Wall clock time and date at job start Tue Mar 31 2020 22:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47768 * 2 1 4 4 N 1.46907 * 109.46791 * 239.99874 * 2 1 3 5 5 C 1.46897 * 110.99689 * 85.00632 * 4 2 1 6 6 H 1.09002 * 112.90882 * 336.24694 * 5 4 2 7 7 C 1.53781 * 113.61647 * 107.50208 * 5 4 2 8 8 C 1.53781 * 87.08196 * 89.11516 * 7 5 4 9 9 H 1.08997 * 113.61143 * 270.88812 * 8 7 5 10 10 S 1.81398 * 113.69193 * 139.99366 * 8 7 5 11 11 C 1.81396 * 101.92255 * 82.46192 * 10 8 7 12 12 O 1.42105 * 108.57528 * 196.95063 * 10 8 7 13 13 O 1.42096 * 108.57600 * 327.97395 * 10 8 7 14 14 C 1.53785 * 87.08321 * 25.43258 * 8 7 5 15 15 C 1.50704 * 109.47123 * 120.00296 * 2 1 3 16 16 C 1.38301 * 119.93053 * 79.72279 * 15 2 1 17 17 C 1.38095 * 120.06868 * 179.72705 * 16 15 2 18 18 C 1.38885 * 119.92694 * 0.54585 * 17 16 15 19 19 O 1.35752 * 120.06541 * 179.74657 * 18 17 16 20 20 C 1.34828 * 116.99667 * 174.43953 * 19 18 17 21 21 H 1.08003 * 120.00112 * 5.06486 * 20 19 18 22 22 C 1.38658 * 119.99873 * 185.05581 * 20 19 18 23 23 N 1.31556 * 120.00123 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99860 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46698 * 60.00411 * 24 22 20 26 26 H 1.48501 * 109.46856 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47186 * 300.00234 * 24 22 20 28 28 C 1.38876 * 119.86453 * 359.72852 * 18 17 16 29 29 C 1.38102 * 119.93067 * 359.97438 * 28 18 17 30 30 H 1.08996 * 109.47768 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47304 * 300.00078 * 1 2 3 32 32 H 1.09002 * 109.47419 * 59.99728 * 1 2 3 33 33 H 1.00900 * 110.99881 * 208.95760 * 4 2 1 34 34 H 1.09004 * 113.61047 * 203.66153 * 7 5 4 35 35 H 1.08997 * 113.61155 * 334.56330 * 7 5 4 36 36 H 1.09007 * 109.47262 * 60.00235 * 11 10 8 37 37 H 1.08998 * 109.47128 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.47260 * 299.99921 * 11 10 8 39 39 H 1.08996 * 113.61503 * 220.02519 * 14 8 7 40 40 H 1.08997 * 113.69299 * 89.12860 * 14 8 7 41 41 H 1.07999 * 119.96613 * 359.97438 * 16 15 2 42 42 H 1.08003 * 120.03766 * 180.27259 * 17 16 15 43 43 H 0.97001 * 119.99929 * 179.97438 * 23 22 20 44 44 H 1.07995 * 120.03259 * 180.02562 * 28 18 17 45 45 H 1.07994 * 119.96908 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0195 -0.6926 -1.1995 5 6 2.0824 0.2226 -2.3469 6 1 1.4078 1.0731 -2.2487 7 6 3.5152 0.6155 -2.7437 8 6 3.5158 -0.6192 -3.6605 9 1 3.8610 -1.5283 -3.1682 10 16 4.3188 -0.3372 -5.2625 11 6 6.0702 -0.5653 -4.8491 12 8 3.9256 -1.3714 -6.1542 13 8 4.1151 1.0179 -5.6386 14 6 1.9844 -0.4877 -3.7074 15 6 2.0323 -0.7105 1.2305 16 6 2.0607 -2.0928 1.2659 17 6 2.5257 -2.7467 2.3898 18 6 2.9545 -2.0148 3.4895 19 8 3.4074 -2.6549 4.5978 20 6 3.9153 -1.8874 5.5831 21 1 3.8737 -0.8110 5.5052 22 6 4.4908 -2.4802 6.6967 23 7 4.5417 -3.7913 6.7915 24 14 5.1939 -1.4169 8.0623 25 1 4.1192 -0.5613 8.6264 26 1 5.7475 -2.2864 9.1313 27 1 6.2742 -0.5580 7.5144 28 6 2.9194 -0.6270 3.4530 29 6 2.4590 0.0211 2.3238 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.9172 -1.1206 -1.0288 34 1 3.5751 1.5604 -3.2839 35 1 4.2291 0.5501 -1.9227 36 1 6.2246 -1.5737 -4.4650 37 1 6.6764 -0.4208 -5.7434 38 1 6.3621 0.1611 -4.0906 39 1 1.4625 -1.4436 -3.6642 40 1 1.6244 0.1552 -4.5106 41 1 1.7226 -2.6613 0.4122 42 1 2.5518 -3.8261 2.4152 43 1 4.9447 -4.2060 7.5704 44 1 3.2526 -0.0552 4.3065 45 1 2.4318 1.1003 2.2945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883374914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:09 Heat of formation + Delta-G solvation = -71.336819 kcal Electronic energy + Delta-G solvation = -26632.328868 eV Core-core repulsion = 22742.785805 eV Total energy + Delta-G solvation = -3889.543062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97315 -40.26751 -38.58751 -37.95771 -37.02122 -35.72798 -34.20322 -31.82826 -30.89295 -30.33629 -29.28057 -27.35963 -26.70835 -26.11981 -23.86615 -23.46314 -21.42299 -20.57473 -19.81346 -19.51780 -18.87951 -18.23011 -17.11397 -16.92273 -16.76956 -16.58282 -16.22877 -16.00996 -15.54004 -15.47406 -15.20753 -14.97592 -14.41311 -14.12687 -14.02961 -13.95479 -13.85799 -13.77406 -13.58400 -13.52224 -13.49164 -13.13122 -13.02181 -12.98164 -12.80616 -12.51316 -12.30481 -12.26507 -12.14298 -11.95124 -11.83641 -11.63701 -11.49896 -11.16739 -10.82554 -10.76256 -9.75456 -9.32330 -8.89681 -8.46684 -6.14804 -0.86905 0.62304 0.70189 1.35131 1.45493 1.51208 1.87333 2.17951 2.68038 2.81813 2.94068 3.09924 3.21181 3.40448 3.50141 3.54222 3.78545 3.95420 4.05205 4.10966 4.13925 4.24854 4.27044 4.47890 4.56932 4.60987 4.64111 4.68187 4.77911 4.82408 4.88754 4.97504 5.00175 5.03873 5.08882 5.11399 5.16110 5.23387 5.32996 5.48565 5.60084 5.73452 5.76327 6.03719 6.22222 6.27822 6.52375 6.98192 7.79887 8.76355 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002148 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.433233 B =13033.870323 C =13724.609451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.148 3.852 3 H 0.062 0.938 4 N -0.666 5.666 5 C 0.077 3.923 6 H 0.100 0.900 7 C -0.142 4.142 8 C -0.587 4.587 9 H 0.171 0.829 10 S 2.426 3.574 11 C -0.644 4.644 12 O -0.989 6.989 13 O -0.978 6.978 14 C -0.109 4.109 15 C -0.163 4.163 16 C -0.045 4.045 17 C -0.206 4.206 18 C 0.114 3.886 19 O -0.234 6.234 20 C -0.413 4.413 21 H 0.102 0.898 22 C -0.023 4.023 23 N -0.922 5.922 24 Si 1.017 2.983 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.257 1.257 28 C -0.243 4.243 29 C -0.061 4.061 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.349 0.651 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 11.195 -20.908 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.080 0.920 4 N -0.298 5.298 5 C -0.035 4.035 6 H 0.118 0.882 7 C -0.182 4.182 8 C -0.698 4.698 9 H 0.188 0.812 10 S 2.614 3.386 11 C -0.796 4.796 12 O -0.987 6.987 13 O -0.975 6.975 14 C -0.148 4.148 15 C -0.164 4.164 16 C -0.063 4.063 17 C -0.226 4.226 18 C 0.063 3.937 19 O -0.140 6.140 20 C -0.489 4.489 21 H 0.119 0.881 22 C -0.221 4.221 23 N -0.560 5.560 24 Si 0.836 3.164 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.181 1.181 28 C -0.262 4.262 29 C -0.080 4.080 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.170 0.830 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.164 0.836 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.612 10.746 -21.734 24.299 hybrid contribution 1.551 0.072 1.856 2.420 sum -0.062 10.818 -19.878 22.631 Atomic orbital electron populations 1.21782 0.93687 1.02073 1.01492 1.20183 0.95633 0.95010 0.85306 0.91965 1.60392 1.33818 1.31886 1.03696 1.22524 0.96065 0.94565 0.90320 0.88203 1.23511 0.99951 0.95423 0.99291 1.31592 1.09240 1.09508 1.19445 0.81168 1.07381 0.79672 0.73714 0.77852 1.30118 1.22059 1.13793 1.13672 1.93534 1.82525 1.59735 1.62878 1.93532 1.85806 1.36240 1.81933 1.22822 0.90145 1.03373 0.98442 1.19734 1.06443 0.93360 0.96891 1.20766 0.95530 0.94210 0.95842 1.20483 1.09160 0.99441 0.93478 1.19976 0.93541 0.92519 0.87639 1.83945 1.69978 1.36558 1.23565 1.21768 1.38352 0.91366 0.97413 0.88094 1.26578 0.96951 0.97778 1.00765 1.70178 1.44024 1.11002 1.30772 0.84667 0.78837 0.77077 0.75771 1.18200 1.19768 1.18084 1.21219 1.10305 0.93429 1.01258 1.20939 0.95500 0.99974 0.91561 0.92964 0.92759 0.91438 0.83029 0.87025 0.88546 0.83442 0.84772 0.83282 0.88926 0.88551 0.83626 0.87314 0.91875 0.86545 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.38 71.98 0.68 -1.79 16 2 C 0.15 2.82 2.67 44.17 0.12 2.94 16 3 H 0.06 1.05 7.70 -2.39 -0.02 1.03 16 4 N -0.67 -10.76 5.76 -470.60 -2.71 -13.47 16 5 C 0.08 0.98 3.97 45.44 0.18 1.16 16 6 H 0.10 1.17 7.49 -2.39 -0.02 1.15 16 7 C -0.14 -1.40 7.15 31.12 0.22 -1.18 16 8 C -0.59 -5.86 3.93 31.12 0.12 -5.74 16 9 H 0.17 1.09 8.08 -2.39 -0.02 1.07 16 10 S 2.43 31.55 5.34 -56.49 -0.30 31.25 16 11 C -0.64 -3.80 10.62 113.37 1.20 -2.60 16 12 O -0.99 -21.70 18.10 -127.37 -2.31 -24.01 16 13 O -0.98 -19.32 17.20 -127.37 -2.19 -21.51 16 14 C -0.11 -1.39 7.47 31.12 0.23 -1.16 16 15 C -0.16 -4.43 4.71 -19.83 -0.09 -4.52 16 16 C -0.05 -1.39 9.00 22.25 0.20 -1.19 16 17 C -0.21 -8.38 9.99 22.39 0.22 -8.16 16 18 C 0.11 5.45 6.65 22.58 0.15 5.60 16 19 O -0.23 -13.83 9.76 -22.74 -0.22 -14.05 16 20 C -0.41 -23.61 9.49 67.92 0.64 -22.96 16 21 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 23 N -0.92 -56.05 13.67 21.61 0.30 -55.76 16 24 Si 1.02 42.01 29.55 68.60 2.03 44.03 16 25 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 28 C -0.24 -9.99 9.17 22.39 0.21 -9.78 16 29 C -0.06 -1.90 9.66 22.25 0.21 -1.68 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.07 1.03 7.74 -2.39 -0.02 1.01 16 33 H 0.35 5.64 7.38 -89.69 -0.66 4.98 16 34 H 0.11 1.06 7.37 -2.39 -0.02 1.04 16 35 H 0.10 0.80 8.07 -2.39 -0.02 0.78 16 36 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.16 8.10 -2.39 -0.02 1.14 16 41 H 0.15 3.73 7.72 -2.91 -0.02 3.70 16 42 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.12 4.92 5.64 -2.91 -0.02 4.91 16 45 H 0.14 3.38 8.03 -2.91 -0.02 3.36 16 Total: -1.00 -80.72 383.79 -0.30 -81.02 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.34 Total: 24.39 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 4.77 Total: -51.90 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -2.42 Total: -69.22 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -4.72 Total: -59.57 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 31.55 SS G_CDS: -0.30 Total: 31.25 kcal Total: -80.72 -0.30 -81.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883374914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.687 kcal (2) G-P(sol) polarization free energy of solvation -80.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds