Wall clock time and date at job start Tue Mar 31 2020 22:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46644 * 2 1 4 4 N 1.46898 * 109.47553 * 120.00281 * 2 1 3 5 5 C 1.46897 * 110.99600 * 275.00205 * 4 2 1 6 6 H 1.08996 * 112.85342 * 336.19002 * 5 4 2 7 7 C 1.53779 * 113.61407 * 107.50537 * 5 4 2 8 8 C 1.53775 * 87.08415 * 89.11033 * 7 5 4 9 9 H 1.09001 * 113.69188 * 270.87389 * 8 7 5 10 10 S 1.81402 * 113.61605 * 139.97883 * 8 7 5 11 11 C 1.81400 * 101.91943 * 82.50319 * 10 8 7 12 12 O 1.42101 * 108.58055 * 196.99214 * 10 8 7 13 13 O 1.42099 * 108.57893 * 328.02114 * 10 8 7 14 14 C 1.53777 * 87.08066 * 25.43432 * 8 7 5 15 15 C 1.50699 * 109.46910 * 240.00639 * 2 1 3 16 16 C 1.38305 * 119.93408 * 99.99621 * 15 2 1 17 17 C 1.38101 * 120.07071 * 179.97438 * 16 15 2 18 18 C 1.38876 * 119.92956 * 0.02562 * 17 16 15 19 19 O 1.35750 * 120.06861 * 180.02562 * 18 17 16 20 20 C 1.34828 * 117.00075 * 5.53840 * 19 18 17 21 21 H 1.08003 * 120.00029 * 354.94359 * 20 19 18 22 22 C 1.38659 * 120.00122 * 174.94542 * 20 19 18 23 23 N 1.31558 * 119.99705 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00035 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47181 * 89.99980 * 24 22 20 26 26 H 1.48498 * 109.47260 * 210.00361 * 24 22 20 27 27 H 1.48502 * 109.47130 * 330.00179 * 24 22 20 28 28 C 1.38880 * 119.86555 * 0.27954 * 18 17 16 29 29 C 1.38102 * 119.92551 * 359.44514 * 28 18 17 30 30 H 1.08991 * 109.47399 * 59.99770 * 1 2 3 31 31 H 1.09004 * 109.46644 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46910 * 299.99112 * 1 2 3 33 33 H 1.00891 * 110.99831 * 151.04583 * 4 2 1 34 34 H 1.09008 * 113.61523 * 203.65962 * 7 5 4 35 35 H 1.08996 * 113.61471 * 334.55951 * 7 5 4 36 36 H 1.08997 * 109.47014 * 60.00338 * 11 10 8 37 37 H 1.09006 * 109.47255 * 180.02562 * 11 10 8 38 38 H 1.08994 * 109.47588 * 300.00222 * 11 10 8 39 39 H 1.09004 * 113.61458 * 220.01554 * 14 8 7 40 40 H 1.08999 * 113.69607 * 89.12985 * 14 8 7 41 41 H 1.07999 * 119.96326 * 0.02562 * 16 15 2 42 42 H 1.07997 * 120.03156 * 180.02562 * 17 16 15 43 43 H 0.96997 * 119.99350 * 179.97438 * 23 22 20 44 44 H 1.07996 * 120.04097 * 179.72435 * 28 18 17 45 45 H 1.07997 * 119.96688 * 180.27743 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0826 0.2226 2.3468 6 1 2.1684 1.2679 2.0503 7 6 0.9912 -0.0337 3.3994 8 6 1.9710 -1.0166 4.0617 9 1 1.8948 -2.0348 3.6801 10 16 1.9623 -0.9411 5.8741 11 6 0.5380 -1.9863 6.2858 12 8 3.1407 -1.5700 6.3591 13 8 1.6745 0.3928 6.2703 14 6 3.1032 -0.2001 3.4166 15 6 2.0323 -0.7103 -1.2305 16 6 2.4585 0.0214 -2.3241 17 6 2.9198 -0.6266 -3.4530 18 6 2.9550 -2.0144 -3.4897 19 8 3.4084 -2.6543 -4.5977 20 6 3.9167 -1.8868 -5.5829 21 1 3.8751 -0.8104 -5.5048 22 6 4.4928 -2.4794 -6.6962 23 7 4.9891 -1.7304 -7.6572 24 14 4.5653 -4.3410 -6.8310 25 1 3.3406 -4.8363 -7.5093 26 1 5.7610 -4.7341 -7.6190 27 1 4.6520 -4.9327 -5.4717 28 6 2.5205 -2.7465 -2.3924 29 6 2.0656 -2.0925 -1.2643 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.9174 -1.1204 1.0286 34 1 0.7643 0.8374 4.0142 35 1 0.0989 -0.5121 2.9957 36 1 0.7024 -2.9926 5.9005 37 1 0.4178 -2.0266 7.3685 38 1 -0.3621 -1.5675 5.8360 39 1 3.9161 -0.8129 3.0267 40 1 3.4550 0.6257 4.0350 41 1 2.4313 1.1006 -2.2948 42 1 3.2528 -0.0546 -4.3064 43 1 5.3924 -2.1450 -8.4358 44 1 2.5424 -3.8259 -2.4195 45 1 1.7317 -2.6611 -0.4089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883374913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:04 Heat of formation + Delta-G solvation = -43.364731 kcal Electronic energy + Delta-G solvation = -26558.721201 eV Core-core repulsion = 22670.391099 eV Total energy + Delta-G solvation = -3888.330102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -39.88128 -39.14767 -37.36434 -37.18351 -36.34144 -34.65584 -32.41573 -30.46986 -30.13066 -29.80245 -28.23571 -26.19112 -25.55120 -25.22100 -22.44139 -22.16380 -20.08477 -19.88151 -19.02171 -17.91697 -17.65209 -17.30776 -16.53535 -16.35660 -15.96021 -15.59240 -14.96064 -14.67105 -14.52386 -13.97542 -13.90394 -13.73033 -13.67277 -13.59907 -13.14550 -12.97207 -12.92812 -12.73903 -12.67333 -12.39915 -12.32374 -12.30055 -12.26972 -11.98971 -11.63425 -11.41738 -11.34033 -11.18848 -10.93730 -10.79544 -10.71835 -10.58101 -10.23924 -10.13215 -9.45103 -8.91800 -8.61296 -8.32702 -7.38962 -6.46985 -4.13897 -0.33932 2.06237 2.11798 2.36311 3.18900 3.20487 3.21657 3.36010 3.49775 3.76691 3.96204 4.10094 4.18899 4.26908 4.39141 4.40476 4.54830 4.67477 4.79353 5.01352 5.06563 5.14817 5.15872 5.23712 5.29700 5.35200 5.47224 5.56018 5.56182 5.61393 5.66894 5.73782 5.90266 5.92651 6.07724 6.24273 6.33300 6.51056 6.69906 6.87172 6.96009 7.20940 7.22553 7.34386 7.55080 7.73954 7.98052 8.88039 9.49961 10.60500 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.001995 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.502336 B =14031.970136 C =14480.308685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.142 3.858 3 H 0.046 0.954 4 N -0.666 5.666 5 C 0.076 3.924 6 H 0.070 0.930 7 C -0.108 4.108 8 C -0.586 4.586 9 H 0.156 0.844 10 S 2.416 3.584 11 C -0.655 4.655 12 O -0.944 6.944 13 O -0.941 6.941 14 C -0.115 4.115 15 C -0.187 4.187 16 C -0.065 4.065 17 C -0.222 4.222 18 C 0.161 3.839 19 O -0.216 6.216 20 C -0.390 4.390 21 H 0.106 0.894 22 C 0.063 3.937 23 N -0.878 5.878 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.195 4.195 29 C -0.058 4.058 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.351 0.649 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.132 0.868 43 H 0.280 0.720 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 1.986 24.194 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.033 3.967 3 H 0.064 0.936 4 N -0.299 5.299 5 C -0.036 4.036 6 H 0.087 0.913 7 C -0.147 4.147 8 C -0.697 4.697 9 H 0.174 0.826 10 S 2.600 3.400 11 C -0.804 4.804 12 O -0.941 6.941 13 O -0.939 6.939 14 C -0.154 4.154 15 C -0.188 4.188 16 C -0.084 4.084 17 C -0.241 4.241 18 C 0.109 3.891 19 O -0.121 6.121 20 C -0.466 4.466 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.516 5.516 24 Si 0.732 3.268 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.214 4.214 29 C -0.077 4.077 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.172 0.828 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.150 0.850 43 H 0.090 0.910 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.416 1.936 24.665 26.471 hybrid contribution 0.314 -0.688 -1.050 1.294 sum -9.102 1.248 23.615 25.339 Atomic orbital electron populations 1.21796 0.94374 1.02245 1.00676 1.20266 0.95307 0.94606 0.86506 0.93615 1.60438 1.33735 1.31849 1.03876 1.22475 0.94964 0.95627 0.90530 0.91265 1.22884 0.97354 0.97197 0.97308 1.31566 1.07195 1.08756 1.22143 0.82600 1.07949 0.77113 0.76286 0.78679 1.30223 1.21299 1.16756 1.12110 1.93592 1.44375 1.77685 1.78481 1.93586 1.85478 1.34198 1.80592 1.22921 0.95476 0.98845 0.98141 1.19322 1.09591 0.93796 0.96136 1.20640 0.96720 0.98407 0.92654 1.21243 1.08326 0.94359 1.00147 1.19171 0.92305 0.90956 0.86679 1.83572 1.68886 1.36474 1.23197 1.20766 1.37497 0.92080 0.96243 0.87633 1.24484 0.94964 1.00308 0.94281 1.69646 1.37214 1.36216 1.08505 0.86167 0.77873 0.83565 0.79219 1.19861 1.20779 1.18346 1.20246 1.08884 0.99328 0.92949 1.20476 0.97319 0.93377 0.96502 0.92594 0.92058 0.93253 0.82811 0.88027 0.88871 0.85348 0.85619 0.85258 0.89077 0.88577 0.87473 0.84991 0.90996 0.86605 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.39 37.16 0.35 -1.04 16 2 C 0.14 1.60 2.81 -68.86 -0.19 1.41 16 3 H 0.05 0.51 7.32 -51.93 -0.38 0.13 16 4 N -0.67 -6.32 5.64 -100.10 -0.56 -6.89 16 5 C 0.08 0.60 4.04 -66.90 -0.27 0.33 16 6 H 0.07 0.56 7.47 -51.93 -0.39 0.17 16 7 C -0.11 -0.69 7.42 -25.92 -0.19 -0.88 16 8 C -0.59 -3.49 4.08 -25.92 -0.11 -3.59 16 9 H 0.16 0.72 8.14 -51.93 -0.42 0.30 16 10 S 2.42 16.48 5.34 -107.50 -0.57 15.91 16 11 C -0.65 -2.42 10.62 101.05 1.07 -1.34 16 12 O -0.94 -10.29 18.10 -57.83 -1.05 -11.33 16 13 O -0.94 -9.43 17.19 -57.83 -0.99 -10.42 16 14 C -0.11 -0.83 7.34 -25.92 -0.19 -1.02 16 15 C -0.19 -2.76 4.72 -104.57 -0.49 -3.25 16 16 C -0.07 -1.10 9.66 -39.61 -0.38 -1.48 16 17 C -0.22 -4.56 9.17 -39.40 -0.36 -4.92 16 18 C 0.16 3.58 6.65 -39.11 -0.26 3.32 16 19 O -0.22 -5.58 8.59 0.05 0.00 -5.58 16 20 C -0.39 -10.79 9.95 30.89 0.31 -10.48 16 21 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 22 C 0.06 1.74 5.49 -17.51 -0.10 1.65 16 23 N -0.88 -25.01 13.96 55.48 0.77 -24.23 16 24 Si 0.91 21.33 28.62 -169.99 -4.86 16.47 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 28 C -0.19 -3.65 9.99 -39.39 -0.39 -4.04 16 29 C -0.06 -0.90 9.00 -39.61 -0.36 -1.26 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.44 8.02 -51.93 -0.42 0.02 16 33 H 0.35 3.51 7.64 -39.30 -0.30 3.21 16 34 H 0.10 0.60 7.36 -51.92 -0.38 0.21 16 35 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.13 0.41 8.14 -51.92 -0.42 -0.02 16 38 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 40 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.11 1.56 8.03 -52.49 -0.42 1.14 16 42 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 43 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 45 H 0.12 1.58 7.71 -52.49 -0.40 1.17 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -33.83 383.05 -9.68 -43.52 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.62 Total: 3.38 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -1.57 Total: -26.60 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.21 Total: -31.12 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -2.04 Total: -27.33 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.86 Total: 16.47 kcal Atomic # 16 Polarization: 16.48 SS G_CDS: -0.57 Total: 15.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.83 -9.68 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883374913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.152 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds