Wall clock time and date at job start Tue Mar 31 2020 22:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 N 1.30753 * 126.35552 * 269.68593 * 14 13 12 16 16 N 1.28428 * 110.63703 * 179.85399 * 15 14 13 17 17 N 1.28949 * 110.20091 * 0.42005 * 16 15 14 18 18 N 1.35036 * 126.36455 * 89.99674 * 14 13 12 19 19 C 1.40349 * 127.38608 * 359.96048 * 18 14 13 20 20 C 1.38821 * 120.00487 * 324.72181 * 19 18 14 21 21 C 1.38064 * 119.98927 * 179.76786 * 20 19 18 22 22 C 1.38753 * 120.00590 * 0.53197 * 21 20 19 23 23 O 1.35933 * 119.98865 * 179.72531 * 22 21 20 24 24 C 1.42896 * 117.00127 * 359.97249 * 23 22 21 25 25 F 1.39898 * 109.47420 * 300.00369 * 24 23 22 26 26 F 1.39897 * 109.46906 * 60.00361 * 24 23 22 27 27 C 1.38748 * 120.01722 * 359.69761 * 22 21 20 28 28 C 1.38056 * 120.00881 * 0.04677 * 27 22 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 34 34 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 35 35 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 36 36 H 1.07998 * 120.00984 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.99605 * 180.22862 * 21 20 19 38 38 H 1.08999 * 109.46836 * 180.02562 * 24 23 22 39 39 H 1.08001 * 119.99285 * 180.02562 * 27 22 21 40 40 H 1.08009 * 120.00271 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 7 1.8576 -1.1540 4.4376 16 7 2.5990 -1.6849 5.3420 17 7 3.8404 -1.4249 5.1093 18 7 3.8772 -0.6551 3.9332 19 6 5.0114 -0.1368 3.2892 20 6 5.0493 -0.0618 1.9035 21 6 6.1633 0.4526 1.2705 22 6 7.2491 0.8844 2.0188 23 8 8.3479 1.3856 1.3949 24 6 8.3161 1.4378 -0.0327 25 9 8.1507 0.1458 -0.5431 26 9 7.2492 2.2427 -0.4463 27 6 7.2134 0.8051 3.4035 28 6 6.0977 0.2957 4.0374 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7093 1.1619 -3.4844 33 1 1.4496 -1.4980 1.4100 34 1 2.7589 1.0462 2.1181 35 1 1.0871 0.6162 2.5525 36 1 4.2060 -0.4019 1.3209 37 1 6.1914 0.5144 0.1927 38 1 9.2522 1.8568 -0.4019 39 1 8.0586 1.1417 3.9855 40 1 6.0702 0.2337 5.1154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878816103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:01 Heat of formation + Delta-G solvation = 11.611248 kcal Electronic energy + Delta-G solvation = -29657.677487 eV Core-core repulsion = 25146.643344 eV Total energy + Delta-G solvation = -4511.034143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.54096 -47.52807 -43.05702 -40.29063 -38.12734 -36.56857 -34.62088 -33.26029 -31.84085 -31.33106 -29.84650 -28.91843 -26.54523 -25.57974 -25.13595 -24.11003 -23.40384 -22.03769 -21.14690 -20.45415 -19.29300 -18.65893 -18.13467 -18.10791 -16.64893 -16.61894 -16.26830 -15.17131 -15.13525 -14.95523 -14.82628 -14.68514 -14.33144 -14.16933 -13.84850 -13.83604 -13.67299 -13.61682 -13.24370 -13.02772 -12.99746 -12.46505 -12.35991 -12.03662 -11.95291 -11.73594 -11.28350 -11.04986 -10.94627 -10.89029 -10.87505 -10.68243 -10.29345 -10.24272 -9.94980 -9.32800 -9.22617 -8.50986 -8.48763 -7.71206 -6.11809 -4.16535 0.42313 1.03609 1.41525 1.85764 2.23108 2.37909 3.25636 3.26945 3.31732 3.33212 3.34810 3.99645 4.01906 4.33165 4.38087 4.40348 4.55964 4.67033 4.72122 4.98733 5.10688 5.15929 5.20600 5.36942 5.46056 5.51093 5.69126 5.74513 5.76220 6.03049 6.19006 6.26664 6.43516 6.52873 6.70987 6.79994 6.88421 7.04700 7.57445 7.67432 8.01451 8.18049 8.33529 8.54698 8.89057 9.49567 10.94959 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007155 B = 0.005477 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3912.198257 B = 5110.745987 C = 8422.645300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 H 0.040 0.960 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.679 5.679 13 C 0.124 3.876 14 C 0.271 3.729 15 N -0.331 5.331 16 N -0.041 5.041 17 N -0.091 5.091 18 N -0.317 5.317 19 C 0.095 3.905 20 C -0.065 4.065 21 C -0.168 4.168 22 C 0.117 3.883 23 O -0.320 6.320 24 C 0.410 3.590 25 F -0.194 7.194 26 F -0.192 7.192 27 C -0.128 4.128 28 C -0.065 4.065 29 H 0.009 0.991 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.262 0.738 33 H 0.340 0.660 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.183 0.817 37 H 0.150 0.850 38 H 0.183 0.817 39 H 0.145 0.855 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.744 4.295 7.467 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.107 3.893 3 H 0.057 0.943 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.009 4.009 14 C -0.005 4.005 15 N -0.183 5.183 16 N -0.036 5.036 17 N -0.076 5.076 18 N -0.108 5.108 19 C 0.003 3.997 20 C -0.085 4.085 21 C -0.188 4.188 22 C 0.073 3.927 23 O -0.238 6.238 24 C 0.320 3.680 25 F -0.176 7.176 26 F -0.174 7.174 27 C -0.147 4.147 28 C -0.086 4.086 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.200 0.800 37 H 0.168 0.832 38 H 0.199 0.801 39 H 0.163 0.837 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.213 3.760 8.422 17.791 hybrid contribution -0.532 0.011 -1.592 1.678 sum 14.682 3.771 6.830 16.626 Atomic orbital electron populations 1.22446 0.99982 0.99763 1.00919 1.19263 0.90259 0.94496 0.85241 0.94258 1.21003 1.31064 1.12752 0.89257 0.91858 1.24901 0.95092 0.95079 0.99005 1.69852 1.36702 1.22881 1.23761 0.86573 0.79214 0.79709 0.81999 1.20283 1.21364 1.20207 1.60965 1.58919 1.09075 1.02265 1.20695 1.01113 0.94372 0.84713 1.26116 0.80589 0.95984 0.97852 1.74492 1.26981 1.14269 1.02550 1.77978 0.95556 1.13369 1.16679 1.82576 1.15287 1.10726 0.99010 1.48761 1.06215 1.36428 1.19364 1.17495 0.86633 1.04145 0.91426 1.21830 1.00030 0.94837 0.91796 1.21578 0.92954 1.02676 1.01557 1.19048 0.85912 0.95266 0.92516 1.86614 1.38684 1.78651 1.19845 1.23382 0.90744 0.75878 0.77976 1.93134 1.96489 1.41059 1.86932 1.93151 1.60939 1.73358 1.89924 1.20202 0.99503 1.04224 0.90732 1.20768 0.91097 0.96195 1.00490 0.97212 0.94926 0.88928 0.92788 0.84206 0.88450 0.90795 0.80022 0.83207 0.80094 0.83725 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 8.94 37.16 0.33 -3.44 16 2 C 0.21 4.75 2.57 -68.87 -0.18 4.57 16 3 H 0.04 0.94 7.80 -51.93 -0.40 0.53 16 4 C -0.50 -12.62 8.84 -34.44 -0.30 -12.92 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -23.83 11.32 55.43 0.63 -23.21 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.68 -12.64 4.56 -109.22 -0.50 -13.14 16 13 C 0.12 1.99 4.86 -4.98 -0.02 1.97 16 14 C 0.27 4.50 7.48 -155.21 -1.16 3.34 16 15 N -0.33 -5.94 12.16 32.75 0.40 -5.54 16 16 N -0.04 -0.74 13.39 60.35 0.81 0.07 16 17 N -0.09 -1.54 13.75 60.35 0.83 -0.71 16 18 N -0.32 -5.07 3.78 -7.95 -0.03 -5.10 16 19 C 0.09 1.35 6.35 -83.53 -0.53 0.82 16 20 C -0.06 -0.97 8.41 -39.43 -0.33 -1.30 16 21 C -0.17 -2.32 8.25 -39.45 -0.33 -2.64 16 22 C 0.12 1.37 6.48 -39.20 -0.25 1.12 16 23 O -0.32 -3.18 10.43 -19.53 -0.20 -3.38 16 24 C 0.41 3.45 5.98 101.05 0.60 4.06 16 25 F -0.19 -2.13 15.58 2.25 0.04 -2.10 16 26 F -0.19 -2.16 15.58 2.25 0.04 -2.12 16 27 C -0.13 -1.32 9.98 -39.46 -0.39 -1.72 16 28 C -0.07 -0.76 9.81 -39.43 -0.39 -1.15 16 29 H 0.01 0.18 7.45 -51.93 -0.39 -0.21 16 30 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.34 6.38 8.46 -39.29 -0.33 6.05 16 34 H 0.10 1.49 6.96 -51.93 -0.36 1.13 16 35 H 0.07 1.16 7.44 -51.93 -0.39 0.77 16 36 H 0.18 3.10 5.17 -52.49 -0.27 2.83 16 37 H 0.15 2.15 5.09 -52.49 -0.27 1.88 16 38 H 0.18 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -28.84 347.62 -4.79 -33.63 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -3.96 Total: 6.82 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.05 Total: -5.81 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 2.14 Total: -47.63 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: -0.20 Total: -3.38 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.07 Total: -4.22 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.84 -4.79 -33.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878816103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.238 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds