Wall clock time and date at job start Tue Mar 31 2020 22:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00033 * 2 1 4 4 O 1.20823 * 120.00458 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99803 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47121 * 179.97438 * 5 3 2 7 7 N 1.46508 * 109.46899 * 185.33176 * 6 5 3 8 8 C 1.36935 * 119.99685 * 277.56143 * 7 6 5 9 9 H 1.08005 * 120.00239 * 39.40184 * 8 7 6 10 10 C 1.38811 * 120.00106 * 219.40347 * 8 7 6 11 11 N 1.31618 * 120.00109 * 29.42483 * 10 8 7 12 12 Si 1.86805 * 119.99853 * 209.43266 * 10 8 7 13 13 H 1.48504 * 109.47178 * 89.99870 * 12 10 8 14 14 H 1.48501 * 109.46948 * 209.99370 * 12 10 8 15 15 H 1.48497 * 109.47006 * 329.99428 * 12 10 8 16 16 C 1.46496 * 120.00099 * 97.56913 * 7 6 5 17 17 C 1.50704 * 109.46738 * 275.37224 * 16 7 6 18 18 C 1.38091 * 119.93143 * 267.94238 * 17 16 7 19 19 C 1.38771 * 120.43214 * 180.02562 * 18 17 16 20 20 F 1.35097 * 119.85603 * 179.97438 * 19 18 17 21 21 C 1.37910 * 120.28540 * 359.97438 * 19 18 17 22 22 C 1.39992 * 119.85361 * 359.97438 * 21 19 18 23 23 C 1.46796 * 120.21103 * 180.02562 * 22 21 19 24 24 C 1.50699 * 119.99534 * 0.02562 * 23 22 21 25 25 O 1.21292 * 120.00074 * 179.97438 * 23 22 21 26 26 C 1.38634 * 119.93167 * 87.67737 * 17 16 7 27 27 O 1.35642 * 120.14388 * 359.97291 * 26 17 16 28 28 H 1.09003 * 109.47272 * 300.00796 * 1 2 3 29 29 H 1.09008 * 109.46977 * 60.00303 * 1 2 3 30 30 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47307 * 59.99718 * 5 3 2 32 32 H 1.08998 * 109.47215 * 299.99867 * 5 3 2 33 33 H 1.08991 * 109.46847 * 65.32955 * 6 5 3 34 34 H 1.08996 * 109.46801 * 305.32923 * 6 5 3 35 35 H 0.96997 * 120.00327 * 184.30885 * 11 10 8 36 36 H 1.08999 * 109.47430 * 35.37015 * 16 7 6 37 37 H 1.08993 * 109.47314 * 155.37846 * 16 7 6 38 38 H 1.08003 * 119.78546 * 0.02562 * 18 17 16 39 39 H 1.07999 * 120.07262 * 179.97438 * 21 19 18 40 40 H 1.08998 * 109.47651 * 359.97438 * 24 23 22 41 41 H 1.08996 * 109.47009 * 120.00488 * 24 23 22 42 42 H 1.09002 * 109.46554 * 239.99782 * 24 23 22 43 43 H 0.96702 * 114.00232 * 94.86938 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4576 2.8202 -0.1280 8 6 6.2508 2.6707 0.9782 9 1 5.9982 1.9362 1.7286 10 6 7.3796 3.4632 1.1350 11 7 7.4106 4.6738 0.6194 12 14 8.8547 2.8115 2.0778 13 1 9.7752 2.1196 1.1402 14 1 9.5666 3.9420 2.7262 15 1 8.3950 1.8550 3.1165 16 6 6.0662 3.0584 -1.4391 17 6 6.2088 1.7493 -2.1719 18 6 7.3779 1.0225 -2.0631 19 6 7.5206 -0.1839 -2.7338 20 9 8.6697 -0.8851 -2.6196 21 6 6.4945 -0.6701 -3.5166 22 6 5.3036 0.0564 -3.6345 23 6 4.2062 -0.4541 -4.4651 24 6 4.3593 -1.7643 -5.1937 25 8 3.1759 0.1783 -4.5642 26 6 5.1639 1.2745 -2.9496 27 8 4.0132 1.9854 -3.0518 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.9564 0.7804 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 3.6915 3.2126 0.9332 34 1 3.5337 3.2583 -0.8391 35 1 8.2210 5.2039 0.6746 36 1 5.4326 3.7312 -2.0170 37 1 7.0495 3.5095 -1.3066 38 1 8.1866 1.3955 -1.4520 39 1 6.6094 -1.6092 -4.0374 40 1 5.3437 -2.1832 -4.9852 41 1 3.5897 -2.4591 -4.8574 42 1 4.2552 -1.5980 -6.2659 43 1 3.9766 2.5655 -3.8246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879473585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:16 Heat of formation + Delta-G solvation = -162.391142 kcal Electronic energy + Delta-G solvation = -30883.467319 eV Core-core repulsion = 26423.762669 eV Total energy + Delta-G solvation = -4459.704650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.67367 -40.27062 -39.93721 -38.32579 -36.34915 -36.24117 -35.63211 -32.38599 -32.15590 -30.45040 -29.28138 -29.00251 -27.38791 -25.90107 -24.39391 -23.71059 -21.94076 -21.05280 -19.95066 -19.44358 -18.16377 -17.30301 -17.20211 -16.75611 -16.51938 -16.10235 -16.05802 -15.60389 -15.20043 -15.15781 -14.79457 -14.76602 -14.51682 -14.04469 -13.74720 -13.49344 -13.40185 -13.22304 -12.92660 -12.56972 -12.28488 -12.21331 -12.10599 -11.97611 -11.68623 -11.61076 -11.35426 -11.15806 -10.91763 -10.69137 -10.60099 -10.50727 -10.36140 -10.15480 -9.97612 -9.94570 -9.47162 -8.75651 -8.56335 -8.19891 -6.86994 -6.02929 -3.55246 0.68678 1.31697 2.47678 2.72518 3.15079 3.26133 3.36901 3.38752 3.68581 4.00254 4.36214 4.38912 4.45969 4.79175 4.93660 5.07433 5.22588 5.27028 5.27526 5.28662 5.32750 5.40623 5.46609 5.56330 5.69639 5.73607 5.85167 5.88281 5.98064 6.10327 6.18703 6.25391 6.34847 6.46907 6.74258 6.78513 6.85184 6.94568 7.07265 7.18458 7.56763 7.68519 7.93182 8.21295 8.31489 8.95402 9.57108 10.19007 10.95969 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008088 B = 0.005918 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.084015 B = 4730.028490 C = 7106.792844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.468 3.532 4 O -0.513 6.513 5 C -0.129 4.129 6 C 0.166 3.834 7 N -0.565 5.565 8 C -0.275 4.275 9 H 0.063 0.937 10 C 0.027 3.973 11 N -0.863 5.863 12 Si 0.881 3.119 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.274 1.274 16 C 0.191 3.809 17 C -0.089 4.089 18 C -0.091 4.091 19 C 0.074 3.926 20 F -0.143 7.143 21 C -0.119 4.119 22 C -0.189 4.189 23 C 0.395 3.605 24 C -0.201 4.201 25 O -0.446 6.446 26 C 0.160 3.840 27 O -0.469 6.469 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.257 0.743 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 -10.888 -10.025 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.312 3.688 4 O -0.400 6.400 5 C -0.169 4.169 6 C 0.039 3.961 7 N -0.282 5.282 8 C -0.404 4.404 9 H 0.081 0.919 10 C -0.176 4.176 11 N -0.501 5.501 12 Si 0.709 3.291 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.199 1.199 16 C 0.064 3.936 17 C -0.094 4.094 18 C -0.111 4.111 19 C 0.055 3.945 20 F -0.122 7.122 21 C -0.138 4.138 22 C -0.191 4.191 23 C 0.273 3.727 24 C -0.258 4.258 25 O -0.321 6.321 26 C 0.113 3.887 27 O -0.280 6.280 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.888 -10.315 -9.450 14.819 hybrid contribution 1.143 -0.528 0.099 1.263 sum -3.745 -10.843 -9.351 14.800 Atomic orbital electron populations 1.23137 0.77630 1.02888 1.02185 1.86553 1.22587 1.34762 1.84580 1.24297 0.92645 0.80723 0.71173 1.90605 1.67437 1.36293 1.45714 1.22279 0.84967 1.04945 1.04688 1.20642 0.84790 0.89770 1.00851 1.43679 0.99647 1.82603 1.02254 1.18992 1.06619 1.14442 1.00371 0.91920 1.25131 1.01056 0.93371 0.98072 1.70294 1.26806 1.06191 1.46829 0.86645 0.83532 0.78708 0.80219 1.20881 1.21576 1.19859 1.19827 1.00875 0.88011 0.84860 1.21593 0.90419 1.01929 0.95440 1.21285 0.99411 0.92614 0.97793 1.17586 0.83132 0.92508 1.01298 1.91481 1.47548 1.78149 1.94979 1.21098 0.91907 1.00666 1.00140 1.20668 0.96324 0.98138 1.03930 1.22172 0.85394 0.86902 0.78202 1.22235 1.04623 0.96923 1.02020 1.90572 1.28386 1.57732 1.55399 1.18601 0.85712 0.90082 0.94261 1.84811 1.33941 1.59246 1.49957 0.92309 0.92217 0.88821 0.88409 0.88802 0.92837 0.92475 0.93274 0.93417 0.89202 0.84022 0.84234 0.89943 0.88960 0.89038 0.75419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.19 10.56 -39.25 -0.41 -6.60 16 3 C 0.47 8.86 7.96 36.01 0.29 9.14 16 4 O -0.51 -10.70 15.66 -18.75 -0.29 -10.99 16 5 C -0.13 -2.46 5.97 -27.88 -0.17 -2.63 16 6 C 0.17 3.54 4.76 -4.04 -0.02 3.52 16 7 N -0.56 -12.83 2.41 -174.61 -0.42 -13.25 16 8 C -0.28 -6.90 9.34 -15.06 -0.14 -7.04 16 9 H 0.06 1.60 7.98 -52.48 -0.42 1.18 16 10 C 0.03 0.69 4.64 -17.43 -0.08 0.61 16 11 N -0.86 -22.95 12.26 55.49 0.68 -22.27 16 12 Si 0.88 19.89 29.65 -169.99 -5.04 14.85 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 C 0.19 3.93 5.18 -5.19 -0.03 3.91 16 17 C -0.09 -1.58 5.27 -104.53 -0.55 -2.13 16 18 C -0.09 -1.56 9.65 -39.44 -0.38 -1.94 16 19 C 0.07 1.12 7.28 -39.50 -0.29 0.83 16 20 F -0.14 -2.17 17.26 2.25 0.04 -2.13 16 21 C -0.12 -1.54 9.42 -39.04 -0.37 -1.90 16 22 C -0.19 -2.67 5.88 -104.95 -0.62 -3.29 16 23 C 0.40 5.18 7.22 -30.85 -0.22 4.95 16 24 C -0.20 -1.75 10.19 36.01 0.37 -1.38 16 25 O -0.45 -7.18 15.90 -16.38 -0.26 -7.44 16 26 C 0.16 2.58 5.04 -38.60 -0.19 2.38 16 27 O -0.47 -7.54 9.24 -40.55 -0.37 -7.91 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.06 0.77 8.13 -51.92 -0.42 0.35 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.90 5.52 -51.92 -0.29 1.62 16 32 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.06 1.23 7.20 -51.93 -0.37 0.85 16 35 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 36 H 0.05 0.95 7.40 -51.93 -0.38 0.57 16 37 H 0.09 2.06 5.99 -51.93 -0.31 1.74 16 38 H 0.14 2.57 8.06 -52.48 -0.42 2.15 16 39 H 0.14 1.35 5.92 -52.49 -0.31 1.04 16 40 H 0.08 0.58 5.60 -51.93 -0.29 0.28 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.39 4.82 9.06 45.56 0.41 5.24 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -30.46 370.59 -6.31 -36.78 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.48 Total: 6.82 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.34 Total: 6.56 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.26 Total: -35.52 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.34 Total: -32.94 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.04 Total: 14.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.46 -6.31 -36.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.613 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds