Wall clock time and date at job start Tue Mar 31 2020 23:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99805 * 2 1 4 4 C 1.50698 * 109.47309 * 179.97438 * 3 2 1 5 5 C 1.38365 * 119.85614 * 0.25793 * 4 3 2 6 6 C 1.37921 * 120.17576 * 180.25276 * 5 4 3 7 7 C 1.39667 * 119.90020 * 359.74781 * 6 5 4 8 8 C 1.47736 * 120.13670 * 180.02562 * 7 6 5 9 9 O 1.21591 * 119.99692 * 144.95638 * 8 7 6 10 10 N 1.34776 * 120.00291 * 324.95298 * 8 7 6 11 11 C 1.36876 * 119.99449 * 4.56547 * 10 8 7 12 12 H 1.08001 * 120.00392 * 316.82387 * 11 10 8 13 13 C 1.39048 * 119.99620 * 136.83136 * 11 10 8 14 14 N 1.31367 * 120.00096 * 343.64505 * 13 11 10 15 15 Si 1.86797 * 120.00179 * 163.65485 * 13 11 10 16 16 H 1.48501 * 109.47417 * 89.99261 * 15 13 11 17 17 H 1.48499 * 109.46928 * 209.99766 * 15 13 11 18 18 H 1.48503 * 109.46834 * 329.99668 * 15 13 11 19 19 C 1.46492 * 120.00289 * 184.57071 * 10 8 7 20 20 C 1.52999 * 109.47390 * 89.10179 * 19 10 8 21 21 C 1.50705 * 109.47168 * 180.02562 * 20 19 10 22 22 O 1.20828 * 120.00017 * 0.02562 * 21 20 19 23 23 O 1.34231 * 120.00079 * 179.97438 * 21 20 19 24 24 C 1.45197 * 116.99769 * 179.97438 * 23 21 20 25 25 C 1.39595 * 119.72503 * 359.97438 * 7 6 5 26 26 C 1.38198 * 119.81859 * 0.02562 * 25 7 6 27 27 F 1.35099 * 119.95043 * 179.97438 * 26 25 7 28 28 H 1.09002 * 109.46942 * 59.99951 * 1 2 3 29 29 H 1.09003 * 109.47086 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47360 * 300.00151 * 1 2 3 31 31 H 1.09007 * 109.47279 * 59.99573 * 3 2 1 32 32 H 1.09003 * 109.47531 * 300.00196 * 3 2 1 33 33 H 1.07995 * 119.90978 * 359.97438 * 5 4 3 34 34 H 1.08001 * 120.04945 * 179.71942 * 6 5 4 35 35 H 0.96996 * 120.00166 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47210 * 209.10538 * 19 10 8 37 37 H 1.09003 * 109.47179 * 329.09760 * 19 10 8 38 38 H 1.09000 * 109.47223 * 299.99804 * 20 19 10 39 39 H 1.08991 * 109.47058 * 60.00075 * 20 19 10 40 40 H 1.09001 * 109.47191 * 60.00531 * 24 23 21 41 41 H 1.09002 * 109.46760 * 180.02562 * 24 23 21 42 42 H 1.08995 * 109.47412 * 300.00539 * 24 23 21 43 43 H 1.08000 * 120.09464 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1045 -0.0640 -0.0043 6 6 5.4787 -0.1805 0.0015 7 6 6.2747 0.9671 0.0071 8 6 7.7473 0.8484 0.0127 9 8 8.4249 1.6601 -0.5875 10 7 8.3396 -0.1596 0.6833 11 6 7.5760 -1.1259 1.2806 12 1 6.6906 -0.8493 1.8338 13 6 7.9403 -2.4636 1.1752 14 7 8.8056 -2.8387 0.2607 15 14 7.1992 -3.7275 2.3339 16 1 5.9550 -4.2765 1.7373 17 1 8.1712 -4.8287 2.5524 18 1 6.8821 -3.0820 3.6332 19 6 9.8005 -0.2210 0.7729 20 6 10.2692 0.5582 2.0034 21 6 11.7721 0.4955 2.0953 22 8 12.4036 -0.1098 1.2618 23 8 12.4093 1.1130 3.1025 24 6 13.8574 1.0100 3.1279 25 6 5.6731 2.2268 0.0062 26 6 4.2950 2.3301 0.0003 27 9 3.7100 3.5479 0.0000 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.4888 -0.9512 -0.0082 34 1 5.9387 -1.1577 0.0022 35 1 9.0601 -3.7718 0.1875 36 1 10.1158 -1.2607 0.8594 37 1 10.2383 0.2180 -0.1236 38 1 9.9539 1.5980 1.9169 39 1 9.8314 0.1192 2.8999 40 1 14.2684 1.4396 2.2143 41 1 14.2450 1.5516 3.9908 42 1 14.1459 -0.0387 3.1980 43 1 6.2829 3.1181 0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871346165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:33 Heat of formation + Delta-G solvation = -191.950431 kcal Electronic energy + Delta-G solvation = -29416.845556 eV Core-core repulsion = 24955.859119 eV Total energy + Delta-G solvation = -4460.986437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.92815 -41.61854 -41.05869 -39.61988 -38.30563 -37.65045 -36.93300 -33.95678 -33.39295 -32.29455 -31.38411 -28.90844 -28.27525 -27.06808 -26.73631 -25.13015 -23.54058 -23.03277 -21.80811 -21.19086 -19.69279 -18.81347 -18.01954 -17.83230 -17.66159 -17.59793 -17.30753 -17.09087 -16.85812 -16.52578 -16.34142 -16.18242 -15.99934 -15.47894 -15.24349 -15.06627 -14.80225 -14.28576 -14.13031 -13.98309 -13.84182 -13.76216 -13.63952 -13.16377 -13.00131 -12.85265 -12.78544 -12.65147 -12.46225 -12.31043 -12.10113 -12.02652 -11.94760 -11.79979 -11.62193 -11.07495 -10.78866 -10.53562 -9.89675 -9.54425 -9.48657 -8.31582 -6.14051 -0.11386 0.26877 1.11615 1.46611 1.52686 1.61524 1.64518 1.95277 2.32221 2.65657 2.69966 2.82356 3.07796 3.32003 3.72080 3.81715 3.91755 4.05097 4.15049 4.24274 4.27753 4.31210 4.31910 4.36018 4.40336 4.45954 4.57227 4.59935 4.64187 4.68600 4.84050 4.91297 4.93572 5.10997 5.17897 5.24036 5.34228 5.38220 5.49093 5.58218 5.90002 5.95412 6.21422 6.36198 6.68405 7.05501 7.42477 7.87878 8.71026 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003389 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.315466 B = 8258.985026 C = 9905.318712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.111 3.889 4 C -0.109 4.109 5 C -0.084 4.084 6 C -0.079 4.079 7 C -0.091 4.091 8 C 0.501 3.499 9 O -0.628 6.628 10 N -0.432 5.432 11 C -0.354 4.354 12 H 0.106 0.894 13 C 0.012 3.988 14 N -0.888 5.888 15 Si 0.974 3.026 16 H -0.264 1.264 17 H -0.287 1.287 18 H -0.255 1.255 19 C 0.135 3.865 20 C -0.115 4.115 21 C 0.474 3.526 22 O -0.537 6.537 23 O -0.362 6.362 24 C 0.026 3.974 25 C -0.116 4.116 26 C 0.085 3.915 27 F -0.137 7.137 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.274 0.726 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.138 0.862 42 H 0.061 0.939 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 4.511 6.328 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.035 3.965 4 C -0.110 4.110 5 C -0.102 4.102 6 C -0.097 4.097 7 C -0.094 4.094 8 C 0.292 3.708 9 O -0.516 6.516 10 N -0.148 5.148 11 C -0.481 4.481 12 H 0.124 0.876 13 C -0.193 4.193 14 N -0.523 5.523 15 Si 0.796 3.204 16 H -0.189 1.189 17 H -0.213 1.213 18 H -0.179 1.179 19 C 0.011 3.989 20 C -0.154 4.154 21 C 0.318 3.682 22 O -0.427 6.427 23 O -0.278 6.278 24 C -0.067 4.067 25 C -0.136 4.136 26 C 0.066 3.934 27 F -0.115 7.115 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.156 0.844 42 H 0.080 0.920 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.991 4.404 5.750 11.545 hybrid contribution 0.313 -0.289 0.042 0.428 sum -8.677 4.115 5.792 11.215 Atomic orbital electron populations 1.22972 0.78801 1.04121 1.01164 1.87835 1.21886 1.27077 1.95693 1.21130 0.87546 0.85549 1.02323 1.20017 0.96096 0.92210 1.02660 1.20999 0.93528 0.97522 0.98108 1.22179 0.93459 0.99817 0.94271 1.19666 0.92924 0.93885 1.02924 1.18864 0.88133 0.83796 0.80028 1.90608 1.66302 1.46635 1.48069 1.43375 1.04743 1.21883 1.44841 1.19728 1.10928 0.85471 1.32018 0.87617 1.26252 0.96815 0.99701 0.96545 1.70003 1.33027 1.18551 1.30746 0.85218 0.78280 0.77521 0.79338 1.18853 1.21278 1.17890 1.20921 0.81764 1.01586 0.94667 1.21664 0.86898 1.04137 1.02661 1.23791 0.91822 0.74471 0.78121 1.90648 1.69303 1.41523 1.41208 1.86506 1.24822 1.68806 1.47677 1.23586 0.74850 1.03461 1.04781 1.21032 0.93080 0.97912 1.01618 1.16992 0.90050 0.79814 1.06542 1.91462 1.84213 1.41559 1.94293 0.92869 0.88308 0.92770 0.90161 0.90323 0.82668 0.83117 0.91624 0.88988 0.94310 0.87868 0.85966 0.92176 0.84377 0.92047 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -9.06 9.17 -148.98 -1.37 -10.43 16 3 C 0.11 2.45 5.90 71.24 0.42 2.87 16 4 C -0.11 -3.17 5.89 -19.76 -0.12 -3.28 16 5 C -0.08 -2.66 9.36 22.22 0.21 -2.45 16 6 C -0.08 -3.02 7.79 22.54 0.18 -2.85 16 7 C -0.09 -3.83 5.47 -20.09 -0.11 -3.94 16 8 C 0.50 24.77 7.37 86.75 0.64 25.41 16 9 O -0.63 -34.22 16.39 -4.00 -0.07 -34.28 16 10 N -0.43 -21.15 2.47 -638.95 -1.58 -22.73 16 11 C -0.35 -16.47 6.07 84.10 0.51 -15.96 16 12 H 0.11 4.65 6.46 -2.91 -0.02 4.63 16 13 C 0.01 0.54 4.96 84.96 0.42 0.96 16 14 N -0.89 -45.76 11.57 21.68 0.25 -45.51 16 15 Si 0.97 36.61 29.58 68.60 2.03 38.64 16 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 17 H -0.29 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 19 C 0.13 6.52 4.30 86.38 0.37 6.89 16 20 C -0.12 -4.50 6.13 29.85 0.18 -4.32 16 21 C 0.47 17.94 7.96 71.24 0.57 18.50 16 22 O -0.54 -23.59 15.73 21.96 0.35 -23.24 16 23 O -0.36 -11.15 10.57 -51.43 -0.54 -11.69 16 24 C 0.03 0.59 10.56 113.37 1.20 1.79 16 25 C -0.12 -4.33 9.59 22.59 0.22 -4.11 16 26 C 0.09 2.71 7.24 22.34 0.16 2.87 16 27 F -0.14 -3.96 16.79 44.97 0.75 -3.21 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.16 4.44 6.99 -2.91 -0.02 4.42 16 34 H 0.15 6.36 5.61 -2.91 -0.02 6.34 16 35 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 36 H 0.09 4.83 5.72 -2.39 -0.01 4.82 16 37 H 0.04 2.07 7.35 -2.39 -0.02 2.05 16 38 H 0.10 3.91 8.14 -2.39 -0.02 3.90 16 39 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 40 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 41 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 43 H 0.13 4.97 8.00 -2.91 -0.02 4.94 16 Total: -1.00 -64.86 373.03 6.97 -57.89 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 1.05 Total: 30.59 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 6.09 Total: 23.97 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -1.33 Total: -68.24 kcal Atomic # 8 Polarization: -78.02 SS G_CDS: -1.63 Total: -79.65 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.75 Total: -3.21 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Total: -64.86 6.97 -57.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871346165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.056 kcal (2) G-P(sol) polarization free energy of solvation -64.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds