Wall clock time and date at job start Tue Mar 31 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47461 * 2 1 4 4 C 1.34230 * 117.00112 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99953 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47375 * 179.97438 * 6 4 3 8 8 C 1.46500 * 120.00491 * 270.00906 * 7 6 4 9 9 C 1.53007 * 109.46664 * 264.40111 * 8 7 6 10 10 C 1.53001 * 109.46902 * 185.24201 * 9 8 7 11 11 C 1.52997 * 109.46913 * 305.24143 * 9 8 7 12 12 C 1.34785 * 119.99547 * 89.99777 * 7 6 4 13 13 O 1.21759 * 119.99750 * 358.72841 * 12 7 6 14 14 C 1.46234 * 119.99835 * 178.72167 * 12 7 6 15 15 S 1.75671 * 125.22848 * 32.63569 * 14 12 7 16 16 C 1.75476 * 92.09334 * 179.97438 * 15 14 12 17 17 C 1.32769 * 111.36066 * 359.74127 * 16 15 14 18 18 C 1.39546 * 125.23210 * 212.61481 * 14 12 7 19 19 C 1.40551 * 123.70907 * 0.02562 * 18 14 12 20 20 H 1.07997 * 120.00207 * 358.61742 * 19 18 14 21 21 C 1.40304 * 119.99853 * 178.62025 * 19 18 14 22 22 N 1.30633 * 120.00173 * 212.62814 * 21 19 18 23 23 Si 1.86807 * 119.99800 * 32.62933 * 21 19 18 24 24 H 1.48496 * 109.46721 * 263.42595 * 23 21 19 25 25 H 1.48499 * 109.47309 * 23.42606 * 23 21 19 26 26 H 1.48497 * 109.46811 * 143.42943 * 23 21 19 27 27 H 1.08997 * 109.47055 * 300.00340 * 1 2 3 28 28 H 1.09002 * 109.46909 * 60.00342 * 1 2 3 29 29 H 1.09002 * 109.47463 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46977 * 239.99144 * 2 1 3 31 31 H 1.09007 * 109.46790 * 120.00099 * 2 1 3 32 32 H 1.09004 * 109.47155 * 59.99832 * 6 4 3 33 33 H 1.08993 * 109.47579 * 299.99966 * 6 4 3 34 34 H 1.08996 * 109.46883 * 24.39641 * 8 7 6 35 35 H 1.08999 * 109.47305 * 144.40366 * 8 7 6 36 36 H 1.08998 * 109.47174 * 65.24042 * 9 8 7 37 37 H 1.08998 * 109.47336 * 59.99940 * 10 9 8 38 38 H 1.08998 * 109.46816 * 179.97438 * 10 9 8 39 39 H 1.09005 * 109.47066 * 299.99875 * 10 9 8 40 40 H 1.08997 * 109.47401 * 48.61672 * 11 9 8 41 41 H 1.09003 * 109.46729 * 168.61963 * 11 9 8 42 42 H 1.09001 * 109.47220 * 288.61524 * 11 9 8 43 43 H 1.07994 * 124.32392 * 180.02562 * 16 15 14 44 44 H 1.07998 * 122.78684 * 180.23757 * 17 16 15 45 45 H 0.97006 * 120.00218 * 354.96547 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9208 2.9372 0.0000 7 7 5.3838 2.8606 0.0014 8 6 6.1143 2.8230 1.2707 9 6 6.5654 4.2373 1.6414 10 6 7.4386 4.1814 2.8966 11 6 7.3708 4.8349 0.4860 12 6 6.0578 2.8244 -1.1653 13 8 5.4496 2.8320 -2.2201 14 6 7.5193 2.7761 -1.1642 15 16 8.5061 1.9837 0.0541 16 6 9.9920 2.4418 -0.7590 17 6 9.7447 3.1333 -1.8651 18 6 8.3445 3.3520 -2.1310 19 6 7.8635 4.0625 -3.2442 20 1 6.8000 4.1677 -3.3993 21 6 8.7652 4.6349 -4.1541 22 7 8.4582 5.7479 -4.7653 23 14 10.4046 3.8054 -4.4916 24 1 11.4575 4.4298 -3.6510 25 1 10.3042 2.3599 -4.1666 26 1 10.7552 3.9672 -5.9255 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.5844 3.4699 0.8895 33 1 3.5854 3.4689 -0.8904 34 1 5.4634 2.4325 2.0529 35 1 6.9872 2.1782 1.1687 36 1 5.6910 4.8587 1.8344 37 1 8.3130 3.5600 2.7036 38 1 7.7603 5.1889 3.1604 39 1 6.8647 3.7556 3.7197 40 1 6.8279 4.6911 -0.4481 41 1 7.5192 5.9008 0.6597 42 1 8.3394 4.3388 0.4234 43 1 10.9814 2.1893 -0.4074 44 1 10.5273 3.5042 -2.5103 45 1 7.5790 6.1401 -4.6464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875164170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:54 Heat of formation + Delta-G solvation = -107.385184 kcal Electronic energy + Delta-G solvation = -28667.635924 eV Core-core repulsion = 24776.529687 eV Total energy + Delta-G solvation = -3891.106237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81604 -40.66292 -38.26946 -37.67431 -37.52561 -35.29467 -34.70974 -32.76263 -31.26259 -29.90923 -28.51826 -27.38608 -26.73808 -24.43550 -23.43605 -22.75877 -21.70147 -21.42318 -20.63169 -19.01709 -18.93636 -18.39314 -17.71803 -17.48761 -17.04178 -16.78366 -16.35829 -15.88622 -15.62357 -15.25615 -15.11755 -15.04683 -14.42785 -14.28213 -14.08318 -13.91239 -13.75104 -13.66058 -13.39089 -13.27277 -13.12900 -12.89493 -12.86416 -12.59487 -12.55057 -12.45077 -12.10698 -12.08007 -11.71032 -11.68594 -11.59495 -11.57745 -11.50443 -10.99399 -10.72573 -10.57186 -9.78235 -9.61411 -9.42726 -8.85409 -6.50487 0.27727 1.06972 1.17489 1.22151 1.41886 1.45668 1.63883 1.71292 1.86051 2.05572 2.16601 2.51688 3.14736 3.66692 3.83348 3.91697 3.94738 4.04148 4.05911 4.22348 4.27802 4.29300 4.31698 4.42499 4.51090 4.66740 4.77681 4.81935 4.87935 4.94653 4.96641 5.08273 5.18993 5.19793 5.22921 5.25507 5.30473 5.36044 5.37432 5.55276 5.58636 5.63287 5.77459 6.16092 6.30121 6.50518 6.65210 6.76963 7.52213 7.66714 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.004209 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.387878 B = 6650.375029 C = 7651.941179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.359 6.359 4 C 0.446 3.554 5 O -0.534 6.534 6 C 0.127 3.873 7 N -0.608 5.608 8 C 0.120 3.880 9 C -0.096 4.096 10 C -0.137 4.137 11 C -0.144 4.144 12 C 0.610 3.390 13 O -0.608 6.608 14 C -0.461 4.461 15 S 0.069 5.931 16 C -0.179 4.179 17 C -0.204 4.204 18 C 0.107 3.893 19 C -0.480 4.480 20 H 0.056 0.944 21 C 0.015 3.985 22 N -0.785 5.785 23 Si 1.103 2.897 24 H -0.239 1.239 25 H -0.261 1.261 26 H -0.275 1.275 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.035 0.965 42 H 0.060 0.940 43 H 0.186 0.814 44 H 0.127 0.873 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 -4.414 15.102 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.288 3.712 5 O -0.423 6.423 6 C 0.002 3.998 7 N -0.340 5.340 8 C -0.003 4.003 9 C -0.116 4.116 10 C -0.194 4.194 11 C -0.202 4.202 12 C 0.408 3.592 13 O -0.494 6.494 14 C -0.579 4.579 15 S 0.329 5.671 16 C -0.312 4.312 17 C -0.237 4.237 18 C 0.097 3.903 19 C -0.511 4.511 20 H 0.075 0.925 21 C -0.207 4.207 22 N -0.405 5.405 23 Si 0.923 3.077 24 H -0.165 1.165 25 H -0.185 1.185 26 H -0.202 1.202 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.180 0.820 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.203 0.797 44 H 0.144 0.856 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.513 -5.276 15.002 16.531 hybrid contribution -1.567 0.708 -1.228 2.113 sum -6.080 -4.569 13.774 15.734 Atomic orbital electron populations 1.21811 0.89722 1.04480 1.03887 1.23292 0.97498 0.79347 1.02085 1.86498 1.23513 1.33737 1.83778 1.24942 0.80902 0.93944 0.71407 1.90650 1.61310 1.44092 1.46238 1.21034 0.80973 0.89831 1.07998 1.47544 1.04399 1.75199 1.06890 1.22081 0.96262 0.98132 0.83874 1.21401 0.99135 0.95141 0.95916 1.21734 0.99593 1.02509 0.95597 1.22201 1.01261 0.98734 0.98023 1.17168 0.86686 0.73229 0.82155 1.90640 1.70683 1.54964 1.33092 1.22307 0.93471 1.32534 1.09621 1.82551 0.94923 1.61664 1.28004 1.25986 1.04285 1.01992 0.98956 1.21367 0.95343 1.06424 1.00518 1.17951 0.90617 0.89499 0.92220 1.20614 0.96008 1.27771 1.06678 0.92545 1.28788 1.08637 0.92432 0.90825 1.70549 1.22605 1.11645 1.35709 0.83389 0.70241 0.77007 0.77063 1.16486 1.18534 1.20213 0.90437 0.91650 0.88062 0.92893 0.90889 0.81961 0.87296 0.88323 0.90751 0.90243 0.92528 0.91850 0.90738 0.94833 0.94577 0.92149 0.79680 0.85561 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.05 1.20 6.19 71.98 0.45 1.64 16 3 O -0.36 -10.20 10.22 -51.42 -0.53 -10.73 16 4 C 0.45 15.19 8.02 71.23 0.57 15.76 16 5 O -0.53 -22.13 16.18 21.96 0.36 -21.77 16 6 C 0.13 4.01 5.96 85.63 0.51 4.52 16 7 N -0.61 -23.40 1.79 -831.33 -1.49 -24.89 16 8 C 0.12 3.70 4.98 86.38 0.43 4.13 16 9 C -0.10 -2.66 3.17 -10.79 -0.03 -2.70 16 10 C -0.14 -2.90 9.17 71.98 0.66 -2.24 16 11 C -0.14 -5.33 7.26 71.98 0.52 -4.81 16 12 C 0.61 30.55 5.77 86.32 0.50 31.05 16 13 O -0.61 -35.84 14.70 -4.54 -0.07 -35.91 16 14 C -0.46 -22.58 3.26 24.66 0.08 -22.50 16 15 S 0.07 2.66 17.08 -56.49 -0.96 1.69 16 16 C -0.18 -6.61 10.90 66.64 0.73 -5.88 16 17 C -0.20 -8.96 8.10 22.60 0.18 -8.78 16 18 C 0.11 5.58 5.08 -20.89 -0.11 5.47 16 19 C -0.48 -27.54 9.03 23.34 0.21 -27.33 16 20 H 0.06 3.68 6.36 -2.91 -0.02 3.67 16 21 C 0.01 0.77 5.44 85.37 0.46 1.24 16 22 N -0.79 -41.89 13.64 21.89 0.30 -41.59 16 23 Si 1.10 45.41 24.86 68.60 1.71 47.12 16 24 H -0.24 -8.58 6.74 99.48 0.67 -7.91 16 25 H -0.26 -10.66 6.71 99.48 0.67 -9.99 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.07 1.61 8.13 -2.38 -0.02 1.59 16 32 H 0.16 3.36 8.07 -2.38 -0.02 3.34 16 33 H 0.11 3.78 7.44 -2.39 -0.02 3.76 16 34 H 0.10 2.42 8.03 -2.39 -0.02 2.40 16 35 H 0.08 2.55 3.48 -22.22 -0.08 2.47 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.03 1.51 4.51 -2.39 -0.01 1.50 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 2.33 5.23 -2.47 -0.01 2.32 16 43 H 0.19 5.10 8.06 -2.91 -0.02 5.07 16 44 H 0.13 5.19 2.91 -2.91 -0.01 5.18 16 45 H 0.28 15.37 8.73 -92.70 -0.81 14.56 16 Total: -1.00 -74.86 365.87 6.05 -68.81 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.83 Total: 29.08 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.90 Total: -11.81 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -1.19 Total: -66.47 kcal Atomic # 8 Polarization: -68.17 SS G_CDS: -0.24 Total: -68.41 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.71 Total: 47.12 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -0.96 Total: 1.69 kcal Total: -74.86 6.05 -68.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875164170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.578 kcal (2) G-P(sol) polarization free energy of solvation -74.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds