Wall clock time and date at job start Tue Mar 31 2020 22:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.47363 * 2 1 4 4 N 1.46503 * 109.46491 * 240.00169 * 2 1 3 5 5 S 1.65602 * 120.00008 * 95.00676 * 4 2 1 6 6 O 1.42097 * 106.40279 * 178.53461 * 5 4 2 7 7 O 1.42103 * 106.39701 * 311.45204 * 5 4 2 8 8 C 1.76198 * 107.21898 * 64.99125 * 5 4 2 9 9 C 1.38238 * 120.00516 * 269.72751 * 8 5 4 10 10 C 1.38234 * 120.00277 * 179.76771 * 9 8 5 11 11 C 1.38232 * 119.99473 * 0.50855 * 10 9 8 12 12 C 1.50701 * 119.99752 * 179.72592 * 11 10 9 13 13 C 1.50699 * 109.47065 * 270.02382 * 12 11 10 14 14 H 1.07998 * 120.00019 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00056 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00027 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99944 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47451 * 90.00020 * 17 15 13 19 19 H 1.48506 * 109.47186 * 209.99790 * 17 15 13 20 20 H 1.48498 * 109.47315 * 329.99732 * 17 15 13 21 21 C 1.38234 * 120.00426 * 359.74599 * 11 10 9 22 22 C 1.38229 * 120.00075 * 359.97438 * 21 11 10 23 23 C 1.52995 * 109.47065 * 120.00514 * 2 1 3 24 24 H 1.09005 * 110.46158 * 56.24909 * 23 2 1 25 25 C 1.54511 * 110.51368 * 178.85379 * 23 2 1 26 26 C 1.54476 * 104.06252 * 118.64145 * 25 23 2 27 27 O 1.44429 * 104.80505 * 23.98273 * 26 25 23 28 28 C 1.44422 * 105.27092 * 319.48694 * 27 26 25 29 29 H 1.09001 * 109.46367 * 305.28360 * 1 2 3 30 30 H 1.09004 * 109.47057 * 65.27843 * 1 2 3 31 31 H 1.08997 * 109.46986 * 185.28593 * 1 2 3 32 32 H 0.97000 * 120.00205 * 274.99296 * 4 2 1 33 33 H 1.08005 * 119.99544 * 0.02562 * 9 8 5 34 34 H 1.07995 * 120.00070 * 180.23026 * 10 9 8 35 35 H 1.09001 * 109.47111 * 30.01627 * 12 11 10 36 36 H 1.09001 * 109.47454 * 150.02108 * 12 11 10 37 37 H 0.97006 * 119.99922 * 180.02562 * 16 15 13 38 38 H 1.08002 * 119.99833 * 179.97438 * 21 11 10 39 39 H 1.07999 * 120.00272 * 179.97438 * 22 21 11 40 40 H 1.08997 * 110.51114 * 237.28633 * 25 23 2 41 41 H 1.09000 * 110.50551 * 359.97438 * 25 23 2 42 42 H 1.09004 * 110.37385 * 142.81194 * 26 25 23 43 43 H 1.09004 * 110.37426 * 265.14994 * 26 25 23 44 44 H 1.09003 * 110.37174 * 281.67824 * 28 27 26 45 45 H 1.09003 * 110.36742 * 159.34563 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 16 2.4122 0.1772 -2.5505 6 8 2.8776 -0.7634 -3.5086 7 8 1.3246 1.0593 -2.7921 8 6 3.7928 1.1910 -2.1372 9 6 3.5907 2.4638 -1.6372 10 6 4.6738 3.2573 -1.3084 11 6 5.9591 2.7819 -1.4894 12 6 7.1399 3.6492 -1.1368 13 6 7.5415 4.4641 -2.3391 14 1 6.9965 4.3636 -3.2661 15 6 8.6048 5.3379 -2.2558 16 7 9.2682 5.4606 -1.1270 17 14 9.1031 6.3474 -3.7465 18 1 8.3648 7.6359 -3.7411 19 1 10.5633 6.6135 -3.6985 20 1 8.7774 5.5955 -4.9849 21 6 6.1613 1.5110 -1.9943 22 6 5.0782 0.7154 -2.3177 23 6 2.0401 -0.7213 1.2491 24 1 1.6321 -1.7309 1.2994 25 6 3.5846 -0.7605 1.2591 26 6 3.9716 0.0182 2.5358 27 8 2.8152 -0.0837 3.3951 28 6 1.6767 0.0764 2.5211 29 1 -0.3632 0.5936 0.8389 30 1 -0.3633 0.4298 -0.9335 31 1 -0.3633 -1.0233 0.0947 32 1 2.1110 -1.6562 -1.1950 33 1 2.5865 2.8367 -1.4996 34 1 4.5158 4.2503 -0.9143 35 1 6.8688 4.3173 -0.3193 36 1 7.9747 3.0192 -0.8295 37 1 10.0161 6.0756 -1.0683 38 1 7.1655 1.1398 -2.1361 39 1 5.2361 -0.2774 -2.7126 40 1 3.9402 -1.7892 1.3167 41 1 3.9848 -0.2663 0.3738 42 1 4.8391 -0.4396 3.0113 43 1 4.1757 1.0619 2.2966 44 1 1.5288 1.1290 2.2796 45 1 0.7811 -0.3368 2.9853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885033361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:28 Heat of formation + Delta-G solvation = -134.822215 kcal Electronic energy + Delta-G solvation = -28020.566926 eV Core-core repulsion = 24128.270930 eV Total energy + Delta-G solvation = -3892.295996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64451 -40.22312 -38.37947 -37.32098 -36.95822 -35.60209 -33.32825 -32.60762 -31.96916 -31.20323 -29.25372 -28.87893 -25.59938 -24.55924 -23.76158 -23.15970 -22.48154 -21.42429 -20.54582 -19.00734 -18.60089 -18.37896 -17.71649 -17.20118 -16.85706 -16.64588 -16.33260 -16.00494 -15.94306 -15.54064 -15.28356 -14.70215 -14.63608 -14.47166 -14.27932 -13.95978 -13.77539 -13.54933 -13.41600 -13.40857 -13.25216 -13.15085 -13.09794 -12.69890 -12.67351 -12.54660 -12.32075 -12.17355 -12.04261 -11.92382 -11.86353 -11.67882 -11.49014 -11.34232 -10.73811 -10.65977 -10.53674 -9.96250 -9.94952 -8.27812 -6.40488 -0.62941 -0.07004 0.39510 1.37737 1.38301 1.49463 1.99026 2.34110 2.56230 2.81819 3.05127 3.05578 3.31959 3.60812 3.67321 3.86266 3.91243 3.97031 4.15393 4.19616 4.24712 4.25987 4.36575 4.47183 4.47953 4.50295 4.62077 4.81180 4.86615 4.87538 4.90750 4.92357 4.99939 5.09740 5.11407 5.15138 5.24668 5.25923 5.33081 5.33855 5.44786 5.66540 5.86545 5.86985 5.91912 6.09290 6.12601 6.71526 7.28830 8.82174 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.003419 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.230341 B = 8187.996630 C = 9527.468974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.154 3.846 3 H 0.083 0.917 4 N -1.096 6.096 5 S 2.722 3.278 6 O -0.987 6.987 7 O -0.979 6.979 8 C -0.700 4.700 9 C -0.019 4.019 10 C -0.153 4.153 11 C -0.001 4.001 12 C 0.049 3.951 13 C -0.534 4.534 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.153 4.153 22 C -0.016 4.016 23 C -0.116 4.116 24 H 0.112 0.888 25 C -0.154 4.154 26 C 0.037 3.963 27 O -0.397 6.397 28 C 0.045 3.955 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.430 0.570 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.267 0.733 38 H 0.128 0.872 39 H 0.154 0.846 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 -15.053 5.655 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.048 3.952 3 H 0.101 0.899 4 N -0.859 5.859 5 S 2.812 3.188 6 O -0.977 6.977 7 O -0.969 6.969 8 C -0.787 4.787 9 C -0.039 4.039 10 C -0.172 4.172 11 C -0.002 4.002 12 C 0.012 3.988 13 C -0.572 4.572 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.787 3.213 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.172 4.172 22 C -0.035 4.035 23 C -0.136 4.136 24 H 0.130 0.870 25 C -0.192 4.192 26 C -0.040 4.040 27 O -0.316 6.316 28 C -0.032 4.032 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.268 0.732 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.146 0.854 39 H 0.172 0.828 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.863 -14.844 5.152 23.790 hybrid contribution 1.635 0.939 -0.373 1.922 sum -16.228 -13.905 4.778 21.898 Atomic orbital electron populations 1.22385 0.93392 1.04069 1.03467 1.20958 0.95440 0.95631 0.83214 0.89923 1.55322 1.81331 1.19860 1.29370 1.00905 0.72903 0.72571 0.72451 1.93542 1.82547 1.62506 1.59117 1.93547 1.52026 1.67240 1.84086 1.30779 1.16111 1.11250 1.20544 1.21016 0.99795 0.91400 0.91643 1.21275 0.92002 1.00706 1.03169 1.20794 0.95926 0.93715 0.89731 1.18254 0.90860 0.93418 0.96299 1.21295 1.15060 1.23366 0.97490 0.92831 1.25836 0.96016 0.97926 0.99015 1.70051 1.21428 1.37748 1.27192 0.85486 0.77581 0.78947 0.79313 1.19677 1.20363 1.19248 1.21279 0.99837 0.94363 1.01733 1.20986 0.90496 0.99686 0.92365 1.22823 0.95309 1.01743 0.93739 0.87001 1.23049 0.95666 1.02286 0.98211 1.23501 0.89779 0.99779 0.90902 1.89109 1.16036 1.93945 1.32539 1.23660 0.90253 0.99978 0.89343 0.89767 0.92268 0.90295 0.73210 0.82767 0.85408 0.96887 0.96893 0.92389 0.85426 0.82810 0.89246 0.90554 0.88775 0.93079 0.91645 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.28 71.99 0.67 -1.29 16 2 C 0.15 2.06 2.09 44.99 0.09 2.15 16 3 H 0.08 1.23 7.16 -2.39 -0.02 1.21 16 4 N -1.10 -16.07 4.82 -169.38 -0.82 -16.89 16 5 S 2.72 63.65 5.65 -56.49 -0.32 63.33 16 6 O -0.99 -28.01 17.28 -128.00 -2.21 -30.22 16 7 O -0.98 -27.26 16.49 -128.00 -2.11 -29.37 16 8 C -0.70 -19.24 5.82 22.27 0.13 -19.12 16 9 C -0.02 -0.57 8.92 22.27 0.20 -0.37 16 10 C -0.15 -5.42 9.70 22.27 0.22 -5.20 16 11 C 0.00 -0.05 5.07 -19.87 -0.10 -0.16 16 12 C 0.05 2.44 5.10 29.10 0.15 2.59 16 13 C -0.53 -29.42 9.09 25.60 0.23 -29.19 16 14 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.62 5.46 84.66 0.46 1.08 16 16 N -0.92 -53.79 13.29 21.45 0.28 -53.51 16 17 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C -0.15 -5.47 9.70 22.27 0.22 -5.25 16 22 C -0.02 -0.48 9.52 22.27 0.21 -0.26 16 23 C -0.12 -1.37 2.79 -9.78 -0.03 -1.40 16 24 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 25 C -0.15 -2.36 6.46 31.61 0.20 -2.16 16 26 C 0.04 0.71 7.63 72.48 0.55 1.26 16 27 O -0.40 -8.17 11.65 -148.98 -1.74 -9.90 16 28 C 0.04 0.61 6.42 72.48 0.47 1.08 16 29 H 0.08 0.70 7.66 -2.39 -0.02 0.68 16 30 H 0.06 0.90 7.59 -2.38 -0.02 0.88 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.43 4.20 8.84 -96.75 -0.85 3.34 16 33 H 0.15 3.66 7.61 -2.91 -0.02 3.63 16 34 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.01 0.68 8.09 -2.39 -0.02 0.67 16 36 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 37 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 38 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.15 3.72 7.62 -2.91 -0.02 3.70 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.32 7.43 -2.39 -0.02 1.30 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 0.87 7.81 -2.39 -0.02 0.85 16 45 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.13 381.99 -1.07 -72.20 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.14 Total: 15.26 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 3.67 Total: -56.22 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -0.53 Total: -70.40 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -6.06 Total: -69.50 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 63.65 SS G_CDS: -0.32 Total: 63.33 kcal Total: -71.13 -1.07 -72.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885033361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.620 kcal (2) G-P(sol) polarization free energy of solvation -71.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds