Wall clock time and date at job start Tue Mar 31 2020 23:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 117.00127 * 2 1 4 4 O 1.20826 * 120.00207 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00167 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47062 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.46719 * 180.02562 * 6 5 3 8 8 C 1.37105 * 120.00235 * 264.53785 * 7 6 5 9 9 H 1.07998 * 119.99965 * 146.01865 * 8 7 6 10 10 C 1.38945 * 119.99896 * 326.02320 * 8 7 6 11 11 N 1.31411 * 120.00104 * 337.79768 * 10 8 7 12 12 Si 1.86794 * 120.00198 * 157.80159 * 10 8 7 13 13 H 1.48500 * 109.47117 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47439 * 119.99979 * 12 10 8 15 15 H 1.48506 * 109.47170 * 240.00031 * 12 10 8 16 16 C 1.34776 * 119.99942 * 84.54175 * 7 6 5 17 17 O 1.21290 * 120.00224 * 359.97438 * 16 7 6 18 18 C 1.50706 * 120.00221 * 179.97438 * 16 7 6 19 19 C 1.50692 * 109.47492 * 179.97438 * 18 16 7 20 20 C 1.38172 * 120.01784 * 265.02445 * 19 18 16 21 21 C 1.38438 * 120.03268 * 179.97438 * 20 19 18 22 22 F 1.35101 * 119.97009 * 179.97438 * 21 20 19 23 23 C 1.38472 * 120.05633 * 359.97438 * 21 20 19 24 24 C 1.38131 * 120.03328 * 359.72076 * 23 21 20 25 25 C 1.38691 * 120.01541 * 84.99693 * 19 18 16 26 26 O 1.35945 * 120.02684 * 0.03383 * 25 19 18 27 27 C 1.42905 * 116.99805 * 179.97438 * 26 25 19 28 28 H 1.09007 * 109.46637 * 299.99559 * 1 2 3 29 29 H 1.08998 * 109.47077 * 59.99296 * 1 2 3 30 30 H 1.09001 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46648 * 60.00071 * 5 3 2 32 32 H 1.09004 * 109.46794 * 300.00717 * 5 3 2 33 33 H 1.09001 * 109.47183 * 60.00422 * 6 5 3 34 34 H 1.08999 * 109.47128 * 299.99748 * 6 5 3 35 35 H 0.96992 * 120.00546 * 180.02562 * 11 10 8 36 36 H 1.09006 * 109.46919 * 59.99884 * 18 16 7 37 37 H 1.08997 * 109.47013 * 300.00115 * 18 16 7 38 38 H 1.08001 * 119.98697 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.98409 * 180.02562 * 23 21 20 40 40 H 1.08002 * 120.01876 * 180.30237 * 24 23 21 41 41 H 1.09001 * 109.46717 * 299.99150 * 27 26 25 42 42 H 1.08994 * 109.46968 * 59.99564 * 27 26 25 43 43 H 1.08999 * 109.47134 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8186 -0.0010 8 6 6.1429 2.9664 1.1805 9 1 7.1102 2.5035 1.3085 10 6 5.5872 3.7117 2.2131 11 7 4.6677 4.6134 1.9516 12 14 6.1472 3.4321 3.9731 13 1 7.1841 2.3694 3.9997 14 1 6.7146 4.6916 4.5181 15 1 4.9878 3.0126 4.8007 16 6 6.1409 2.7439 -1.1635 17 8 5.5397 2.6128 -2.2088 18 6 7.6459 2.8233 -1.1649 19 6 8.1534 2.7149 -2.5796 20 6 8.5464 1.4888 -3.0810 21 6 9.0122 1.3888 -4.3808 22 9 9.3966 0.1894 -4.8696 23 6 9.0845 2.5171 -5.1804 24 6 8.6864 3.7430 -4.6838 25 6 8.2258 3.8458 -3.3792 26 8 7.8397 5.0528 -2.8871 27 6 7.9417 6.1746 -3.7665 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9557 0.7809 -0.8909 32 1 3.9565 0.7804 0.8891 33 1 3.6109 3.2356 0.8907 34 1 3.6101 3.2367 -0.8893 35 1 4.2801 5.1340 2.6724 36 1 8.0533 2.0061 -0.5695 37 1 7.9599 3.7757 -0.7378 38 1 8.4901 0.6080 -2.4586 39 1 9.4477 2.4377 -6.1944 40 1 8.7383 4.6220 -5.3092 41 1 8.9798 6.3022 -4.0736 42 1 7.3208 6.0046 -4.6459 43 1 7.6022 7.0728 -3.2505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:20 Heat of formation + Delta-G solvation = -190.085669 kcal Electronic energy + Delta-G solvation = -29757.028495 eV Core-core repulsion = 25296.122920 eV Total energy + Delta-G solvation = -4460.905575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.77191 -41.60256 -41.30251 -40.16528 -38.17354 -37.64846 -36.76689 -34.03270 -33.69730 -32.40506 -30.77102 -29.18202 -28.45412 -27.85179 -26.87668 -25.06050 -23.30173 -22.83077 -21.75547 -20.95309 -19.24605 -18.86677 -18.37605 -17.99897 -17.98143 -17.72306 -17.60280 -17.44435 -16.70971 -16.31236 -16.29256 -15.96156 -15.66490 -15.59391 -15.33568 -15.07474 -14.62806 -14.31079 -14.15942 -13.99894 -13.82089 -13.63615 -13.50488 -13.24144 -13.07862 -12.94089 -12.79979 -12.72881 -12.54426 -12.40713 -12.04176 -11.93664 -11.81656 -11.80311 -11.68636 -11.61525 -11.03569 -10.45643 -9.92350 -9.52907 -8.97731 -8.27380 -6.01877 0.20057 0.27644 1.11371 1.44436 1.52560 1.64332 1.66419 2.06976 2.36202 2.40547 2.57143 3.06298 3.15207 3.34697 3.69077 3.79170 3.83970 4.10590 4.14498 4.18881 4.24247 4.29785 4.30289 4.40895 4.41377 4.50353 4.55693 4.59887 4.63668 4.68596 4.72192 4.82222 4.94114 5.07830 5.14387 5.17764 5.25732 5.40531 5.41717 5.55539 5.79766 5.98554 6.42516 6.47479 6.68408 7.15585 7.60421 8.03474 8.75443 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008957 B = 0.003879 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.436302 B = 7217.328102 C = 8733.099284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.115 4.115 6 C 0.136 3.864 7 N -0.450 5.450 8 C -0.354 4.354 9 H 0.111 0.889 10 C 0.001 3.999 11 N -0.892 5.892 12 Si 0.980 3.020 13 H -0.248 1.248 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.470 3.530 17 O -0.625 6.625 18 C -0.066 4.066 19 C -0.079 4.079 20 C -0.113 4.113 21 C 0.044 3.956 22 F -0.146 7.146 23 C -0.112 4.112 24 C -0.179 4.179 25 C 0.118 3.882 26 O -0.335 6.335 27 C 0.018 3.982 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.028 0.972 35 H 0.270 0.730 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 -4.503 -7.026 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.153 4.153 6 C 0.011 3.989 7 N -0.168 5.168 8 C -0.481 4.481 9 H 0.128 0.872 10 C -0.202 4.202 11 N -0.529 5.529 12 Si 0.803 3.197 13 H -0.171 1.171 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.261 3.739 17 O -0.512 6.512 18 C -0.106 4.106 19 C -0.080 4.080 20 C -0.132 4.132 21 C 0.025 3.975 22 F -0.125 7.125 23 C -0.131 4.131 24 C -0.197 4.197 25 C 0.072 3.928 26 O -0.248 6.248 27 C -0.076 4.076 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.184 0.816 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.861 -4.122 -7.245 9.649 hybrid contribution -0.403 0.286 0.653 0.819 sum 4.458 -3.836 -6.592 8.834 Atomic orbital electron populations 1.23588 0.74772 1.05897 1.02433 1.86508 1.25174 1.32337 1.83858 1.23856 0.92142 0.81282 0.71022 1.90639 1.67856 1.37495 1.46738 1.21683 0.86786 1.00836 1.06033 1.20893 0.82599 0.92860 1.02541 1.43628 1.04381 1.62928 1.05846 1.19894 1.05867 1.32095 0.90246 0.87181 1.26223 0.96862 0.92929 1.04228 1.70079 1.29080 1.19463 1.34278 0.85083 0.78535 0.78621 0.77432 1.17135 1.20913 1.20873 1.20891 0.90567 0.79551 0.82903 1.90511 1.71520 1.56530 1.32687 1.20165 0.91850 1.05099 0.93446 1.18802 1.01754 0.91267 0.96201 1.20918 0.99647 0.97611 0.94987 1.17590 1.05046 0.81434 0.93442 1.91451 1.89386 1.43653 1.88036 1.21151 1.00417 0.90366 1.01121 1.21309 1.04406 0.99868 0.94158 1.19110 0.95072 0.85684 0.92962 1.86168 1.80937 1.15158 1.42564 1.23344 1.03001 0.86550 0.94723 0.92063 0.92214 0.84329 0.88036 0.86216 0.88587 0.95378 0.92037 0.87241 0.88729 0.83607 0.81631 0.81629 0.90118 0.91987 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.67 10.57 -51.39 -0.54 -12.21 16 3 C 0.47 18.70 7.96 71.24 0.57 19.27 16 4 O -0.54 -24.51 15.73 21.96 0.35 -24.16 16 5 C -0.11 -4.69 6.10 29.85 0.18 -4.51 16 6 C 0.14 6.80 4.19 86.38 0.36 7.17 16 7 N -0.45 -22.35 2.56 -635.54 -1.63 -23.98 16 8 C -0.35 -17.06 8.70 84.04 0.73 -16.33 16 9 H 0.11 4.84 6.97 -2.91 -0.02 4.82 16 10 C 0.00 0.03 4.92 84.93 0.42 0.45 16 11 N -0.89 -48.01 11.34 21.66 0.25 -47.76 16 12 Si 0.98 38.20 29.61 68.60 2.03 40.23 16 13 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 14 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 15 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 16 C 0.47 22.69 7.59 87.66 0.67 23.36 16 17 O -0.63 -33.29 15.70 -3.06 -0.05 -33.34 16 18 C -0.07 -2.61 4.21 29.10 0.12 -2.49 16 19 C -0.08 -2.85 4.39 -19.77 -0.09 -2.93 16 20 C -0.11 -3.62 9.66 22.30 0.22 -3.40 16 21 C 0.04 1.28 7.30 22.37 0.16 1.44 16 22 F -0.15 -4.16 17.27 44.97 0.78 -3.39 16 23 C -0.11 -2.76 10.02 22.30 0.22 -2.54 16 24 C -0.18 -4.63 9.04 22.36 0.20 -4.43 16 25 C 0.12 3.96 6.66 22.49 0.15 4.11 16 26 O -0.33 -11.71 9.63 -92.93 -0.90 -12.61 16 27 C 0.02 0.41 9.81 113.37 1.11 1.53 16 28 H 0.06 1.45 8.13 -2.38 -0.02 1.43 16 29 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 4.08 8.14 -2.38 -0.02 4.07 16 32 H 0.12 4.47 8.14 -2.39 -0.02 4.45 16 33 H 0.10 5.26 5.31 -2.39 -0.01 5.25 16 34 H 0.03 1.55 7.55 -2.39 -0.02 1.53 16 35 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 36 H 0.11 3.76 7.55 -2.38 -0.02 3.75 16 37 H 0.09 3.88 7.64 -2.39 -0.02 3.87 16 38 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.17 3.08 6.30 -2.91 -0.02 3.06 16 41 H 0.08 1.35 7.68 -2.39 -0.02 1.33 16 42 H 0.06 1.29 7.65 -2.39 -0.02 1.28 16 43 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -70.66 374.71 7.56 -63.10 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: 1.04 Total: 31.62 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 6.22 Total: 22.50 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.38 Total: -71.74 kcal Atomic # 8 Polarization: -81.18 SS G_CDS: -1.14 Total: -82.32 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -70.66 7.56 -63.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.981 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds