Wall clock time and date at job start Tue Mar 31 2020 22:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47461 * 2 1 4 4 C 1.34230 * 117.00112 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99953 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47375 * 179.97438 * 6 4 3 8 8 C 1.46500 * 120.00491 * 270.00906 * 7 6 4 9 9 C 1.53007 * 109.46664 * 264.40111 * 8 7 6 10 10 C 1.53001 * 109.46902 * 185.24201 * 9 8 7 11 11 C 1.52997 * 109.46913 * 305.24143 * 9 8 7 12 12 C 1.34785 * 119.99547 * 89.99777 * 7 6 4 13 13 O 1.21759 * 119.99750 * 358.72841 * 12 7 6 14 14 C 1.46234 * 119.99835 * 178.72167 * 12 7 6 15 15 S 1.75671 * 125.22848 * 32.63569 * 14 12 7 16 16 C 1.75476 * 92.09334 * 179.97438 * 15 14 12 17 17 C 1.32769 * 111.36066 * 359.74127 * 16 15 14 18 18 C 1.39546 * 125.23210 * 212.61481 * 14 12 7 19 19 C 1.40551 * 123.70907 * 0.02562 * 18 14 12 20 20 H 1.07997 * 120.00207 * 358.61742 * 19 18 14 21 21 C 1.40304 * 119.99853 * 178.62025 * 19 18 14 22 22 N 1.30633 * 120.00173 * 212.62814 * 21 19 18 23 23 Si 1.86807 * 119.99800 * 32.62933 * 21 19 18 24 24 H 1.48496 * 109.46721 * 263.42595 * 23 21 19 25 25 H 1.48499 * 109.47309 * 23.42606 * 23 21 19 26 26 H 1.48497 * 109.46811 * 143.42943 * 23 21 19 27 27 H 1.08997 * 109.47055 * 300.00340 * 1 2 3 28 28 H 1.09002 * 109.46909 * 60.00342 * 1 2 3 29 29 H 1.09002 * 109.47463 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46977 * 239.99144 * 2 1 3 31 31 H 1.09007 * 109.46790 * 120.00099 * 2 1 3 32 32 H 1.09004 * 109.47155 * 59.99832 * 6 4 3 33 33 H 1.08993 * 109.47579 * 299.99966 * 6 4 3 34 34 H 1.08996 * 109.46883 * 24.39641 * 8 7 6 35 35 H 1.08999 * 109.47305 * 144.40366 * 8 7 6 36 36 H 1.08998 * 109.47174 * 65.24042 * 9 8 7 37 37 H 1.08998 * 109.47336 * 59.99940 * 10 9 8 38 38 H 1.08998 * 109.46816 * 179.97438 * 10 9 8 39 39 H 1.09005 * 109.47066 * 299.99875 * 10 9 8 40 40 H 1.08997 * 109.47401 * 48.61672 * 11 9 8 41 41 H 1.09003 * 109.46729 * 168.61963 * 11 9 8 42 42 H 1.09001 * 109.47220 * 288.61524 * 11 9 8 43 43 H 1.07994 * 124.32392 * 180.02562 * 16 15 14 44 44 H 1.07998 * 122.78684 * 180.23757 * 17 16 15 45 45 H 0.97006 * 120.00218 * 354.96547 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9208 2.9372 0.0000 7 7 5.3838 2.8606 0.0014 8 6 6.1143 2.8230 1.2707 9 6 6.5654 4.2373 1.6414 10 6 7.4386 4.1814 2.8966 11 6 7.3708 4.8349 0.4860 12 6 6.0578 2.8244 -1.1653 13 8 5.4496 2.8320 -2.2201 14 6 7.5193 2.7761 -1.1642 15 16 8.5061 1.9837 0.0541 16 6 9.9920 2.4418 -0.7590 17 6 9.7447 3.1333 -1.8651 18 6 8.3445 3.3520 -2.1310 19 6 7.8635 4.0625 -3.2442 20 1 6.8000 4.1677 -3.3993 21 6 8.7652 4.6349 -4.1541 22 7 8.4582 5.7479 -4.7653 23 14 10.4046 3.8054 -4.4916 24 1 11.4575 4.4298 -3.6510 25 1 10.3042 2.3599 -4.1666 26 1 10.7552 3.9672 -5.9255 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.5844 3.4699 0.8895 33 1 3.5854 3.4689 -0.8904 34 1 5.4634 2.4325 2.0529 35 1 6.9872 2.1782 1.1687 36 1 5.6910 4.8587 1.8344 37 1 8.3130 3.5600 2.7036 38 1 7.7603 5.1889 3.1604 39 1 6.8647 3.7556 3.7197 40 1 6.8279 4.6911 -0.4481 41 1 7.5192 5.9008 0.6597 42 1 8.3394 4.3388 0.4234 43 1 10.9814 2.1893 -0.4074 44 1 10.5273 3.5042 -2.5103 45 1 7.5790 6.1401 -4.6464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875164170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:55 Heat of formation + Delta-G solvation = -88.767045 kcal Electronic energy + Delta-G solvation = -28666.828581 eV Core-core repulsion = 24776.529687 eV Total energy + Delta-G solvation = -3890.298894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39961 -39.06696 -36.65068 -36.20195 -35.90981 -33.47545 -33.24038 -31.81373 -29.63355 -28.35521 -26.94319 -25.99818 -25.23200 -23.33139 -21.82259 -21.30060 -20.21676 -19.92070 -18.92355 -17.63118 -17.40493 -16.60644 -16.44793 -16.13257 -15.41770 -15.09775 -14.87614 -14.38698 -14.32865 -14.01123 -13.44730 -13.31077 -13.19171 -12.90658 -12.70044 -12.55091 -12.31704 -12.24542 -12.06715 -11.85387 -11.67637 -11.62554 -11.53604 -11.43338 -11.08357 -10.88435 -10.60205 -10.49489 -10.39017 -10.32328 -10.26512 -10.07546 -9.89099 -9.16815 -9.14598 -8.67404 -8.16161 -7.71671 -7.60971 -7.18734 -4.59733 2.02036 2.45319 2.66892 2.85079 2.90381 3.12080 3.31937 3.43525 3.62550 3.67330 3.74978 4.30022 4.81656 4.83247 4.95474 5.04113 5.12614 5.17732 5.19388 5.33352 5.51490 5.57552 5.60303 5.65668 5.68344 5.79693 5.82596 5.96528 6.03554 6.07360 6.23892 6.35371 6.41159 6.51173 6.56662 6.62835 6.88537 6.93088 6.99357 7.18744 7.21388 7.30812 7.45551 7.99769 8.08773 8.13464 8.37861 8.61740 9.34809 9.59319 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.004209 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.387878 B = 6650.375029 C = 7651.941179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.441 3.559 5 O -0.494 6.494 6 C 0.133 3.867 7 N -0.612 5.612 8 C 0.126 3.874 9 C -0.104 4.104 10 C -0.142 4.142 11 C -0.149 4.149 12 C 0.618 3.382 13 O -0.559 6.559 14 C -0.443 4.443 15 S 0.009 5.991 16 C -0.196 4.196 17 C -0.168 4.168 18 C 0.118 3.882 19 C -0.436 4.436 20 H 0.105 0.895 21 C 0.042 3.958 22 N -0.764 5.764 23 Si 1.071 2.929 24 H -0.272 1.272 25 H -0.260 1.260 26 H -0.284 1.284 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.140 0.860 44 H 0.116 0.884 45 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -3.318 11.402 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.281 3.719 5 O -0.379 6.379 6 C 0.007 3.993 7 N -0.347 5.347 8 C 0.001 3.999 9 C -0.124 4.124 10 C -0.200 4.200 11 C -0.207 4.207 12 C 0.417 3.583 13 O -0.440 6.440 14 C -0.561 4.561 15 S 0.267 5.733 16 C -0.329 4.329 17 C -0.201 4.201 18 C 0.108 3.892 19 C -0.466 4.466 20 H 0.123 0.877 21 C -0.186 4.186 22 N -0.383 5.383 23 Si 0.897 3.103 24 H -0.199 1.199 25 H -0.185 1.185 26 H -0.212 1.212 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.158 0.842 44 H 0.133 0.867 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.175 -4.199 11.236 13.063 hybrid contribution -1.112 0.498 -0.287 1.252 sum -6.287 -3.701 10.949 13.157 Atomic orbital electron populations 1.21789 0.92839 1.02715 1.03411 1.22948 0.95103 0.80830 1.02439 1.86502 1.25126 1.31989 1.84545 1.24894 0.80290 0.94234 0.72514 1.90669 1.60280 1.42902 1.44099 1.20723 0.82805 0.89745 1.06073 1.47637 1.02911 1.76820 1.07284 1.21829 0.96288 0.97214 0.84555 1.21423 0.98443 0.96292 0.96217 1.21774 1.00098 1.01661 0.96470 1.22325 1.01934 0.98131 0.98294 1.16878 0.86150 0.73811 0.81461 1.90676 1.69648 1.52862 1.30839 1.21801 0.92578 1.33570 1.08189 1.82820 0.96261 1.63556 1.30643 1.25401 1.02134 1.04735 1.00614 1.21355 0.96623 1.03692 0.98441 1.17626 0.88553 0.90152 0.92846 1.20851 0.97997 1.23890 1.03813 0.87721 1.27643 1.06097 0.92887 0.91949 1.70475 1.23053 1.10711 1.34091 0.83751 0.72660 0.77761 0.76112 1.19918 1.18475 1.21176 0.91618 0.91460 0.90485 0.91386 0.91559 0.87170 0.86087 0.91752 0.89331 0.92164 0.91890 0.92861 0.93436 0.90733 0.95088 0.90904 0.84244 0.86714 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.36 10.22 -39.26 -0.40 -5.76 16 4 C 0.44 7.62 8.02 36.00 0.29 7.91 16 5 O -0.49 -10.25 16.18 -18.75 -0.30 -10.55 16 6 C 0.13 2.15 5.96 -5.19 -0.03 2.12 16 7 N -0.61 -11.87 1.79 -176.76 -0.32 -12.19 16 8 C 0.13 2.10 4.98 -4.04 -0.02 2.08 16 9 C -0.10 -1.58 3.17 -90.62 -0.29 -1.87 16 10 C -0.14 -1.81 9.17 37.16 0.34 -1.47 16 11 C -0.15 -2.79 7.26 37.16 0.27 -2.52 16 12 C 0.62 14.91 5.77 -13.05 -0.08 14.83 16 13 O -0.56 -15.32 14.70 5.14 0.08 -15.24 16 14 C -0.44 -10.63 3.26 -35.88 -0.12 -10.75 16 15 S 0.01 0.18 17.08 -107.50 -1.84 -1.65 16 16 C -0.20 -3.90 10.90 28.86 0.31 -3.59 16 17 C -0.17 -3.77 8.10 -39.12 -0.32 -4.09 16 18 C 0.12 2.97 5.08 -106.20 -0.54 2.43 16 19 C -0.44 -11.60 9.03 -37.93 -0.34 -11.94 16 20 H 0.10 3.07 6.36 -52.49 -0.33 2.73 16 21 C 0.04 1.03 5.44 -17.28 -0.09 0.94 16 22 N -0.76 -19.13 13.64 55.57 0.76 -18.37 16 23 Si 1.07 22.39 24.86 -169.99 -4.23 18.16 16 24 H -0.27 -5.26 6.74 56.52 0.38 -4.88 16 25 H -0.26 -5.43 6.71 56.52 0.38 -5.05 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 31 H 0.07 0.77 8.13 -51.92 -0.42 0.35 16 32 H 0.11 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.12 2.03 7.44 -51.93 -0.39 1.64 16 34 H 0.06 0.93 8.03 -51.93 -0.42 0.51 16 35 H 0.09 1.62 3.48 -20.74 -0.07 1.55 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 1.64 4.51 -51.93 -0.23 1.41 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 1.44 5.23 -51.79 -0.27 1.17 16 43 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.12 2.45 2.91 -52.49 -0.15 2.30 16 45 H 0.30 7.31 8.73 -40.82 -0.36 6.95 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -30.95 365.87 -6.86 -37.81 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.13 Total: 8.13 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 0.00 Total: -5.85 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.44 Total: -30.56 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.63 Total: -31.56 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.23 Total: 18.16 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -1.84 Total: -1.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.95 -6.86 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875164170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.954 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds