Wall clock time and date at job start Tue Mar 31 2020 22:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47768 * 2 1 4 4 N 1.46907 * 109.46791 * 239.99874 * 2 1 3 5 5 C 1.46897 * 110.99689 * 85.00632 * 4 2 1 6 6 H 1.09002 * 112.90882 * 336.24694 * 5 4 2 7 7 C 1.53781 * 113.61647 * 107.50208 * 5 4 2 8 8 C 1.53781 * 87.08196 * 89.11516 * 7 5 4 9 9 H 1.08997 * 113.61143 * 270.88812 * 8 7 5 10 10 S 1.81398 * 113.69193 * 139.99366 * 8 7 5 11 11 C 1.81396 * 101.92255 * 82.46192 * 10 8 7 12 12 O 1.42105 * 108.57528 * 196.95063 * 10 8 7 13 13 O 1.42096 * 108.57600 * 327.97395 * 10 8 7 14 14 C 1.53785 * 87.08321 * 25.43258 * 8 7 5 15 15 C 1.50704 * 109.47123 * 120.00296 * 2 1 3 16 16 C 1.38301 * 119.93053 * 79.72279 * 15 2 1 17 17 C 1.38095 * 120.06868 * 179.72705 * 16 15 2 18 18 C 1.38885 * 119.92694 * 0.54585 * 17 16 15 19 19 O 1.35752 * 120.06541 * 179.74657 * 18 17 16 20 20 C 1.34828 * 116.99667 * 174.43953 * 19 18 17 21 21 H 1.08003 * 120.00112 * 5.06486 * 20 19 18 22 22 C 1.38658 * 119.99873 * 185.05581 * 20 19 18 23 23 N 1.31556 * 120.00123 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99860 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46698 * 60.00411 * 24 22 20 26 26 H 1.48501 * 109.46856 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47186 * 300.00234 * 24 22 20 28 28 C 1.38876 * 119.86453 * 359.72852 * 18 17 16 29 29 C 1.38102 * 119.93067 * 359.97438 * 28 18 17 30 30 H 1.08996 * 109.47768 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47304 * 300.00078 * 1 2 3 32 32 H 1.09002 * 109.47419 * 59.99728 * 1 2 3 33 33 H 1.00900 * 110.99881 * 208.95760 * 4 2 1 34 34 H 1.09004 * 113.61047 * 203.66153 * 7 5 4 35 35 H 1.08997 * 113.61155 * 334.56330 * 7 5 4 36 36 H 1.09007 * 109.47262 * 60.00235 * 11 10 8 37 37 H 1.08998 * 109.47128 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.47260 * 299.99921 * 11 10 8 39 39 H 1.08996 * 113.61503 * 220.02519 * 14 8 7 40 40 H 1.08997 * 113.69299 * 89.12860 * 14 8 7 41 41 H 1.07999 * 119.96613 * 359.97438 * 16 15 2 42 42 H 1.08003 * 120.03766 * 180.27259 * 17 16 15 43 43 H 0.97001 * 119.99929 * 179.97438 * 23 22 20 44 44 H 1.07995 * 120.03259 * 180.02562 * 28 18 17 45 45 H 1.07994 * 119.96908 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0195 -0.6926 -1.1995 5 6 2.0824 0.2226 -2.3469 6 1 1.4078 1.0731 -2.2487 7 6 3.5152 0.6155 -2.7437 8 6 3.5158 -0.6192 -3.6605 9 1 3.8610 -1.5283 -3.1682 10 16 4.3188 -0.3372 -5.2625 11 6 6.0702 -0.5653 -4.8491 12 8 3.9256 -1.3714 -6.1542 13 8 4.1151 1.0179 -5.6386 14 6 1.9844 -0.4877 -3.7074 15 6 2.0323 -0.7105 1.2305 16 6 2.0607 -2.0928 1.2659 17 6 2.5257 -2.7467 2.3898 18 6 2.9545 -2.0148 3.4895 19 8 3.4074 -2.6549 4.5978 20 6 3.9153 -1.8874 5.5831 21 1 3.8737 -0.8110 5.5052 22 6 4.4908 -2.4802 6.6967 23 7 4.5417 -3.7913 6.7915 24 14 5.1939 -1.4169 8.0623 25 1 4.1192 -0.5613 8.6264 26 1 5.7475 -2.2864 9.1313 27 1 6.2742 -0.5580 7.5144 28 6 2.9194 -0.6270 3.4530 29 6 2.4590 0.0211 2.3238 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.9172 -1.1206 -1.0288 34 1 3.5751 1.5604 -3.2839 35 1 4.2291 0.5501 -1.9227 36 1 6.2246 -1.5737 -4.4650 37 1 6.6764 -0.4208 -5.7434 38 1 6.3621 0.1611 -4.0906 39 1 1.4625 -1.4436 -3.6642 40 1 1.6244 0.1552 -4.5106 41 1 1.7226 -2.6613 0.4122 42 1 2.5518 -3.8261 2.4152 43 1 4.9447 -4.2060 7.5704 44 1 3.2526 -0.0552 4.3065 45 1 2.4318 1.1003 2.2945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883374914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:09 Heat of formation + Delta-G solvation = -46.100892 kcal Electronic energy + Delta-G solvation = -26631.234556 eV Core-core repulsion = 22742.785805 eV Total energy + Delta-G solvation = -3888.448750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -39.90649 -39.02757 -37.30925 -37.06219 -36.32617 -34.56734 -32.30182 -30.34586 -30.04449 -29.69692 -28.00555 -26.16351 -25.57696 -25.33403 -22.52210 -22.01508 -20.12848 -19.89722 -18.96960 -18.02808 -17.70882 -16.98233 -16.49665 -16.28659 -15.86772 -15.43252 -14.93595 -14.57900 -14.33931 -14.11229 -13.84396 -13.67249 -13.62474 -13.57314 -13.20878 -13.01896 -12.91054 -12.77363 -12.64899 -12.42920 -12.38788 -12.28380 -11.92396 -11.72614 -11.52986 -11.36052 -11.28349 -11.20838 -11.03387 -10.79068 -10.71521 -10.49523 -10.42157 -10.18575 -9.40794 -8.88432 -8.53708 -8.24727 -7.25363 -6.50908 -4.10108 -0.32410 2.15181 2.22036 2.38004 3.08622 3.09222 3.12505 3.22370 3.48686 3.85037 3.91344 3.97291 4.04616 4.40113 4.43310 4.48849 4.53727 4.69325 5.01685 5.04151 5.15659 5.18809 5.25481 5.27707 5.36125 5.36195 5.49878 5.61445 5.63445 5.64171 5.66983 5.80698 5.96341 5.96870 6.16371 6.32808 6.40239 6.65627 6.79280 6.95166 6.96663 7.18766 7.30420 7.36562 7.43058 7.75920 7.93754 8.94491 9.64136 10.66861 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002148 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.433233 B =13033.870323 C =13724.609451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.143 3.857 3 H 0.045 0.955 4 N -0.663 5.663 5 C 0.082 3.918 6 H 0.093 0.907 7 C -0.146 4.146 8 C -0.598 4.598 9 H 0.153 0.847 10 S 2.421 3.579 11 C -0.656 4.656 12 O -0.943 6.943 13 O -0.941 6.941 14 C -0.100 4.100 15 C -0.196 4.196 16 C -0.056 4.056 17 C -0.195 4.195 18 C 0.155 3.845 19 O -0.177 6.177 20 C -0.393 4.393 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.235 4.235 29 C -0.064 4.064 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.348 0.652 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.271 0.729 44 H 0.126 0.874 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 8.681 -19.408 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.035 3.965 3 H 0.063 0.937 4 N -0.295 5.295 5 C -0.031 4.031 6 H 0.111 0.889 7 C -0.186 4.186 8 C -0.708 4.708 9 H 0.170 0.830 10 S 2.605 3.395 11 C -0.805 4.805 12 O -0.940 6.940 13 O -0.938 6.938 14 C -0.139 4.139 15 C -0.197 4.197 16 C -0.075 4.075 17 C -0.215 4.215 18 C 0.101 3.899 19 O -0.080 6.080 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.496 5.496 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.254 4.254 29 C -0.083 4.083 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.169 0.831 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.729 8.194 -20.148 21.819 hybrid contribution 1.743 0.763 1.748 2.584 sum 0.014 8.956 -18.400 20.464 Atomic orbital electron populations 1.21796 0.94394 1.02408 1.00520 1.20181 0.95216 0.94607 0.86541 0.93745 1.60433 1.33595 1.31444 1.04012 1.22489 0.94839 0.94639 0.91119 0.88928 1.23507 1.00792 0.95221 0.99114 1.31653 1.10123 1.08617 1.20414 0.82955 1.07807 0.78434 0.75352 0.77950 1.30244 1.25819 1.11935 1.12541 1.93592 1.80897 1.58797 1.60684 1.93584 1.84594 1.34757 1.80874 1.22758 0.89248 1.03453 0.98475 1.19242 1.10536 0.93779 0.96162 1.20488 0.97033 0.93362 0.96585 1.20257 1.08809 0.99439 0.92957 1.19434 0.91937 0.90932 0.87555 1.83981 1.67085 1.35099 1.21802 1.21275 1.38135 0.90663 0.96887 0.89132 1.25295 0.96690 0.96324 0.98160 1.70026 1.41378 1.08752 1.29472 0.85785 0.79275 0.78924 0.79473 1.19472 1.20229 1.19515 1.21118 1.09847 0.94424 1.00028 1.20577 0.96844 0.98109 0.92737 0.91946 0.92594 0.93404 0.83124 0.87512 0.89577 0.85284 0.85532 0.85287 0.88465 0.88938 0.86330 0.86592 0.91899 0.85635 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.38 37.15 0.35 -1.16 16 2 C 0.14 1.69 2.67 -68.86 -0.18 1.51 16 3 H 0.04 0.50 7.70 -51.93 -0.40 0.10 16 4 N -0.66 -6.72 5.76 -100.10 -0.58 -7.30 16 5 C 0.08 0.67 3.97 -66.90 -0.27 0.41 16 6 H 0.09 0.74 7.49 -51.93 -0.39 0.35 16 7 C -0.15 -0.99 7.15 -25.92 -0.19 -1.18 16 8 C -0.60 -3.85 3.93 -25.92 -0.10 -3.95 16 9 H 0.15 0.76 8.08 -51.93 -0.42 0.34 16 10 S 2.42 17.70 5.34 -107.50 -0.57 17.12 16 11 C -0.66 -2.97 10.62 101.05 1.07 -1.90 16 12 O -0.94 -10.58 18.10 -57.83 -1.05 -11.63 16 13 O -0.94 -9.82 17.20 -57.83 -0.99 -10.81 16 14 C -0.10 -0.77 7.47 -25.91 -0.19 -0.96 16 15 C -0.20 -2.99 4.71 -104.57 -0.49 -3.48 16 16 C -0.06 -0.92 9.00 -39.61 -0.36 -1.28 16 17 C -0.20 -3.92 9.99 -39.39 -0.39 -4.32 16 18 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 19 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 20 C -0.39 -10.73 9.49 30.89 0.29 -10.44 16 21 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 24 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 28 C -0.23 -4.85 9.17 -39.40 -0.36 -5.21 16 29 C -0.06 -1.08 9.66 -39.61 -0.38 -1.46 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.05 0.47 7.74 -51.93 -0.40 0.07 16 33 H 0.35 3.57 7.38 -39.29 -0.29 3.28 16 34 H 0.11 0.68 7.37 -51.93 -0.38 0.30 16 35 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 36 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.13 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.64 8.10 -51.93 -0.42 0.21 16 41 H 0.12 1.71 7.72 -52.49 -0.41 1.31 16 42 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 45 H 0.10 1.50 8.03 -52.49 -0.42 1.08 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -34.60 383.79 -9.84 -44.44 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.61 Total: 5.47 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: -1.56 Total: -29.10 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.18 Total: -31.38 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -2.04 Total: -27.36 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 17.70 SS G_CDS: -0.57 Total: 17.12 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.60 -9.84 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883374914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.659 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds