Wall clock time and date at job start Tue Mar 31 2020 22:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 N 1.30753 * 126.35552 * 269.68593 * 14 13 12 16 16 N 1.28428 * 110.63703 * 179.85399 * 15 14 13 17 17 N 1.28949 * 110.20091 * 0.42005 * 16 15 14 18 18 N 1.35036 * 126.36455 * 89.99674 * 14 13 12 19 19 C 1.40349 * 127.38608 * 359.96048 * 18 14 13 20 20 C 1.38821 * 120.00487 * 324.72181 * 19 18 14 21 21 C 1.38064 * 119.98927 * 179.76786 * 20 19 18 22 22 C 1.38753 * 120.00590 * 0.53197 * 21 20 19 23 23 O 1.35933 * 119.98865 * 179.72531 * 22 21 20 24 24 C 1.42896 * 117.00127 * 359.97249 * 23 22 21 25 25 F 1.39898 * 109.47420 * 300.00369 * 24 23 22 26 26 F 1.39897 * 109.46906 * 60.00361 * 24 23 22 27 27 C 1.38748 * 120.01722 * 359.69761 * 22 21 20 28 28 C 1.38056 * 120.00881 * 0.04677 * 27 22 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 34 34 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 35 35 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 36 36 H 1.07998 * 120.00984 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.99605 * 180.22862 * 21 20 19 38 38 H 1.08999 * 109.46836 * 180.02562 * 24 23 22 39 39 H 1.08001 * 119.99285 * 180.02562 * 27 22 21 40 40 H 1.08009 * 120.00271 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 7 1.8576 -1.1540 4.4376 16 7 2.5990 -1.6849 5.3420 17 7 3.8404 -1.4249 5.1093 18 7 3.8772 -0.6551 3.9332 19 6 5.0114 -0.1368 3.2892 20 6 5.0493 -0.0618 1.9035 21 6 6.1633 0.4526 1.2705 22 6 7.2491 0.8844 2.0188 23 8 8.3479 1.3856 1.3949 24 6 8.3161 1.4378 -0.0327 25 9 8.1507 0.1458 -0.5431 26 9 7.2492 2.2427 -0.4463 27 6 7.2134 0.8051 3.4035 28 6 6.0977 0.2957 4.0374 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7093 1.1619 -3.4844 33 1 1.4496 -1.4980 1.4100 34 1 2.7589 1.0462 2.1181 35 1 1.0871 0.6162 2.5525 36 1 4.2060 -0.4019 1.3209 37 1 6.1914 0.5144 0.1927 38 1 9.2522 1.8568 -0.4019 39 1 8.0586 1.1417 3.9855 40 1 6.0702 0.2337 5.1154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878816103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:00 Heat of formation + Delta-G solvation = -6.447846 kcal Electronic energy + Delta-G solvation = -29658.460588 eV Core-core repulsion = 25146.643344 eV Total energy + Delta-G solvation = -4511.817244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.30937 -48.31837 -44.37199 -41.22858 -39.09428 -38.13449 -35.85179 -34.91632 -33.43045 -32.33888 -31.00600 -30.45287 -27.47183 -27.23269 -26.76914 -25.24981 -24.49068 -23.12687 -22.42441 -22.20740 -20.14355 -19.70719 -19.03922 -18.87378 -18.46687 -17.85526 -17.23499 -16.88750 -16.48045 -16.10885 -16.07398 -15.74749 -15.39091 -15.33154 -14.99713 -14.90419 -14.65264 -14.55153 -14.49122 -14.36697 -14.10946 -13.83447 -13.63560 -13.50884 -13.30616 -12.97378 -12.85667 -12.75533 -12.52867 -12.33671 -12.19299 -12.15430 -12.00420 -11.89005 -11.45496 -11.09154 -10.46656 -10.31777 -9.53016 -9.27862 -8.09460 -6.19140 -0.73735 0.04978 0.25003 0.63840 1.02144 1.44772 1.45826 1.49855 1.52692 2.32274 2.43593 2.59296 2.69595 3.19042 3.20849 3.44077 3.50819 3.59829 3.63323 3.67712 3.76203 3.96812 4.12883 4.22687 4.26663 4.35649 4.37011 4.55521 4.74942 4.83686 4.93184 5.02250 5.06613 5.14855 5.17810 5.32584 5.36610 5.70233 5.77541 5.81455 6.20578 6.46104 6.54335 6.91151 7.21016 7.49874 8.95758 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007155 B = 0.005477 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3912.198257 B = 5110.745987 C = 8422.645300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.224 3.776 3 H 0.022 0.978 4 C -0.513 4.513 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.676 5.676 13 C 0.133 3.867 14 C 0.268 3.732 15 N -0.344 5.344 16 N -0.056 5.056 17 N -0.090 5.090 18 N -0.308 5.308 19 C 0.072 3.928 20 C -0.077 4.077 21 C -0.182 4.182 22 C 0.122 3.878 23 O -0.313 6.313 24 C 0.401 3.599 25 F -0.212 7.212 26 F -0.211 7.211 27 C -0.112 4.112 28 C -0.055 4.055 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.261 0.739 33 H 0.340 0.660 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.243 0.757 39 H 0.183 0.817 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.938 4.802 8.256 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.116 3.884 3 H 0.040 0.960 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.776 3.224 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.308 5.308 13 C 0.001 3.999 14 C -0.009 4.009 15 N -0.196 5.196 16 N -0.050 5.050 17 N -0.075 5.075 18 N -0.099 5.099 19 C -0.019 4.019 20 C -0.097 4.097 21 C -0.202 4.202 22 C 0.077 3.923 23 O -0.230 6.230 24 C 0.313 3.687 25 F -0.194 7.194 26 F -0.193 7.193 27 C -0.131 4.131 28 C -0.075 4.075 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.175 0.825 37 H 0.155 0.845 38 H 0.259 0.741 39 H 0.200 0.800 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.424 4.263 9.218 20.168 hybrid contribution -1.079 -0.111 -1.827 2.125 sum 16.345 4.151 7.390 18.412 Atomic orbital electron populations 1.22288 0.99651 0.99526 1.00660 1.18965 0.90279 0.93334 0.85821 0.96047 1.21284 1.30694 1.12513 0.90651 0.92713 1.25532 0.95415 0.95735 1.01376 1.69962 1.37627 1.23904 1.24071 0.85745 0.78737 0.78677 0.79244 1.20176 1.21136 1.19919 1.60768 1.58543 1.09217 1.02314 1.20618 1.01782 0.93877 0.83666 1.25982 0.80936 0.96182 0.97765 1.74438 1.27580 1.14683 1.02913 1.77960 0.95890 1.14054 1.17120 1.82508 1.14940 1.10588 0.99419 1.48831 1.06523 1.35620 1.18902 1.17692 0.87112 1.05810 0.91301 1.21565 0.99896 0.96155 0.92115 1.21499 0.93684 1.03806 1.01198 1.19189 0.85667 0.94187 0.93207 1.86642 1.37535 1.78042 1.20812 1.24453 0.92132 0.75052 0.77104 1.93100 1.96640 1.42528 1.87093 1.93114 1.62356 1.73782 1.90049 1.20592 0.99872 1.02376 0.90244 1.21024 0.90251 0.94907 1.01275 0.94954 0.95056 0.91598 0.92951 0.84245 0.87769 0.89907 0.82515 0.84467 0.74142 0.79978 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.14 8.94 71.98 0.64 -6.49 16 2 C 0.22 10.07 2.57 44.17 0.11 10.19 16 3 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 4 C -0.51 -26.20 8.84 25.60 0.23 -25.97 16 5 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -49.59 11.32 21.45 0.24 -49.35 16 8 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.68 -25.47 4.56 -499.47 -2.28 -27.75 16 13 C 0.13 4.27 4.86 85.56 0.42 4.69 16 14 C 0.27 8.82 7.48 138.06 1.03 9.85 16 15 N -0.34 -12.20 12.16 -50.30 -0.61 -12.81 16 16 N -0.06 -1.98 13.39 37.02 0.50 -1.48 16 17 N -0.09 -2.95 13.75 37.02 0.51 -2.44 16 18 N -0.31 -9.64 3.78 -179.06 -0.68 -10.32 16 19 C 0.07 1.99 6.35 38.05 0.24 2.23 16 20 C -0.08 -2.31 8.41 22.37 0.19 -2.12 16 21 C -0.18 -4.97 8.25 22.35 0.18 -4.79 16 22 C 0.12 2.62 6.48 22.52 0.15 2.76 16 23 O -0.31 -5.33 10.43 -92.80 -0.97 -6.30 16 24 C 0.40 5.87 5.98 113.37 0.68 6.55 16 25 F -0.21 -4.43 15.58 44.97 0.70 -3.73 16 26 F -0.21 -4.54 15.58 44.97 0.70 -3.84 16 27 C -0.11 -1.95 9.98 22.35 0.22 -1.72 16 28 C -0.05 -1.13 9.81 22.37 0.22 -0.91 16 29 H 0.03 1.24 7.45 -2.39 -0.02 1.22 16 30 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 31 H 0.07 3.29 6.07 -2.38 -0.01 3.28 16 32 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 33 H 0.34 12.85 8.46 -89.69 -0.76 12.09 16 34 H 0.10 3.21 6.96 -2.39 -0.02 3.20 16 35 H 0.08 2.53 7.44 -2.39 -0.02 2.52 16 36 H 0.16 5.54 5.17 -2.91 -0.02 5.52 16 37 H 0.14 4.04 5.09 -2.91 -0.01 4.03 16 38 H 0.24 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -63.00 347.62 5.27 -57.73 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.37 Total: 20.50 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 4.76 Total: -4.33 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -2.32 Total: -104.15 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.97 Total: -6.30 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.40 Total: -7.57 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -63.00 5.27 -57.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878816103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.284 kcal (2) G-P(sol) polarization free energy of solvation -63.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds