Wall clock time and date at job start Tue Mar 31 2020 23:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99435 * 2 1 4 4 O 1.20821 * 120.00846 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99713 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47263 * 179.97438 * 5 3 2 7 7 N 1.46494 * 109.47362 * 179.97438 * 6 5 3 8 8 C 1.36933 * 120.00275 * 270.00118 * 7 6 5 9 9 H 1.07997 * 120.00016 * 326.21426 * 8 7 6 10 10 C 1.38816 * 120.00137 * 146.21733 * 8 7 6 11 11 N 1.31624 * 119.99957 * 337.67549 * 10 8 7 12 12 Si 1.86802 * 120.00192 * 157.68525 * 10 8 7 13 13 H 1.48501 * 109.47103 * 89.99768 * 12 10 8 14 14 H 1.48496 * 109.46913 * 209.99950 * 12 10 8 15 15 H 1.48500 * 109.46905 * 329.99599 * 12 10 8 16 16 C 1.46506 * 120.00113 * 89.99908 * 7 6 5 17 17 C 1.53001 * 109.47025 * 85.78463 * 16 7 6 18 18 S 1.81397 * 109.46967 * 179.97438 * 17 16 7 19 19 C 1.76199 * 102.99946 * 180.02562 * 18 17 16 20 20 C 1.39034 * 120.05196 * 359.73329 * 19 18 17 21 21 C 1.38096 * 120.02913 * 179.70049 * 20 19 18 22 22 C 1.38233 * 120.13418 * 0.59036 * 21 20 19 23 23 C 1.38786 * 120.10169 * 359.68315 * 22 21 20 24 24 O 1.35906 * 120.01436 * 179.97438 * 23 22 21 25 25 C 1.42900 * 116.99548 * 0.02932 * 24 23 22 26 26 C 1.38591 * 119.97300 * 0.02562 * 23 22 21 27 27 H 1.08998 * 109.47327 * 299.99844 * 1 2 3 28 28 H 1.08995 * 109.47153 * 60.00509 * 1 2 3 29 29 H 1.09004 * 109.46658 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47484 * 59.99417 * 5 3 2 31 31 H 1.09004 * 109.46909 * 299.99717 * 5 3 2 32 32 H 1.09004 * 109.46845 * 59.99761 * 6 5 3 33 33 H 1.09004 * 109.47091 * 299.99807 * 6 5 3 34 34 H 0.96994 * 119.99835 * 180.02562 * 11 10 8 35 35 H 1.09009 * 109.46916 * 325.79076 * 16 7 6 36 36 H 1.08991 * 109.47333 * 205.79049 * 16 7 6 37 37 H 1.09000 * 109.46587 * 60.00494 * 17 16 7 38 38 H 1.08991 * 109.47543 * 300.00457 * 17 16 7 39 39 H 1.08002 * 119.98377 * 359.96735 * 20 19 18 40 40 H 1.07996 * 119.93261 * 180.29807 * 21 20 19 41 41 H 1.08000 * 119.94655 * 179.70093 * 22 21 20 42 42 H 1.09004 * 109.46643 * 180.02562 * 25 24 23 43 43 H 1.09003 * 109.47057 * 299.99030 * 25 24 23 44 44 H 1.08994 * 109.47589 * 59.99380 * 25 24 23 45 45 H 1.08001 * 120.07034 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4629 2.8190 -0.0011 8 6 6.1467 2.8553 1.1848 9 1 5.7168 3.3538 2.0409 10 6 7.3924 2.2513 1.2866 11 7 7.7320 1.2975 0.4455 12 14 8.5867 2.7919 2.6173 13 1 8.3677 1.9774 3.8396 14 1 9.9796 2.6023 2.1390 15 1 8.3620 4.2259 2.9312 16 6 6.1946 2.8569 -1.2698 17 6 6.2821 4.3019 -1.7650 18 16 7.1887 4.3489 -3.3355 19 6 7.1883 6.0633 -3.7422 20 6 6.5661 6.9784 -2.9005 21 6 6.5715 8.3227 -3.2166 22 6 7.1843 8.7606 -4.3757 23 6 7.8021 7.8513 -5.2227 24 8 8.4036 8.2837 -6.3621 25 6 8.3622 9.6878 -6.6248 26 6 7.8046 6.5019 -4.9067 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9557 0.7810 -0.8907 31 1 3.9563 0.7807 0.8892 32 1 3.6105 3.2365 0.8889 33 1 3.6100 3.2361 -0.8911 34 1 8.6023 0.8753 0.5168 35 1 5.6712 2.2505 -2.0092 36 1 7.1996 2.4620 -1.1216 37 1 6.8054 4.9082 -1.0256 38 1 5.2772 4.6968 -1.9132 39 1 6.0821 6.6382 -1.9969 40 1 6.0919 9.0327 -2.5592 41 1 7.1825 9.8121 -4.6223 42 1 8.8769 9.8972 -7.5625 43 1 7.3244 10.0129 -6.7000 44 1 8.8530 10.2241 -5.8127 45 1 8.2853 5.7929 -5.5645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879472249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:57 Heat of formation + Delta-G solvation = -81.102854 kcal Electronic energy + Delta-G solvation = -26142.636997 eV Core-core repulsion = 22252.670448 eV Total energy + Delta-G solvation = -3889.966549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.07212 -40.03576 -37.33500 -36.62940 -35.91694 -32.16584 -31.38653 -31.08591 -30.16693 -28.91186 -27.42610 -27.30864 -24.65998 -23.62091 -22.46759 -22.12230 -20.88294 -19.74813 -18.50749 -17.34916 -16.83638 -16.34571 -16.22859 -16.12661 -15.93576 -15.85700 -15.72160 -14.94349 -14.39868 -14.19721 -13.90919 -13.78260 -13.51338 -13.33382 -13.04858 -12.84045 -12.72680 -12.38303 -12.27912 -12.07701 -11.84202 -11.46805 -11.33066 -11.30420 -11.17753 -11.02845 -10.84550 -10.60412 -10.47497 -10.22618 -10.09308 -10.02657 -9.94461 -9.69987 -9.52027 -8.65920 -8.30872 -7.08622 -6.88645 -5.98501 -3.52397 1.25350 1.45933 1.85547 2.60500 2.91169 3.08538 3.22425 3.29536 3.38211 3.40763 3.72835 4.36596 4.73108 4.94507 4.95327 4.97099 5.15023 5.16464 5.19426 5.23932 5.24925 5.29738 5.40421 5.48930 5.54380 5.61546 5.70704 5.78826 5.86343 5.90632 6.05179 6.23687 6.28062 6.34444 6.40363 6.45800 6.59068 6.61005 6.68009 6.77162 6.89493 7.32889 7.48624 7.67314 8.11261 8.30442 8.97111 9.59767 10.14344 11.03132 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.002855 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.518694 B = 9805.203498 C =11899.831153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.519 6.519 5 C -0.131 4.131 6 C 0.159 3.841 7 N -0.570 5.570 8 C -0.272 4.272 9 H 0.067 0.933 10 C 0.017 3.983 11 N -0.880 5.880 12 Si 0.898 3.102 13 H -0.284 1.284 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.156 3.844 17 C -0.114 4.114 18 S -0.118 6.118 19 C -0.036 4.036 20 C -0.170 4.170 21 C -0.061 4.061 22 C -0.224 4.224 23 C 0.140 3.860 24 O -0.318 6.318 25 C 0.029 3.971 26 C -0.141 4.141 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.259 0.741 35 H 0.035 0.965 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 8.705 -9.087 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.306 3.694 4 O -0.407 6.407 5 C -0.171 4.171 6 C 0.032 3.968 7 N -0.289 5.289 8 C -0.401 4.401 9 H 0.085 0.915 10 C -0.185 4.185 11 N -0.521 5.521 12 Si 0.727 3.273 13 H -0.211 1.211 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.028 3.972 17 C -0.265 4.265 18 S 0.128 5.872 19 C -0.150 4.150 20 C -0.194 4.194 21 C -0.081 4.081 22 C -0.246 4.246 23 C 0.093 3.907 24 O -0.232 6.232 25 C -0.066 4.066 26 C -0.166 4.166 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.967 7.703 -9.748 13.042 hybrid contribution -0.234 1.647 1.419 2.187 sum -4.201 9.350 -8.329 13.208 Atomic orbital electron populations 1.23159 0.77660 1.03041 1.02131 1.86598 1.22564 1.34683 1.84379 1.24648 0.92913 0.80718 0.71078 1.90603 1.67605 1.36400 1.46135 1.22415 0.84088 1.04703 1.05914 1.20823 0.85275 0.90444 1.00248 1.43884 0.99576 1.83128 1.02316 1.19113 1.00765 1.29937 0.90313 0.91512 1.25138 1.00175 0.95110 0.98043 1.69942 1.21586 1.21926 1.38642 0.86382 0.80611 0.78926 0.81407 1.21074 1.21228 1.20207 1.20769 1.02187 0.88223 0.86017 1.24851 1.00385 1.07714 0.93513 1.85583 1.70941 1.01033 1.29633 1.21741 0.98476 0.98402 0.96343 1.21238 1.03835 0.93277 1.01042 1.20816 0.96598 0.95246 0.95473 1.21136 1.06379 0.99175 0.97914 1.18800 0.93030 0.92968 0.85907 1.86062 1.72978 1.25475 1.38666 1.23027 1.01938 0.79681 1.02003 1.19903 1.05609 0.93022 0.98083 0.92276 0.92305 0.88673 0.88459 0.87345 0.92574 0.93564 0.93058 0.94650 0.86857 0.89571 0.91060 0.85244 0.85700 0.85696 0.88398 0.92727 0.92698 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.68 10.57 -39.25 -0.41 -6.09 16 3 C 0.46 8.05 7.96 36.01 0.29 8.34 16 4 O -0.52 -9.96 15.73 -18.75 -0.29 -10.26 16 5 C -0.13 -2.39 6.14 -27.88 -0.17 -2.56 16 6 C 0.16 3.18 4.98 -4.04 -0.02 3.16 16 7 N -0.57 -12.89 2.45 -173.23 -0.43 -13.31 16 8 C -0.27 -6.79 9.49 -15.06 -0.14 -6.94 16 9 H 0.07 1.68 7.92 -52.49 -0.42 1.26 16 10 C 0.02 0.43 4.93 -17.43 -0.09 0.34 16 11 N -0.88 -23.32 11.32 55.49 0.63 -22.69 16 12 Si 0.90 20.39 29.61 -169.99 -5.03 15.36 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.16 3.37 5.26 -4.04 -0.02 3.35 16 17 C -0.11 -2.14 4.66 37.16 0.17 -1.97 16 18 S -0.12 -2.07 21.92 -107.50 -2.36 -4.42 16 19 C -0.04 -0.58 6.11 -39.06 -0.24 -0.82 16 20 C -0.17 -2.57 9.36 -39.34 -0.37 -2.94 16 21 C -0.06 -0.79 10.03 -39.64 -0.40 -1.19 16 22 C -0.22 -2.73 9.04 -39.38 -0.36 -3.09 16 23 C 0.14 1.91 6.68 -39.25 -0.26 1.65 16 24 O -0.32 -3.92 10.49 -19.44 -0.20 -4.12 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 C -0.14 -2.14 9.73 -39.22 -0.38 -2.52 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 32 H 0.06 1.15 8.00 -51.93 -0.42 0.73 16 33 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 34 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 35 H 0.04 0.74 8.10 -51.92 -0.42 0.32 16 36 H 0.11 2.80 5.32 -51.93 -0.28 2.52 16 37 H 0.09 1.71 7.76 -51.92 -0.40 1.31 16 38 H 0.07 1.27 7.73 -51.93 -0.40 0.87 16 39 H 0.13 1.97 5.87 -52.49 -0.31 1.66 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 44 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 45 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -28.79 391.74 -8.82 -37.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.70 Total: 4.53 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 0.07 Total: -2.50 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.20 Total: -36.00 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.91 Total: -20.47 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -2.36 Total: -4.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.79 -8.82 -37.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879472249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.490 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds