Wall clock time and date at job start Tue Mar 31 2020 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47028 * 2 1 4 4 C 1.35719 * 116.99921 * 180.02562 * 3 2 1 5 5 C 1.38892 * 120.15863 * 269.98047 * 4 3 2 6 6 F 1.35103 * 119.97742 * 0.04385 * 5 4 3 7 7 C 1.38231 * 120.04975 * 180.02562 * 5 4 3 8 8 C 1.38576 * 120.37432 * 0.02754 * 7 5 4 9 9 C 1.37748 * 120.32088 * 359.66912 * 8 7 5 10 10 C 1.39806 * 119.94317 * 0.60350 * 9 8 7 11 11 C 1.47444 * 120.18420 * 179.69595 * 10 9 8 12 12 O 1.21619 * 119.99671 * 142.46449 * 11 10 9 13 13 N 1.34773 * 119.99979 * 322.74181 * 11 10 9 14 14 C 1.36898 * 120.00130 * 186.13964 * 13 11 10 15 15 H 1.08001 * 120.00684 * 135.57545 * 14 13 11 16 16 C 1.39025 * 119.99998 * 315.57855 * 14 13 11 17 17 N 1.31383 * 119.99947 * 339.36738 * 16 14 13 18 18 Si 1.86794 * 120.00232 * 159.37074 * 16 14 13 19 19 H 1.48500 * 109.47435 * 65.00012 * 18 16 14 20 20 H 1.48507 * 109.47123 * 185.00155 * 18 16 14 21 21 H 1.48502 * 109.46924 * 304.99984 * 18 16 14 22 22 C 1.46500 * 119.99886 * 6.13752 * 13 11 10 23 23 C 1.53001 * 109.47236 * 105.83112 * 22 13 11 24 24 C 1.50699 * 109.47425 * 179.97438 * 23 22 13 25 25 O 1.20827 * 119.99954 * 0.02562 * 24 23 22 26 26 O 1.34232 * 120.00002 * 179.97438 * 24 23 22 27 27 C 1.45198 * 116.99978 * 180.02562 * 26 24 23 28 28 H 1.09005 * 109.46991 * 299.99806 * 1 2 3 29 29 H 1.09006 * 109.47267 * 59.99166 * 1 2 3 30 30 H 1.08993 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46887 * 240.00973 * 2 1 3 32 32 H 1.08994 * 109.47409 * 120.00504 * 2 1 3 33 33 H 1.07994 * 119.81557 * 179.97438 * 7 5 4 34 34 H 1.07998 * 119.83878 * 179.97438 * 8 7 5 35 35 H 1.08003 * 120.02375 * 180.30019 * 9 8 7 36 36 H 0.96992 * 120.00289 * 185.03827 * 17 16 14 37 37 H 1.09006 * 109.47203 * 225.82742 * 22 13 11 38 38 H 1.08995 * 109.47703 * 345.83326 * 22 13 11 39 39 H 1.08994 * 109.47316 * 300.00309 * 23 22 13 40 40 H 1.09003 * 109.47084 * 59.99950 * 23 22 13 41 41 H 1.09000 * 109.47078 * 300.00679 * 27 26 24 42 42 H 1.09003 * 109.46732 * 60.00306 * 27 26 24 43 43 H 1.08999 * 109.46909 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5251 -0.0005 5 6 4.0440 1.6168 1.2001 6 9 3.3776 1.5280 2.3720 7 6 5.4143 1.7984 1.1969 8 6 6.1062 1.8908 -0.0002 9 6 5.4359 1.7957 -1.1999 10 6 4.0492 1.6177 -1.2123 11 6 3.3256 1.5220 -2.4934 12 8 2.3889 0.7545 -2.6067 13 7 3.7056 2.2808 -3.5403 14 6 2.9596 2.2864 -4.6882 15 1 2.7384 3.2200 -5.1841 16 6 2.4867 1.0902 -5.2157 17 7 3.0589 -0.0453 -4.8849 18 14 1.0380 1.0973 -6.3948 19 1 1.4194 1.8049 -7.6434 20 1 0.6541 -0.3009 -6.7157 21 1 -0.1113 1.7935 -5.7626 22 6 4.9169 3.0998 -3.4499 23 6 6.0305 2.4567 -4.2789 24 6 7.2763 3.2994 -4.1865 25 8 7.2740 4.3105 -3.5250 26 8 8.3889 2.9263 -4.8382 27 6 9.5514 3.7858 -4.7035 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9487 1.8696 2.1327 34 1 7.1767 2.0332 0.0074 35 1 5.9805 1.8636 -2.1301 36 1 2.7775 -0.8715 -5.3079 37 1 4.7094 4.0990 -3.8333 38 1 5.2324 3.1684 -2.4089 39 1 6.2379 1.4576 -3.8957 40 1 5.7150 2.3881 -5.3201 41 1 9.3125 4.7813 -5.0778 42 1 9.8352 3.8510 -3.6531 43 1 10.3789 3.3705 -5.2787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:54 Heat of formation + Delta-G solvation = -159.241679 kcal Electronic energy + Delta-G solvation = -30915.301306 eV Core-core repulsion = 26455.733227 eV Total energy + Delta-G solvation = -4459.568079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.95938 -41.75489 -41.18936 -39.53883 -38.40908 -37.59240 -36.36848 -34.34225 -32.86959 -32.00071 -31.81646 -30.35417 -28.57129 -27.13255 -25.45955 -24.42668 -23.99403 -23.35561 -21.81797 -21.36514 -19.37687 -18.98808 -18.76751 -17.96163 -17.76034 -17.60370 -17.43486 -16.97347 -16.87579 -16.49794 -16.27003 -15.95874 -15.81835 -15.53745 -15.21317 -14.86288 -14.69733 -14.21497 -14.14262 -13.87970 -13.60700 -13.48181 -13.34241 -13.09216 -13.00247 -12.83572 -12.76174 -12.71534 -12.59314 -12.47235 -12.33328 -12.19570 -11.88931 -11.71155 -11.51523 -10.84733 -10.80964 -10.17977 -9.82117 -9.64024 -9.18010 -8.21908 -5.98523 -0.18914 -0.03857 1.17748 1.39623 1.47925 1.51333 1.72898 2.10308 2.33807 2.53355 2.74651 2.97519 3.26044 3.29994 3.71987 3.82040 3.89946 3.99388 4.04786 4.15273 4.19039 4.24081 4.24814 4.36850 4.39282 4.41478 4.46096 4.54797 4.76949 4.78738 4.84862 4.87868 4.94946 5.04944 5.06175 5.14775 5.19377 5.25488 5.39815 5.50167 5.64196 6.19295 6.46267 6.74683 6.97125 7.13491 7.58761 8.26056 8.85585 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007971 B = 0.005989 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3511.985095 B = 4673.859132 C = 7782.781695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.068 3.932 3 O -0.344 6.344 4 C 0.077 3.923 5 C 0.061 3.939 6 F -0.137 7.137 7 C -0.117 4.117 8 C -0.087 4.087 9 C -0.113 4.113 10 C -0.123 4.123 11 C 0.500 3.500 12 O -0.552 6.552 13 N -0.451 5.451 14 C -0.371 4.371 15 H 0.081 0.919 16 C 0.039 3.961 17 N -0.849 5.849 18 Si 0.964 3.036 19 H -0.257 1.257 20 H -0.287 1.287 21 H -0.285 1.285 22 C 0.098 3.902 23 C -0.116 4.116 24 C 0.478 3.522 25 O -0.527 6.527 26 O -0.365 6.365 27 C 0.026 3.974 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.148 0.852 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.928 2.654 7.203 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.006 4.006 3 O -0.261 6.261 4 C 0.031 3.969 5 C 0.041 3.959 6 F -0.116 7.116 7 C -0.135 4.135 8 C -0.104 4.104 9 C -0.131 4.131 10 C -0.127 4.127 11 C 0.289 3.711 12 O -0.432 6.432 13 N -0.171 5.171 14 C -0.497 4.497 15 H 0.099 0.901 16 C -0.170 4.170 17 N -0.483 5.483 18 Si 0.789 3.211 19 H -0.181 1.181 20 H -0.213 1.213 21 H -0.211 1.211 22 C -0.025 4.025 23 C -0.154 4.154 24 C 0.321 3.679 25 O -0.417 6.417 26 O -0.282 6.282 27 C -0.067 4.067 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.199 0.801 34 H 0.199 0.801 35 H 0.165 0.835 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.255 2.495 7.360 13.677 hybrid contribution -0.987 -0.208 -0.725 1.242 sum 10.268 2.287 6.635 12.438 Atomic orbital electron populations 1.21657 0.91914 1.03456 1.02278 1.22802 0.96779 0.80912 1.00057 1.85881 1.17091 1.29009 1.94132 1.18888 0.84281 1.02711 0.91046 1.18120 0.91569 1.06603 0.79615 1.91459 1.81227 1.93983 1.44924 1.21550 0.90115 1.00039 1.01826 1.21394 1.02145 0.97315 0.89554 1.21925 0.91792 0.98346 1.01047 1.20699 0.95363 1.03101 0.93507 1.18197 0.85222 0.84606 0.83041 1.90562 1.31463 1.38104 1.83094 1.43221 1.21139 1.41485 1.11274 1.19178 1.33345 0.93378 1.03842 0.90106 1.25899 0.98794 0.94783 0.97573 1.69894 1.39440 0.99000 1.39925 0.85470 0.79788 0.76966 0.78827 1.18149 1.21301 1.21123 1.21946 0.84840 0.94524 1.01231 1.21628 0.89105 0.99353 1.05348 1.23633 0.84864 0.84089 0.75270 1.90637 1.84666 1.26441 1.39929 1.86539 1.21594 1.53278 1.66754 1.23588 0.84811 0.94435 1.03846 0.90896 0.93873 0.88597 0.93613 0.92580 0.80130 0.80129 0.83517 0.92841 0.91797 0.87906 0.87678 0.87318 0.91992 0.91253 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 10.28 71.98 0.74 -3.82 16 2 C 0.07 2.70 6.17 71.98 0.44 3.15 16 3 O -0.34 -15.30 9.02 -74.14 -0.67 -15.97 16 4 C 0.08 3.14 5.72 22.88 0.13 3.27 16 5 C 0.06 1.98 7.30 22.42 0.16 2.15 16 6 F -0.14 -4.44 17.11 44.97 0.77 -3.67 16 7 C -0.12 -2.78 10.01 22.35 0.22 -2.56 16 8 C -0.09 -2.04 10.02 22.23 0.22 -1.82 16 9 C -0.11 -3.68 7.35 22.53 0.17 -3.52 16 10 C -0.12 -5.19 5.43 -20.02 -0.11 -5.30 16 11 C 0.50 25.94 6.65 86.67 0.58 26.52 16 12 O -0.55 -32.58 11.37 12.18 0.14 -32.44 16 13 N -0.45 -22.29 2.55 -639.24 -1.63 -23.93 16 14 C -0.37 -19.89 8.96 84.09 0.75 -19.13 16 15 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 16 C 0.04 2.10 4.31 84.95 0.37 2.47 16 17 N -0.85 -48.44 11.72 21.68 0.25 -48.19 16 18 Si 0.96 44.36 29.60 68.60 2.03 46.39 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 C 0.10 3.84 4.16 86.38 0.36 4.19 16 23 C -0.12 -3.95 5.14 29.85 0.15 -3.80 16 24 C 0.48 14.20 7.96 71.24 0.57 14.77 16 25 O -0.53 -17.11 15.73 21.96 0.35 -16.77 16 26 O -0.37 -9.33 10.57 -51.44 -0.54 -9.88 16 27 C 0.03 0.45 10.56 113.37 1.20 1.64 16 28 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.05 2.13 6.35 -2.38 -0.02 2.11 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.15 4.67 3.73 -2.91 -0.01 4.66 16 36 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 37 H 0.06 2.51 8.10 -2.38 -0.02 2.49 16 38 H 0.10 3.74 3.88 -2.39 -0.01 3.73 16 39 H 0.11 3.60 7.07 -2.39 -0.02 3.58 16 40 H 0.11 4.00 8.01 -2.39 -0.02 3.98 16 41 H 0.06 1.06 8.13 -2.39 -0.02 1.05 16 42 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 43 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.82 365.47 7.70 -66.12 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 1.05 Total: 20.11 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 5.95 Total: 18.21 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.38 Total: -72.11 kcal Atomic # 8 Polarization: -74.32 SS G_CDS: -0.73 Total: -75.05 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.77 Total: -3.67 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.82 7.70 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.119 kcal (2) G-P(sol) polarization free energy of solvation -73.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds