Wall clock time and date at job start Tue Mar 31 2020 23:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46502 * 119.99854 * 2 1 4 4 C 1.52997 * 109.47454 * 85.62862 * 3 2 1 5 5 H 1.09007 * 110.74981 * 57.74833 * 4 3 2 6 6 C 1.55296 * 110.85241 * 181.44502 * 4 3 2 7 7 C 1.54945 * 100.94621 * 152.32383 * 6 4 3 8 8 O 1.43643 * 105.13617 * 323.55851 * 7 6 4 9 9 C 1.43242 * 109.97039 * 24.42347 * 8 7 6 10 10 S 1.65592 * 119.99946 * 180.02562 * 2 1 3 11 11 O 1.42103 * 106.40198 * 341.33803 * 10 2 1 12 12 O 1.42105 * 106.40317 * 208.42084 * 10 2 1 13 13 C 1.76200 * 107.22126 * 94.87576 * 10 2 1 14 14 C 1.38236 * 119.99831 * 85.03934 * 13 10 2 15 15 C 1.38234 * 120.00119 * 179.97438 * 14 13 10 16 16 C 1.38236 * 119.99634 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99587 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47025 * 89.99775 * 17 16 15 19 19 H 1.08000 * 119.99953 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99894 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99675 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00080 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46752 * 270.00214 * 22 20 18 24 24 H 1.48497 * 109.47026 * 30.00097 * 22 20 18 25 25 H 1.48496 * 109.46890 * 150.00349 * 22 20 18 26 26 C 1.38232 * 120.00307 * 0.27297 * 16 15 14 27 27 C 1.38226 * 120.00197 * 265.02008 * 13 10 2 28 28 H 1.08995 * 109.46778 * 270.00427 * 1 2 3 29 29 H 1.09004 * 109.47211 * 30.00048 * 1 2 3 30 30 H 1.08996 * 109.47009 * 149.99857 * 1 2 3 31 31 H 1.08998 * 109.46823 * 205.62913 * 3 2 1 32 32 H 1.09002 * 109.47279 * 325.62674 * 3 2 1 33 33 H 1.09007 * 111.12802 * 270.24567 * 6 4 3 34 34 H 1.09002 * 111.12457 * 34.40474 * 6 4 3 35 35 H 1.08994 * 110.30730 * 204.64170 * 7 6 4 36 36 H 1.09001 * 110.38806 * 82.51350 * 7 6 4 37 37 H 1.08994 * 109.83057 * 238.77599 * 9 8 7 38 38 H 1.09008 * 109.82979 * 117.80337 * 9 8 7 39 39 H 1.08004 * 119.99847 * 359.97438 * 14 13 10 40 40 H 1.08003 * 120.00084 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.46989 * 330.00016 * 17 16 15 42 42 H 1.08991 * 109.46999 * 209.99648 * 17 16 15 43 43 H 0.97000 * 119.99914 * 0.02562 * 21 20 18 44 44 H 1.07996 * 120.00203 * 179.72848 * 26 16 15 45 45 H 1.08007 * 120.00296 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3574 1.7655 1.4382 5 1 2.8737 1.0238 2.0478 6 6 3.0993 3.1293 1.4728 7 6 2.5265 3.7429 2.7752 8 8 1.1535 3.3228 2.8155 9 6 0.9864 2.1226 2.0517 10 16 2.2930 -1.4341 -0.0006 11 8 1.3751 -2.4275 0.4351 12 8 3.5320 -1.1825 0.6483 13 6 2.6777 -1.8136 -1.6777 14 6 3.8106 -1.2814 -2.2644 15 6 4.1128 -1.5795 -3.5800 16 6 3.2823 -2.4103 -4.3087 17 6 3.6120 -2.7357 -5.7427 18 6 4.4734 -3.9713 -5.7921 19 1 4.7537 -4.4711 -4.8767 20 6 4.9028 -4.4642 -7.0061 21 7 4.5611 -3.8558 -8.1208 22 14 5.9700 -5.9961 -7.0674 23 1 7.4011 -5.6053 -7.0009 24 1 5.6425 -6.8740 -5.9153 25 1 5.7147 -6.7267 -8.3348 26 6 2.1467 -2.9384 -3.7236 27 6 1.8470 -2.6438 -2.4066 28 1 -0.3633 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 3.1816 1.1201 -0.4445 32 1 1.6446 2.0075 -0.5802 33 1 4.1777 2.9882 1.5462 34 1 2.8428 3.7382 0.6059 35 1 2.5886 4.8305 2.7402 36 1 3.0644 3.3615 3.6432 37 1 0.2579 2.2878 1.2580 38 1 0.6502 1.3145 2.7015 39 1 4.4597 -0.6326 -1.6949 40 1 4.9981 -1.1640 -4.0382 41 1 4.1495 -1.8999 -6.1906 42 1 2.6900 -2.9133 -6.2962 43 1 4.0072 -3.0601 -8.0889 44 1 1.4955 -3.5839 -4.2942 45 1 0.9622 -3.0602 -1.9480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885041946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:54 Heat of formation + Delta-G solvation = -106.667667 kcal Electronic energy + Delta-G solvation = -27347.839734 eV Core-core repulsion = 23456.764611 eV Total energy + Delta-G solvation = -3891.075123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.89983 -38.94322 -37.30992 -36.74067 -35.85490 -34.04706 -32.75074 -31.56905 -30.71154 -29.76010 -27.77015 -27.13034 -24.62408 -23.57702 -22.74495 -22.47952 -21.19156 -21.15692 -19.06089 -17.86328 -17.56213 -17.12229 -16.95764 -16.35403 -16.23789 -15.16326 -15.10011 -15.02972 -14.41252 -14.34788 -13.97464 -13.85259 -13.77421 -13.49998 -13.35897 -13.23254 -13.02028 -12.67104 -12.38297 -12.33780 -12.09493 -11.97549 -11.84366 -11.73420 -11.67799 -11.48808 -11.23079 -11.10756 -10.93448 -10.89441 -10.60173 -10.27069 -10.08968 -9.85502 -9.39868 -9.28898 -8.71591 -8.52380 -8.34717 -6.54770 -4.27686 0.33255 1.20270 1.66389 2.82893 3.35610 3.38699 3.53324 3.54919 3.66416 3.95758 4.06413 4.22136 4.33077 4.42849 4.44296 4.59828 4.83729 4.88634 4.98746 5.03467 5.09023 5.14073 5.16974 5.22659 5.30905 5.33804 5.41100 5.46698 5.51288 5.55110 5.55533 5.65479 5.69195 5.76967 5.85976 6.10779 6.18303 6.22613 6.39857 6.64679 6.67491 6.70284 6.93080 7.25611 7.32746 7.89294 8.25653 8.65956 9.43467 10.84709 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023635 B = 0.002454 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.374362 B =11405.430725 C =11723.157505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.003 6.003 3 C 0.136 3.864 4 C -0.146 4.146 5 H 0.097 0.903 6 C -0.150 4.150 7 C 0.051 3.949 8 O -0.388 6.388 9 C 0.057 3.943 10 S 2.694 3.306 11 O -0.960 6.960 12 O -0.959 6.959 13 C -0.704 4.704 14 C -0.023 4.023 15 C -0.145 4.145 16 C 0.031 3.969 17 C 0.026 3.974 18 C -0.597 4.597 19 H 0.053 0.947 20 C 0.020 3.980 21 N -0.907 5.907 22 Si 1.074 2.926 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.282 1.282 26 C -0.145 4.145 27 C -0.022 4.022 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.025 0.975 42 H 0.026 0.974 43 H 0.269 0.731 44 H 0.128 0.872 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 14.471 17.864 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.840 5.840 3 C 0.010 3.990 4 C -0.167 4.167 5 H 0.115 0.885 6 C -0.188 4.188 7 C -0.025 4.025 8 O -0.307 6.307 9 C -0.019 4.019 10 S 2.787 3.213 11 O -0.951 6.951 12 O -0.949 6.949 13 C -0.793 4.793 14 C -0.043 4.043 15 C -0.164 4.164 16 C 0.031 3.969 17 C -0.010 4.010 18 C -0.635 4.635 19 H 0.071 0.929 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.901 3.099 23 H -0.212 1.212 24 H -0.213 1.213 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.042 4.042 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.146 0.854 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.335 13.061 17.678 22.875 hybrid contribution -0.536 0.942 0.102 1.089 sum -6.871 14.004 17.780 23.653 Atomic orbital electron populations 1.21587 0.78043 1.03581 1.02322 1.57559 1.15341 1.21260 1.89855 1.21262 0.97126 0.85306 0.95259 1.23291 0.96636 0.98384 0.98356 0.88469 1.23281 1.01407 0.95315 0.98833 1.23366 0.82405 0.99822 0.96945 1.88397 1.26889 1.42519 1.72913 1.23267 0.96778 0.87030 0.94872 1.01852 0.73011 0.72093 0.74340 1.93553 1.64223 1.56812 1.80464 1.93560 1.43559 1.84708 1.73097 1.30421 1.07539 1.15797 1.25514 1.20733 0.93230 0.95443 0.94876 1.21212 1.00549 1.00525 0.94066 1.20870 0.90243 0.87572 0.98239 1.18657 0.97530 0.97975 0.86856 1.21854 1.34769 1.11378 0.95532 0.92868 1.25928 0.97867 1.02817 0.91843 1.70777 1.34846 1.19906 1.28677 0.83468 0.75796 0.74833 0.75798 1.21218 1.21295 1.20770 1.21230 0.98657 1.01605 0.94874 1.20789 0.96776 0.92751 0.93864 0.92241 0.90752 0.90500 0.89435 0.89629 0.89288 0.89919 0.89691 0.92090 0.90935 0.91442 0.85404 0.85385 0.95651 0.95634 0.92001 0.85359 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 8.83 59.85 0.53 1.22 16 2 N -1.00 -9.70 3.13 -121.75 -0.38 -10.08 16 3 C 0.14 1.09 4.79 -4.04 -0.02 1.07 16 4 C -0.15 -1.19 3.26 -88.68 -0.29 -1.48 16 5 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16 6 C -0.15 -0.98 6.62 -24.49 -0.16 -1.14 16 7 C 0.05 0.37 7.78 38.18 0.30 0.67 16 8 O -0.39 -3.85 11.36 -35.23 -0.40 -4.25 16 9 C 0.06 0.48 6.15 37.88 0.23 0.71 16 10 S 2.69 36.33 5.59 -107.50 -0.60 35.73 16 11 O -0.96 -15.00 16.08 -57.17 -0.92 -15.92 16 12 O -0.96 -14.67 16.47 -57.17 -0.94 -15.62 16 13 C -0.70 -10.82 5.97 -39.59 -0.24 -11.05 16 14 C -0.02 -0.37 9.52 -39.58 -0.38 -0.74 16 15 C -0.14 -2.64 9.70 -39.58 -0.38 -3.03 16 16 C 0.03 0.64 5.07 -104.62 -0.53 0.11 16 17 C 0.03 0.64 4.42 -29.03 -0.13 0.51 16 18 C -0.60 -16.31 9.09 -34.44 -0.31 -16.63 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 21 N -0.91 -26.54 13.65 55.43 0.76 -25.78 16 22 Si 1.07 24.66 29.90 -169.99 -5.08 19.58 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 C -0.14 -2.67 9.70 -39.58 -0.38 -3.06 16 27 C -0.02 -0.36 9.53 -39.59 -0.38 -0.74 16 28 H 0.06 0.41 7.55 -51.93 -0.39 0.02 16 29 H 0.07 0.41 7.86 -51.93 -0.41 0.00 16 30 H 0.08 0.60 7.66 -51.93 -0.40 0.20 16 31 H 0.09 0.69 7.77 -51.93 -0.40 0.29 16 32 H 0.09 0.52 7.90 -51.93 -0.41 0.11 16 33 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.52 6.86 -51.93 -0.36 0.17 16 38 H 0.07 0.57 8.05 -51.92 -0.42 0.16 16 39 H 0.13 1.66 7.74 -52.48 -0.41 1.26 16 40 H 0.13 2.22 8.06 -52.48 -0.42 1.79 16 41 H 0.03 0.63 7.95 -51.93 -0.41 0.21 16 42 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 43 H 0.27 7.77 7.22 -40.82 -0.29 7.48 16 44 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 45 H 0.13 1.82 7.52 -52.48 -0.39 1.42 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -33.76 379.76 -10.94 -44.70 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.86 Total: -0.96 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: -2.24 Total: -33.12 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.38 Total: -35.86 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -2.26 Total: -35.78 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.58 kcal Atomic # 16 Polarization: 36.33 SS G_CDS: -0.60 Total: 35.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.76 -10.94 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885041946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.968 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds