Wall clock time and date at job start Tue Mar 31 2020 22:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46644 * 2 1 4 4 N 1.46898 * 109.47553 * 120.00281 * 2 1 3 5 5 C 1.46897 * 110.99600 * 275.00205 * 4 2 1 6 6 H 1.08996 * 112.85342 * 336.19002 * 5 4 2 7 7 C 1.53779 * 113.61407 * 107.50537 * 5 4 2 8 8 C 1.53775 * 87.08415 * 89.11033 * 7 5 4 9 9 H 1.09001 * 113.69188 * 270.87389 * 8 7 5 10 10 S 1.81402 * 113.61605 * 139.97883 * 8 7 5 11 11 C 1.81400 * 101.91943 * 82.50319 * 10 8 7 12 12 O 1.42101 * 108.58055 * 196.99214 * 10 8 7 13 13 O 1.42099 * 108.57893 * 328.02114 * 10 8 7 14 14 C 1.53777 * 87.08066 * 25.43432 * 8 7 5 15 15 C 1.50699 * 109.46910 * 240.00639 * 2 1 3 16 16 C 1.38305 * 119.93408 * 99.99621 * 15 2 1 17 17 C 1.38101 * 120.07071 * 179.97438 * 16 15 2 18 18 C 1.38876 * 119.92956 * 0.02562 * 17 16 15 19 19 O 1.35750 * 120.06861 * 180.02562 * 18 17 16 20 20 C 1.34828 * 117.00075 * 5.53840 * 19 18 17 21 21 H 1.08003 * 120.00029 * 354.94359 * 20 19 18 22 22 C 1.38659 * 120.00122 * 174.94542 * 20 19 18 23 23 N 1.31558 * 119.99705 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00035 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47181 * 89.99980 * 24 22 20 26 26 H 1.48498 * 109.47260 * 210.00361 * 24 22 20 27 27 H 1.48502 * 109.47130 * 330.00179 * 24 22 20 28 28 C 1.38880 * 119.86555 * 0.27954 * 18 17 16 29 29 C 1.38102 * 119.92551 * 359.44514 * 28 18 17 30 30 H 1.08991 * 109.47399 * 59.99770 * 1 2 3 31 31 H 1.09004 * 109.46644 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46910 * 299.99112 * 1 2 3 33 33 H 1.00891 * 110.99831 * 151.04583 * 4 2 1 34 34 H 1.09008 * 113.61523 * 203.65962 * 7 5 4 35 35 H 1.08996 * 113.61471 * 334.55951 * 7 5 4 36 36 H 1.08997 * 109.47014 * 60.00338 * 11 10 8 37 37 H 1.09006 * 109.47255 * 180.02562 * 11 10 8 38 38 H 1.08994 * 109.47588 * 300.00222 * 11 10 8 39 39 H 1.09004 * 113.61458 * 220.01554 * 14 8 7 40 40 H 1.08999 * 113.69607 * 89.12985 * 14 8 7 41 41 H 1.07999 * 119.96326 * 0.02562 * 16 15 2 42 42 H 1.07997 * 120.03156 * 180.02562 * 17 16 15 43 43 H 0.96997 * 119.99350 * 179.97438 * 23 22 20 44 44 H 1.07996 * 120.04097 * 179.72435 * 28 18 17 45 45 H 1.07997 * 119.96688 * 180.27743 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 2.0826 0.2226 2.3468 6 1 2.1684 1.2679 2.0503 7 6 0.9912 -0.0337 3.3994 8 6 1.9710 -1.0166 4.0617 9 1 1.8948 -2.0348 3.6801 10 16 1.9623 -0.9411 5.8741 11 6 0.5380 -1.9863 6.2858 12 8 3.1407 -1.5700 6.3591 13 8 1.6745 0.3928 6.2703 14 6 3.1032 -0.2001 3.4166 15 6 2.0323 -0.7103 -1.2305 16 6 2.4585 0.0214 -2.3241 17 6 2.9198 -0.6266 -3.4530 18 6 2.9550 -2.0144 -3.4897 19 8 3.4084 -2.6543 -4.5977 20 6 3.9167 -1.8868 -5.5829 21 1 3.8751 -0.8104 -5.5048 22 6 4.4928 -2.4794 -6.6962 23 7 4.9891 -1.7304 -7.6572 24 14 4.5653 -4.3410 -6.8310 25 1 3.3406 -4.8363 -7.5093 26 1 5.7610 -4.7341 -7.6190 27 1 4.6520 -4.9327 -5.4717 28 6 2.5205 -2.7465 -2.3924 29 6 2.0656 -2.0925 -1.2643 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.9174 -1.1204 1.0286 34 1 0.7643 0.8374 4.0142 35 1 0.0989 -0.5121 2.9957 36 1 0.7024 -2.9926 5.9005 37 1 0.4178 -2.0266 7.3685 38 1 -0.3621 -1.5675 5.8360 39 1 3.9161 -0.8129 3.0267 40 1 3.4550 0.6257 4.0350 41 1 2.4313 1.1006 -2.2948 42 1 3.2528 -0.0546 -4.3064 43 1 5.3924 -2.1450 -8.4358 44 1 2.5424 -3.8259 -2.4195 45 1 1.7317 -2.6611 -0.4089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883374913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:04 Heat of formation + Delta-G solvation = -67.783847 kcal Electronic energy + Delta-G solvation = -26559.780093 eV Core-core repulsion = 22670.391099 eV Total energy + Delta-G solvation = -3889.388994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04031 -40.24171 -38.69135 -37.92873 -36.98675 -35.76109 -34.40418 -31.88261 -31.04236 -30.29180 -29.45184 -27.28456 -26.67818 -26.02522 -23.78419 -23.54845 -21.36499 -20.51717 -19.78437 -19.50826 -19.11277 -18.17459 -17.11812 -17.05767 -16.77610 -16.72318 -16.17337 -15.96967 -15.71834 -15.42421 -15.25091 -15.07671 -14.43614 -14.18543 -14.04275 -13.94482 -13.91146 -13.86049 -13.74981 -13.46720 -13.32701 -13.08297 -13.04253 -12.97160 -12.87908 -12.56143 -12.37691 -12.30874 -12.02195 -11.92109 -11.78915 -11.61554 -11.45569 -11.26867 -10.90855 -10.78267 -9.79104 -9.37876 -8.98645 -8.50701 -6.23261 -0.82827 0.57935 0.63776 1.31302 1.35585 1.51288 1.91524 2.27345 2.71396 2.74980 2.98416 3.03222 3.11344 3.19208 3.44262 3.57110 3.66673 3.95827 4.07792 4.11777 4.16373 4.21680 4.31705 4.44763 4.56730 4.60114 4.63943 4.67159 4.76032 4.79646 4.94386 4.97348 5.02080 5.06401 5.09130 5.16344 5.21678 5.29905 5.39517 5.50384 5.57858 5.71881 5.79986 5.91454 6.21385 6.26522 6.46625 6.83747 7.58778 8.60876 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.001995 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.502336 B =14031.970136 C =14480.308685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.145 3.855 3 H 0.053 0.947 4 N -0.660 5.660 5 C 0.069 3.931 6 H 0.070 0.930 7 C -0.103 4.103 8 C -0.572 4.572 9 H 0.176 0.824 10 S 2.416 3.584 11 C -0.639 4.639 12 O -0.994 6.994 13 O -0.981 6.981 14 C -0.126 4.126 15 C -0.156 4.156 16 C -0.069 4.069 17 C -0.238 4.238 18 C 0.119 3.881 19 O -0.246 6.246 20 C -0.398 4.398 21 H 0.080 0.920 22 C 0.008 3.992 23 N -0.924 5.924 24 Si 0.972 3.028 25 H -0.266 1.266 26 H -0.269 1.269 27 H -0.262 1.262 28 C -0.193 4.193 29 C -0.046 4.046 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.349 0.651 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.284 0.716 44 H 0.126 0.874 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 0.793 27.218 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.036 3.964 3 H 0.071 0.929 4 N -0.292 5.292 5 C -0.042 4.042 6 H 0.088 0.912 7 C -0.142 4.142 8 C -0.683 4.683 9 H 0.193 0.807 10 S 2.605 3.395 11 C -0.791 4.791 12 O -0.991 6.991 13 O -0.978 6.978 14 C -0.165 4.165 15 C -0.157 4.157 16 C -0.087 4.087 17 C -0.258 4.258 18 C 0.070 3.930 19 O -0.154 6.154 20 C -0.474 4.474 21 H 0.097 0.903 22 C -0.190 4.190 23 N -0.565 5.565 24 Si 0.794 3.206 25 H -0.191 1.191 26 H -0.193 1.193 27 H -0.186 1.186 28 C -0.212 4.212 29 C -0.064 4.064 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.168 0.832 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.149 0.851 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.144 0.856 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.738 0.786 27.746 30.136 hybrid contribution 0.859 -0.155 -1.641 1.859 sum -10.879 0.631 26.105 28.288 Atomic orbital electron populations 1.21770 0.93042 1.02483 1.01547 1.20282 0.96199 0.94536 0.85421 0.92939 1.60461 1.33647 1.31813 1.03324 1.22537 0.96161 0.95311 0.90205 0.91226 1.22907 0.97342 0.97507 0.96468 1.31486 1.06402 1.09692 1.20727 0.80662 1.07610 0.77331 0.75677 0.78847 1.30066 1.19345 1.16704 1.13015 1.93532 1.47695 1.78232 1.79641 1.93533 1.86073 1.36744 1.81474 1.23012 0.95925 0.99322 0.98273 1.19810 1.05533 0.93816 0.96494 1.20915 0.96064 0.99850 0.91901 1.21237 1.09542 0.94098 1.00887 1.19728 0.94106 0.92015 0.87153 1.83513 1.71318 1.36393 1.24148 1.20690 1.37962 0.91393 0.97402 0.90264 1.25307 0.94849 1.04963 0.93925 1.69733 1.39255 1.38029 1.09457 0.85193 0.78476 0.77900 0.79005 1.19070 1.19347 1.18607 1.20567 1.07961 1.00047 0.92612 1.20861 0.95551 0.93811 0.96195 0.93251 0.92110 0.91036 0.83038 0.87622 0.87492 0.83246 0.84917 0.82929 0.89052 0.88614 0.85096 0.87767 0.90605 0.85554 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.39 71.98 0.68 -1.46 16 2 C 0.14 2.67 2.81 44.17 0.12 2.79 16 3 H 0.05 0.96 7.32 -2.38 -0.02 0.94 16 4 N -0.66 -9.66 5.64 -470.61 -2.65 -12.31 16 5 C 0.07 0.84 4.04 45.44 0.18 1.03 16 6 H 0.07 0.88 7.47 -2.39 -0.02 0.87 16 7 C -0.10 -0.89 7.42 31.12 0.23 -0.66 16 8 C -0.57 -4.91 4.08 31.12 0.13 -4.79 16 9 H 0.18 0.84 8.14 -2.39 -0.02 0.82 16 10 S 2.42 28.41 5.34 -56.49 -0.30 28.11 16 11 C -0.64 -2.22 10.62 113.37 1.20 -1.01 16 12 O -0.99 -20.99 18.10 -127.37 -2.31 -23.30 16 13 O -0.98 -18.57 17.19 -127.37 -2.19 -20.75 16 14 C -0.13 -1.52 7.34 31.12 0.23 -1.29 16 15 C -0.16 -4.09 4.72 -19.83 -0.09 -4.19 16 16 C -0.07 -2.23 9.66 22.25 0.21 -2.01 16 17 C -0.24 -10.16 9.17 22.39 0.21 -9.96 16 18 C 0.12 5.40 6.65 22.58 0.15 5.55 16 19 O -0.25 -13.22 8.59 -22.72 -0.20 -13.41 16 20 C -0.40 -23.35 9.95 67.92 0.68 -22.67 16 21 H 0.08 4.88 5.44 -2.91 -0.02 4.87 16 22 C 0.01 0.45 5.49 84.83 0.47 0.92 16 23 N -0.92 -55.12 13.96 21.61 0.30 -54.82 16 24 Si 0.97 45.19 28.62 68.60 1.96 47.15 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 28 C -0.19 -6.95 9.99 22.39 0.22 -6.72 16 29 C -0.05 -1.27 9.00 22.25 0.20 -1.07 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.07 0.90 8.02 -2.39 -0.02 0.88 16 33 H 0.35 5.54 7.64 -89.70 -0.69 4.86 16 34 H 0.11 0.88 7.36 -2.38 -0.02 0.87 16 35 H 0.11 0.68 8.09 -2.39 -0.02 0.66 16 36 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.15 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.09 1.09 7.91 -2.39 -0.02 1.07 16 40 H 0.10 1.15 8.10 -2.39 -0.02 1.14 16 41 H 0.13 3.58 8.03 -2.91 -0.02 3.56 16 42 H 0.10 4.98 5.64 -2.91 -0.02 4.96 16 43 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 45 H 0.16 3.26 7.71 -2.91 -0.02 3.24 16 Total: -1.00 -78.32 383.05 -0.25 -78.57 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.32 Total: 16.29 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 4.82 Total: -45.53 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -2.35 Total: -67.13 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -4.69 Total: -57.46 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.96 Total: 47.15 kcal Atomic # 16 Polarization: 28.41 SS G_CDS: -0.30 Total: 28.11 kcal Total: -78.32 -0.25 -78.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883374913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.788 kcal (2) G-P(sol) polarization free energy of solvation -78.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds