Wall clock time and date at job start Tue Mar 31 2020 22:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00033 * 2 1 4 4 O 1.20823 * 120.00458 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99803 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47121 * 179.97438 * 5 3 2 7 7 N 1.46508 * 109.46899 * 185.33176 * 6 5 3 8 8 C 1.36935 * 119.99685 * 277.56143 * 7 6 5 9 9 H 1.08005 * 120.00239 * 39.40184 * 8 7 6 10 10 C 1.38811 * 120.00106 * 219.40347 * 8 7 6 11 11 N 1.31618 * 120.00109 * 29.42483 * 10 8 7 12 12 Si 1.86805 * 119.99853 * 209.43266 * 10 8 7 13 13 H 1.48504 * 109.47178 * 89.99870 * 12 10 8 14 14 H 1.48501 * 109.46948 * 209.99370 * 12 10 8 15 15 H 1.48497 * 109.47006 * 329.99428 * 12 10 8 16 16 C 1.46496 * 120.00099 * 97.56913 * 7 6 5 17 17 C 1.50704 * 109.46738 * 275.37224 * 16 7 6 18 18 C 1.38091 * 119.93143 * 267.94238 * 17 16 7 19 19 C 1.38771 * 120.43214 * 180.02562 * 18 17 16 20 20 F 1.35097 * 119.85603 * 179.97438 * 19 18 17 21 21 C 1.37910 * 120.28540 * 359.97438 * 19 18 17 22 22 C 1.39992 * 119.85361 * 359.97438 * 21 19 18 23 23 C 1.46796 * 120.21103 * 180.02562 * 22 21 19 24 24 C 1.50699 * 119.99534 * 0.02562 * 23 22 21 25 25 O 1.21292 * 120.00074 * 179.97438 * 23 22 21 26 26 C 1.38634 * 119.93167 * 87.67737 * 17 16 7 27 27 O 1.35642 * 120.14388 * 359.97291 * 26 17 16 28 28 H 1.09003 * 109.47272 * 300.00796 * 1 2 3 29 29 H 1.09008 * 109.46977 * 60.00303 * 1 2 3 30 30 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47307 * 59.99718 * 5 3 2 32 32 H 1.08998 * 109.47215 * 299.99867 * 5 3 2 33 33 H 1.08991 * 109.46847 * 65.32955 * 6 5 3 34 34 H 1.08996 * 109.46801 * 305.32923 * 6 5 3 35 35 H 0.96997 * 120.00327 * 184.30885 * 11 10 8 36 36 H 1.08999 * 109.47430 * 35.37015 * 16 7 6 37 37 H 1.08993 * 109.47314 * 155.37846 * 16 7 6 38 38 H 1.08003 * 119.78546 * 0.02562 * 18 17 16 39 39 H 1.07999 * 120.07262 * 179.97438 * 21 19 18 40 40 H 1.08998 * 109.47651 * 359.97438 * 24 23 22 41 41 H 1.08996 * 109.47009 * 120.00488 * 24 23 22 42 42 H 1.09002 * 109.46554 * 239.99782 * 24 23 22 43 43 H 0.96702 * 114.00232 * 94.86938 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4576 2.8202 -0.1280 8 6 6.2508 2.6707 0.9782 9 1 5.9982 1.9362 1.7286 10 6 7.3796 3.4632 1.1350 11 7 7.4106 4.6738 0.6194 12 14 8.8547 2.8115 2.0778 13 1 9.7752 2.1196 1.1402 14 1 9.5666 3.9420 2.7262 15 1 8.3950 1.8550 3.1165 16 6 6.0662 3.0584 -1.4391 17 6 6.2088 1.7493 -2.1719 18 6 7.3779 1.0225 -2.0631 19 6 7.5206 -0.1839 -2.7338 20 9 8.6697 -0.8851 -2.6196 21 6 6.4945 -0.6701 -3.5166 22 6 5.3036 0.0564 -3.6345 23 6 4.2062 -0.4541 -4.4651 24 6 4.3593 -1.7643 -5.1937 25 8 3.1759 0.1783 -4.5642 26 6 5.1639 1.2745 -2.9496 27 8 4.0132 1.9854 -3.0518 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.9564 0.7804 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 3.6915 3.2126 0.9332 34 1 3.5337 3.2583 -0.8391 35 1 8.2210 5.2039 0.6746 36 1 5.4326 3.7312 -2.0170 37 1 7.0495 3.5095 -1.3066 38 1 8.1866 1.3955 -1.4520 39 1 6.6094 -1.6092 -4.0374 40 1 5.3437 -2.1832 -4.9852 41 1 3.5897 -2.4591 -4.8574 42 1 4.2552 -1.5980 -6.2659 43 1 3.9766 2.5655 -3.8246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879473585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:15 Heat of formation + Delta-G solvation = -179.539892 kcal Electronic energy + Delta-G solvation = -30884.210945 eV Core-core repulsion = 26423.762669 eV Total energy + Delta-G solvation = -4460.448276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.87502 -41.55199 -41.31432 -39.52464 -37.85498 -37.49938 -37.20896 -33.99826 -33.67212 -31.83276 -30.63639 -30.04081 -28.59679 -27.52412 -26.02959 -24.90214 -23.38839 -22.49676 -21.51345 -20.63834 -19.39571 -18.89178 -18.60949 -18.04917 -17.89892 -17.54570 -17.46340 -16.81823 -16.63294 -16.36942 -16.31431 -15.79384 -15.72227 -15.51856 -15.33861 -14.91639 -14.73505 -14.57702 -14.31297 -13.92733 -13.71222 -13.45973 -13.31416 -13.02418 -13.00062 -12.79153 -12.75923 -12.67429 -12.55499 -12.44187 -12.21204 -11.93650 -11.82270 -11.78179 -11.64998 -11.51441 -10.58399 -10.50682 -10.02641 -9.44321 -8.73492 -7.93376 -5.51516 -0.48312 0.09490 1.21284 1.37302 1.45036 1.50111 1.56673 1.81165 2.44728 2.53404 2.96119 3.13857 3.19975 3.29926 3.67986 3.70440 3.92253 4.01584 4.20483 4.20824 4.22884 4.30805 4.32391 4.39249 4.45260 4.65663 4.69214 4.70617 4.73579 4.75161 4.83747 5.00031 5.03281 5.05842 5.22718 5.28119 5.33340 5.43565 5.53589 5.69362 5.73016 6.39021 6.58048 6.76100 6.79455 7.08064 7.71497 8.31877 9.03059 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008088 B = 0.005918 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.084015 B = 4730.028490 C = 7106.792844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.114 4.114 6 C 0.174 3.826 7 N -0.578 5.578 8 C -0.280 4.280 9 H 0.055 0.945 10 C -0.011 4.011 11 N -0.899 5.899 12 Si 0.937 3.063 13 H -0.277 1.277 14 H -0.296 1.296 15 H -0.271 1.271 16 C 0.201 3.799 17 C -0.103 4.103 18 C -0.101 4.101 19 C 0.070 3.930 20 F -0.141 7.141 21 C -0.086 4.086 22 C -0.190 4.190 23 C 0.397 3.603 24 C -0.194 4.194 25 O -0.481 6.481 26 C 0.158 3.842 27 O -0.483 6.483 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.134 0.866 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.255 0.745 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.186 0.814 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -14.438 -11.679 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.154 4.154 6 C 0.048 3.952 7 N -0.296 5.296 8 C -0.410 4.410 9 H 0.073 0.927 10 C -0.212 4.212 11 N -0.540 5.540 12 Si 0.764 3.236 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.195 1.195 16 C 0.075 3.925 17 C -0.107 4.107 18 C -0.121 4.121 19 C 0.050 3.950 20 F -0.120 7.120 21 C -0.105 4.105 22 C -0.191 4.191 23 C 0.277 3.723 24 C -0.250 4.250 25 O -0.358 6.358 26 C 0.112 3.888 27 O -0.295 6.295 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.203 0.797 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.231 -13.915 -11.131 18.572 hybrid contribution 1.144 0.516 0.505 1.352 sum -4.088 -13.399 -10.626 17.583 Atomic orbital electron populations 1.23525 0.75080 1.05615 1.02314 1.86514 1.25006 1.33124 1.83929 1.24074 0.92415 0.81068 0.70662 1.90596 1.67896 1.37254 1.47003 1.21968 0.85703 1.02997 1.04780 1.20458 0.84408 0.91193 0.99133 1.43772 0.99886 1.83276 1.02714 1.19106 1.06923 1.13731 1.01193 0.92716 1.25689 1.02924 0.93361 0.99178 1.70365 1.27141 1.07277 1.49172 0.85773 0.80866 0.77805 0.79146 1.20303 1.22224 1.19525 1.19535 0.98968 0.89673 0.84345 1.21112 0.91781 1.00539 0.97237 1.21187 0.98749 0.93840 0.98299 1.17549 0.83879 0.91887 1.01651 1.91490 1.47587 1.77872 1.95018 1.21496 0.89909 1.01269 0.97779 1.20959 0.97440 0.97228 1.03507 1.22747 0.84019 0.88108 0.77426 1.22273 1.06385 0.93977 1.02361 1.90576 1.29532 1.59144 1.56557 1.18648 0.85014 0.90956 0.94216 1.84768 1.33957 1.59750 1.51066 0.91945 0.92424 0.84813 0.88296 0.88570 0.95355 0.93163 0.93569 0.93735 0.91951 0.85928 0.79709 0.87613 0.87774 0.87194 0.73914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.37 -11.84 10.56 -51.37 -0.54 -12.38 16 3 C 0.47 17.80 7.96 71.24 0.57 18.37 16 4 O -0.54 -22.62 15.66 21.97 0.34 -22.28 16 5 C -0.11 -4.43 5.97 29.85 0.18 -4.25 16 6 C 0.17 7.76 4.76 86.38 0.41 8.17 16 7 N -0.58 -27.39 2.41 -706.35 -1.70 -29.09 16 8 C -0.28 -14.53 9.34 84.03 0.78 -13.74 16 9 H 0.06 2.88 7.98 -2.91 -0.02 2.85 16 10 C -0.01 -0.58 4.64 84.86 0.39 -0.19 16 11 N -0.90 -49.90 12.26 21.65 0.27 -49.63 16 12 Si 0.94 41.99 29.65 68.60 2.03 44.02 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 C 0.20 8.69 5.18 85.64 0.44 9.14 16 17 C -0.10 -3.70 5.27 -19.80 -0.10 -3.80 16 18 C -0.10 -3.46 9.65 22.36 0.22 -3.24 16 19 C 0.07 1.95 7.28 22.32 0.16 2.11 16 20 F -0.14 -3.93 17.26 44.97 0.78 -3.15 16 21 C -0.09 -1.87 9.42 22.62 0.21 -1.66 16 22 C -0.19 -4.83 5.88 -20.08 -0.12 -4.95 16 23 C 0.40 9.05 7.22 27.93 0.20 9.25 16 24 C -0.19 -2.35 10.19 71.24 0.73 -1.62 16 25 O -0.48 -14.48 15.90 17.89 0.28 -14.20 16 26 C 0.16 4.98 5.04 22.90 0.12 5.09 16 27 O -0.48 -15.53 9.24 -68.60 -0.63 -16.16 16 28 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 30 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 3.83 5.52 -2.38 -0.01 3.82 16 32 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.03 1.37 8.10 -2.39 -0.02 1.35 16 34 H 0.05 2.26 7.20 -2.39 -0.02 2.25 16 35 H 0.26 13.63 8.32 -92.71 -0.77 12.86 16 36 H 0.04 1.88 7.40 -2.39 -0.02 1.87 16 37 H 0.06 3.04 5.99 -2.39 -0.01 3.02 16 38 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.19 2.37 5.92 -2.91 -0.02 2.35 16 40 H 0.11 0.77 5.60 -2.39 -0.01 0.76 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.40 10.08 9.06 -74.06 -0.67 9.41 16 Total: -1.00 -68.51 370.59 6.61 -61.89 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.40 Total: 20.46 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 5.39 Total: 20.52 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -1.44 Total: -78.73 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -0.55 Total: -65.02 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -68.51 6.61 -61.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.646 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds