 37 1 4.7094 4.0990 -3.8333 38 1 5.2324 3.1684 -2.4089 39 1 6.2379 1.4576 -3.8957 40 1 5.7150 2.3881 -5.3201 41 1 9.3125 4.7813 -5.0778 42 1 9.8352 3.8510 -3.6531 43 1 10.3789 3.3705 -5.2787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:55 Heat of formation + Delta-G solvation = -141.412951 kcal Electronic energy + Delta-G solvation = -30914.528195 eV Core-core repulsion = 26455.733227 eV Total energy + Delta-G solvation = -4458.794967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.62745 -40.40355 -39.79017 -37.90052 -36.95048 -36.38207 -34.62101 -32.51073 -31.46413 -30.49177 -30.28288 -28.98088 -27.58121 -25.33297 -24.00717 -22.97061 -22.55340 -21.91248 -20.48657 -19.75448 -17.81675 -17.54255 -17.42828 -16.43572 -16.42884 -16.37189 -16.04444 -15.55575 -15.19130 -15.11203 -14.66336 -14.50884 -14.25708 -13.94562 -13.72905 -13.50280 -13.33105 -12.85875 -12.76000 -12.51079 -12.28098 -12.09418 -11.89970 -11.70040 -11.59251 -11.47982 -11.18192 -11.11290 -10.90933 -10.87632 -10.71981 -10.68288 -10.50158 -10.31862 -10.14741 -9.32334 -8.87807 -8.58600 -8.29872 -8.14050 -7.27241 -6.24506 -3.97397 1.18001 1.29936 2.42715 2.88186 3.25515 3.33407 3.38437 3.45869 4.05080 4.17582 4.28645 4.60690 4.76644 4.96511 5.09861 5.10940 5.16877 5.18102 5.19203 5.37656 5.46747 5.49871 5.51271 5.56184 5.65540 5.68740 5.74852 5.89250 6.00829 6.12583 6.20400 6.23924 6.34507 6.41612 6.50549 6.51608 6.52759 6.58289 6.68345 6.90129 7.51924 7.93642 7.94408 8.15135 8.88456 9.01191 9.48627 10.12155 10.83025 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007971 B = 0.005989 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3511.985095 B = 4673.859132 C = 7782.781695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 O -0.319 6.319 4 C 0.103 3.897 5 C 0.069 3.931 6 F -0.137 7.137 7 C -0.144 4.144 8 C -0.106 4.106 9 C -0.112 4.112 10 C -0.090 4.090 11 C 0.511 3.489 12 O -0.509 6.509 13 N -0.438 5.438 14 C -0.353 4.353 15 H 0.082 0.918 16 C 0.078 3.922 17 N -0.820 5.820 18 Si 0.913 3.087 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.095 3.905 23 C -0.126 4.126 24 C 0.463 3.537 25 O -0.512 6.512 26 O -0.361 6.361 27 C 0.034 3.966 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.267 0.733 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.122 0.878 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 1.960 5.619 10.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.006 4.006 3 O -0.236 6.236 4 C 0.057 3.943 5 C 0.049 3.951 6 F -0.116 7.116 7 C -0.164 4.164 8 C -0.124 4.124 9 C -0.131 4.131 10 C -0.095 4.095 11 C 0.299 3.701 12 O -0.385 6.385 13 N -0.159 5.159 14 C -0.479 4.479 15 H 0.100 0.900 16 C -0.134 4.134 17 N -0.452 5.452 18 Si 0.740 3.260 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.029 4.029 23 C -0.165 4.165 24 C 0.306 3.694 25 O -0.400 6.400 26 O -0.278 6.278 27 C -0.060 4.060 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.412 1.773 5.794 10.367 hybrid contribution -0.260 -0.053 -0.353 0.441 sum 8.151 1.720 5.442 9.951 Atomic orbital electron populations 1.21659 0.93667 1.01853 1.02835 1.22778 0.95312 0.81580 1.00947 1.85925 1.15757 1.27944 1.93949 1.18565 0.84507 1.01353 0.89906 1.17989 0.90428 1.06055 0.80651 1.91460 1.80894 1.93921 1.45315 1.21019 0.91698 1.03862 0.99802 1.20897 1.00071 1.00173 0.91262 1.21814 0.93384 0.98673 0.99201 1.20952 0.93765 0.99508 0.95253 1.17524 0.85413 0.85520 0.81673 1.90606 1.29546 1.36411 1.81981 1.43066 1.19775 1.41227 1.11792 1.18981 1.32408 0.93413 1.03094 0.89991 1.25244 0.97145 0.94975 0.96075 1.69805 1.38101 0.98790 1.38481 0.86269 0.82874 0.77221 0.79684 1.20406 1.21140 1.19752 1.21905 0.85661 0.95395 0.99981 1.21934 0.88606 0.99236 1.06676 1.24254 0.84788 0.84907 0.75405 1.90642 1.84315 1.26005 1.39079 1.86572 1.21216 1.52515 1.67506 1.23202 0.85692 0.94567 1.02500 0.92679 0.91182 0.91248 0.90051 0.94585 0.84715 0.84942 0.83790 0.92298 0.91416 0.89205 0.87615 0.86049 0.92103 0.92101 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.28 37.16 0.38 -1.96 16 2 C 0.07 1.29 6.17 37.16 0.23 1.52 16 3 O -0.32 -6.85 9.02 -35.89 -0.32 -7.17 16 4 C 0.10 2.09 5.72 -38.63 -0.22 1.87 16 5 C 0.07 1.19 7.30 -39.34 -0.29 0.90 16 6 F -0.14 -2.36 17.11 2.25 0.04 -2.32 16 7 C -0.14 -2.06 10.01 -39.46 -0.39 -2.46 16 8 C -0.11 -1.49 10.02 -39.64 -0.40 -1.89 16 9 C -0.11 -1.93 7.35 -39.17 -0.29 -2.21 16 10 C -0.09 -1.88 5.43 -104.86 -0.57 -2.45 16 11 C 0.51 12.65 6.65 -12.51 -0.08 12.57 16 12 O -0.51 -14.10 11.37 -11.76 -0.13 -14.23 16 13 N -0.44 -10.41 2.55 -116.03 -0.30 -10.70 16 14 C -0.35 -9.07 8.96 -15.00 -0.13 -9.21 16 15 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 16 C 0.08 2.05 4.31 -17.45 -0.08 1.97 16 17 N -0.82 -22.33 11.72 55.50 0.65 -21.68 16 18 Si 0.91 20.87 29.60 -169.99 -5.03 15.84 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.09 1.83 4.16 -4.04 -0.02 1.81 16 23 C -0.13 -2.15 5.14 -27.88 -0.14 -2.29 16 24 C 0.46 7.22 7.96 36.00 0.29 7.51 16 25 O -0.51 -8.80 15.73 -18.75 -0.29 -9.09 16 26 O -0.36 -5.01 10.57 -39.26 -0.41 -5.42 16 27 C 0.03 0.35 10.56 101.05 1.07 1.41 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.76 6.35 -51.93 -0.33 1.43 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.14 2.39 3.73 -52.48 -0.20 2.19 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.09 1.65 3.88 -51.93 -0.20 1.45 16 39 H 0.11 1.80 7.07 -51.93 -0.37 1.43 16 40 H 0.12 2.17 8.01 -51.93 -0.42 1.76 16 41 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -31.65 365.47 -6.23 -37.88 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.28 Total: 4.29 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.65 Total: 7.10 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.35 Total: -32.38 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.17 Total: -35.92 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.65 -6.23 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.531 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds