Wall clock time and date at job start Tue Mar 31 2020 23:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99805 * 2 1 4 4 C 1.50698 * 109.47309 * 179.97438 * 3 2 1 5 5 C 1.38365 * 119.85614 * 0.25793 * 4 3 2 6 6 C 1.37921 * 120.17576 * 180.25276 * 5 4 3 7 7 C 1.39667 * 119.90020 * 359.74781 * 6 5 4 8 8 C 1.47736 * 120.13670 * 180.02562 * 7 6 5 9 9 O 1.21591 * 119.99692 * 144.95638 * 8 7 6 10 10 N 1.34776 * 120.00291 * 324.95298 * 8 7 6 11 11 C 1.36876 * 119.99449 * 4.56547 * 10 8 7 12 12 H 1.08001 * 120.00392 * 316.82387 * 11 10 8 13 13 C 1.39048 * 119.99620 * 136.83136 * 11 10 8 14 14 N 1.31367 * 120.00096 * 343.64505 * 13 11 10 15 15 Si 1.86797 * 120.00179 * 163.65485 * 13 11 10 16 16 H 1.48501 * 109.47417 * 89.99261 * 15 13 11 17 17 H 1.48499 * 109.46928 * 209.99766 * 15 13 11 18 18 H 1.48503 * 109.46834 * 329.99668 * 15 13 11 19 19 C 1.46492 * 120.00289 * 184.57071 * 10 8 7 20 20 C 1.52999 * 109.47390 * 89.10179 * 19 10 8 21 21 C 1.50705 * 109.47168 * 180.02562 * 20 19 10 22 22 O 1.20828 * 120.00017 * 0.02562 * 21 20 19 23 23 O 1.34231 * 120.00079 * 179.97438 * 21 20 19 24 24 C 1.45197 * 116.99769 * 179.97438 * 23 21 20 25 25 C 1.39595 * 119.72503 * 359.97438 * 7 6 5 26 26 C 1.38198 * 119.81859 * 0.02562 * 25 7 6 27 27 F 1.35099 * 119.95043 * 179.97438 * 26 25 7 28 28 H 1.09002 * 109.46942 * 59.99951 * 1 2 3 29 29 H 1.09003 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47360 * 300.00151 * 1 2 3 31 31 H 1.09007 * 109.47279 * 59.99573 * 3 2 1 32 32 H 1.09003 * 109.47531 * 300.00196 * 3 2 1 33 33 H 1.07995 * 119.90978 * 359.97438 * 5 4 3 34 34 H 1.08001 * 120.04945 * 179.71942 * 6 5 4 35 35 H 0.96996 * 120.00166 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47210 * 209.10538 * 19 10 8 37 37 H 1.09003 * 109.47179 * 329.09760 * 19 10 8 38 38 H 1.09000 * 109.47223 * 299.99804 * 20 19 10 39 39 H 1.08991 * 109.47058 * 60.00075 * 20 19 10 40 40 H 1.09001 * 109.47191 * 60.00531 * 24 23 21 41 41 H 1.09002 * 109.46760 * 180.02562 * 24 23 21 42 42 H 1.08995 * 109.47412 * 300.00539 * 24 23 21 43 43 H 1.08000 * 120.09464 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1045 -0.0640 -0.0043 6 6 5.4787 -0.1805 0.0015 7 6 6.2747 0.9671 0.0071 8 6 7.7473 0.8484 0.0127 9 8 8.4249 1.6601 -0.5875 10 7 8.3396 -0.1596 0.6833 11 6 7.5760 -1.1259 1.2806 12 1 6.6906 -0.8493 1.8338 13 6 7.9403 -2.4636 1.1752 14 7 8.8056 -2.8387 0.2607 15 14 7.1992 -3.7275 2.3339 16 1 5.9550 -4.2765 1.7373 17 1 8.1712 -4.8287 2.5524 18 1 6.8821 -3.0820 3.6332 19 6 9.8005 -0.2210 0.7729 20 6 10.2692 0.5582 2.0034 21 6 11.7721 0.4955 2.0953 22 8 12.4036 -0.1098 1.2618 23 8 12.4093 1.1130 3.1025 24 6 13.8574 1.0100 3.1279 25 6 5.6731 2.2268 0.0062 26 6 4.2950 2.3301 0.0003 27 9 3.7100 3.5479 0.0000 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.4888 -0.9512 -0.0082 34 1 5.9387 -1.1577 0.0022 35 1 9.0601 -3.7718 0.1875 36 1 10.1158 -1.2607 0.8594 37 1 10.2383 0.2180 -0.1236 38 1 9.9539 1.5980 1.9169 39 1 9.8314 0.1192 2.8999 40 1 14.2684 1.4396 2.2143 41 1 14.2450 1.5516 3.9908 42 1 14.1459 -0.0387 3.1980 43 1 6.2829 3.1181 0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871346165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:33 Heat of formation + Delta-G solvation = -176.111993 kcal Electronic energy + Delta-G solvation = -29416.158749 eV Core-core repulsion = 24955.859119 eV Total energy + Delta-G solvation = -4460.299631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.61602 -40.11655 -39.47378 -38.31817 -37.10045 -36.20023 -35.10496 -32.26187 -31.87733 -30.74686 -29.92966 -27.74514 -27.21925 -25.74783 -25.26121 -23.62383 -22.13649 -21.61171 -20.32311 -19.44807 -18.06492 -17.32364 -16.68968 -16.37626 -16.25095 -16.17063 -16.08101 -16.04452 -15.39164 -15.25381 -15.14134 -14.54480 -14.38820 -14.01043 -13.76757 -13.66116 -13.35122 -12.94961 -12.90416 -12.61879 -12.56309 -12.25864 -12.11159 -11.83504 -11.68194 -11.44538 -11.33680 -11.13670 -11.08280 -10.82532 -10.71720 -10.57923 -10.48657 -10.15800 -10.06377 -9.91216 -9.28112 -8.72218 -8.47305 -8.12225 -7.65332 -6.52511 -4.29544 1.33745 1.69358 2.62103 2.99329 3.04541 3.15001 3.17577 3.58272 3.60086 3.97153 4.24916 4.44409 4.72730 4.80501 4.91907 5.16343 5.17209 5.20985 5.24193 5.25215 5.28166 5.35742 5.40272 5.50672 5.60096 5.69935 5.76551 5.83354 5.85899 5.91533 6.20585 6.27706 6.48674 6.56298 6.68081 6.73239 6.83584 7.03969 7.11792 7.18955 7.30499 7.38716 7.74950 8.12967 8.18640 8.87050 9.25443 9.70014 10.48596 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003389 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.315466 B = 8258.985026 C = 9905.318712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.110 3.890 4 C -0.123 4.123 5 C -0.091 4.091 6 C -0.075 4.075 7 C -0.066 4.066 8 C 0.513 3.487 9 O -0.593 6.593 10 N -0.426 5.426 11 C -0.355 4.355 12 H 0.097 0.903 13 C 0.048 3.952 14 N -0.848 5.848 15 Si 0.910 3.090 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.129 3.871 20 C -0.125 4.125 21 C 0.466 3.534 22 O -0.505 6.505 23 O -0.366 6.366 24 C 0.035 3.965 25 C -0.113 4.113 26 C 0.078 3.922 27 F -0.147 7.147 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.139 0.861 34 H 0.170 0.830 35 H 0.275 0.725 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 4.201 4.568 9.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.034 3.966 4 C -0.124 4.124 5 C -0.109 4.109 6 C -0.093 4.093 7 C -0.069 4.069 8 C 0.302 3.698 9 O -0.478 6.478 10 N -0.143 5.143 11 C -0.482 4.482 12 H 0.114 0.886 13 C -0.160 4.160 14 N -0.482 5.482 15 Si 0.735 3.265 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.190 1.190 19 C 0.005 3.995 20 C -0.164 4.164 21 C 0.309 3.691 22 O -0.392 6.392 23 O -0.283 6.283 24 C -0.059 4.059 25 C -0.133 4.133 26 C 0.059 3.941 27 F -0.125 7.125 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.187 0.813 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.484 4.078 3.959 8.622 hybrid contribution -0.420 -0.263 0.613 0.788 sum -6.904 3.815 4.572 9.117 Atomic orbital electron populations 1.22742 0.80934 1.02856 0.99927 1.87880 1.19600 1.27242 1.95449 1.21070 0.89986 0.84883 1.00709 1.19680 0.94007 0.93232 1.05477 1.20907 0.94744 0.96322 0.98962 1.22407 0.92371 1.01230 0.93314 1.19881 0.94718 0.92461 0.99844 1.18310 0.86649 0.84193 0.80649 1.90655 1.65116 1.45434 1.46641 1.43168 1.04540 1.21631 1.44931 1.19477 1.10765 0.85483 1.32478 0.88593 1.25492 0.96705 0.98172 0.95643 1.69877 1.31193 1.18254 1.28854 0.86193 0.79140 0.80179 0.80956 1.19677 1.20578 1.19008 1.21151 0.81682 1.02513 0.94136 1.21896 0.85961 1.04455 1.04091 1.24033 0.92071 0.74919 0.78048 1.90657 1.68733 1.39925 1.39842 1.86538 1.22509 1.69900 1.49376 1.23173 0.77383 1.02530 1.02810 1.21052 0.91998 0.98786 1.01497 1.17096 0.90801 0.79071 1.07106 1.91435 1.84578 1.42077 1.94439 0.94082 0.89458 0.94063 0.91992 0.91992 0.84309 0.81278 0.91488 0.87014 0.91205 0.88452 0.87537 0.92148 0.88595 0.92143 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.95 9.17 -35.23 -0.32 -5.27 16 3 C 0.11 1.42 5.90 36.00 0.21 1.63 16 4 C -0.12 -1.95 5.89 -104.45 -0.62 -2.56 16 5 C -0.09 -1.53 9.36 -39.65 -0.37 -1.90 16 6 C -0.07 -1.44 7.79 -39.16 -0.31 -1.75 16 7 C -0.07 -1.36 5.47 -104.98 -0.57 -1.94 16 8 C 0.51 12.15 7.37 -12.38 -0.09 12.06 16 9 O -0.59 -15.36 16.39 5.29 0.09 -15.27 16 10 N -0.43 -10.02 2.47 -115.93 -0.29 -10.30 16 11 C -0.35 -8.10 6.07 -15.00 -0.09 -8.20 16 12 H 0.10 2.11 6.46 -52.49 -0.34 1.78 16 13 C 0.05 1.12 4.96 -17.45 -0.09 1.03 16 14 N -0.85 -21.10 11.57 55.50 0.64 -20.46 16 15 Si 0.91 17.97 29.58 -169.99 -5.03 12.94 16 16 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 19 C 0.13 2.97 4.30 -4.05 -0.02 2.95 16 20 C -0.13 -2.39 6.13 -27.88 -0.17 -2.56 16 21 C 0.47 8.70 7.96 36.01 0.29 8.99 16 22 O -0.50 -10.72 15.73 -18.75 -0.29 -11.02 16 23 O -0.37 -5.82 10.57 -39.26 -0.41 -6.23 16 24 C 0.04 0.42 10.56 101.05 1.07 1.49 16 25 C -0.11 -2.11 9.59 -39.09 -0.37 -2.49 16 26 C 0.08 1.32 7.24 -39.47 -0.29 1.03 16 27 F -0.15 -2.31 16.79 2.25 0.04 -2.27 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.14 2.15 6.99 -52.49 -0.37 1.79 16 34 H 0.17 3.50 5.61 -52.49 -0.29 3.21 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.11 2.78 5.72 -51.93 -0.30 2.48 16 37 H 0.07 1.74 7.35 -51.93 -0.38 1.35 16 38 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 40 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 43 H 0.14 2.49 8.00 -52.49 -0.42 2.07 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -28.94 373.03 -5.73 -34.67 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.46 Total: 8.42 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.31 Total: 9.18 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.36 Total: -30.76 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.95 Total: -37.79 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.94 -5.73 -34.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871346165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.441 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds