Wall clock time and date at job start Tue Mar 31 2020 23:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99650 * 2 1 4 4 C 1.52999 * 109.47339 * 278.31340 * 3 2 1 5 5 H 1.08996 * 109.47442 * 54.28078 * 4 3 2 6 6 O 1.42907 * 109.46679 * 294.28418 * 4 3 2 7 7 C 1.52997 * 109.47283 * 174.28981 * 4 3 2 8 8 C 1.53002 * 117.49944 * 248.74605 * 7 4 3 9 9 C 1.52995 * 117.50123 * 180.08313 * 7 4 3 10 10 S 1.65595 * 120.00424 * 180.02562 * 2 1 3 11 11 O 1.42104 * 106.40608 * 162.12747 * 10 2 1 12 12 O 1.42098 * 106.40195 * 29.20230 * 10 2 1 13 13 C 1.76200 * 107.21727 * 275.66512 * 10 2 1 14 14 C 1.38240 * 120.00056 * 85.04521 * 13 10 2 15 15 C 1.38235 * 120.00138 * 180.02562 * 14 13 10 16 16 C 1.38235 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99688 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47052 * 90.00152 * 17 16 15 19 19 H 1.08000 * 120.00334 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99826 * 180.27734 * 18 17 16 21 21 N 1.31513 * 119.99793 * 359.72133 * 20 18 17 22 22 Si 1.86799 * 119.99926 * 179.72327 * 20 18 17 23 23 H 1.48503 * 109.47068 * 89.99337 * 22 20 18 24 24 H 1.48493 * 109.46889 * 209.99670 * 22 20 18 25 25 H 1.48504 * 109.46866 * 329.99762 * 22 20 18 26 26 C 1.38231 * 120.00187 * 0.25267 * 16 15 14 27 27 C 1.38229 * 120.00208 * 265.02713 * 13 10 2 28 28 H 1.08998 * 109.46651 * 269.99327 * 1 2 3 29 29 H 1.08997 * 109.47319 * 29.99714 * 1 2 3 30 30 H 1.08999 * 109.46754 * 150.00139 * 1 2 3 31 31 H 1.08997 * 109.47075 * 38.31104 * 3 2 1 32 32 H 1.09001 * 109.46906 * 158.31224 * 3 2 1 33 33 H 0.96693 * 114.00663 * 304.55926 * 6 4 3 34 34 H 1.09007 * 115.55040 * 34.41167 * 7 4 3 35 35 H 1.09003 * 117.49585 * 359.97438 * 8 7 4 36 36 H 1.08991 * 117.50237 * 145.01791 * 8 7 4 37 37 H 1.08998 * 117.50242 * 214.97715 * 9 7 4 38 38 H 1.09005 * 117.49593 * 0.02562 * 9 7 4 39 39 H 1.08000 * 119.99491 * 359.97438 * 14 13 10 40 40 H 1.08002 * 120.00016 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.47372 * 329.99541 * 17 16 15 42 42 H 1.09003 * 109.46974 * 209.99698 * 17 16 15 43 43 H 0.96999 * 119.99866 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.99775 * 179.72812 * 26 16 15 45 45 H 1.07999 * 120.00137 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2718 1.8148 -1.4273 5 1 1.2667 1.8818 -1.8436 6 8 3.0631 0.9381 -2.2320 7 6 2.9101 3.2052 -1.4089 8 6 2.0145 4.3982 -1.7488 9 6 3.0728 3.9256 -2.7488 10 16 2.2931 -1.4340 -0.0006 11 8 3.6173 -1.1326 -0.4189 12 8 1.4633 -2.3762 -0.6661 13 6 2.4100 -1.9695 1.6739 14 6 1.3760 -2.6890 2.2434 15 6 1.4675 -3.1087 3.5573 16 6 2.5928 -2.8084 4.3020 17 6 2.6922 -3.2654 5.7346 18 6 3.3323 -4.6288 5.7836 19 1 3.6362 -5.1159 4.8689 20 6 3.5241 -5.2571 6.9959 21 7 3.1536 -4.6642 8.1097 22 14 4.3104 -6.9505 7.0561 23 1 5.7836 -6.8082 7.1780 24 1 3.7866 -7.6980 8.2273 25 1 3.9861 -7.6913 5.8105 26 6 3.6242 -2.0839 3.7344 27 6 3.5358 -1.6705 2.4182 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6807 1.9866 0.6371 32 1 3.2061 1.1060 0.3798 33 1 3.9498 0.7759 -1.8820 34 1 3.6863 3.3563 -0.6587 35 1 0.9706 4.1924 -1.9860 36 1 2.2017 5.3342 -1.2227 37 1 3.9558 4.5510 -2.8800 38 1 2.7247 3.4092 -3.6434 39 1 0.4964 -2.9226 1.6618 40 1 0.6595 -3.6705 4.0023 41 1 1.6942 -3.3166 6.1698 42 1 3.2994 -2.5585 6.3001 43 1 3.2889 -5.1060 8.9626 44 1 4.5014 -1.8456 4.3176 45 1 4.3439 -1.1090 1.9732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885077354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:58 Heat of formation + Delta-G solvation = -81.659259 kcal Electronic energy + Delta-G solvation = -27245.950264 eV Core-core repulsion = 23355.959587 eV Total energy + Delta-G solvation = -3889.990677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.12364 -38.81458 -37.16999 -36.41260 -35.71189 -35.18025 -33.69119 -31.57049 -30.60036 -29.74662 -27.44152 -26.42249 -23.76238 -23.34358 -22.66887 -22.35330 -21.17153 -20.85554 -19.00265 -17.97979 -17.35950 -16.97782 -16.46519 -16.32779 -15.77936 -15.32133 -15.08349 -14.98953 -14.53140 -14.38895 -14.09034 -13.92521 -13.66497 -13.15051 -13.08950 -12.98757 -12.76902 -12.38821 -12.23740 -11.94781 -11.90210 -11.75743 -11.69453 -11.55990 -11.50306 -11.44936 -10.94876 -10.92383 -10.87578 -10.64749 -10.51651 -10.50076 -10.37694 -9.76525 -9.67284 -9.11260 -8.61191 -8.55332 -8.39395 -6.18667 -4.23659 0.45885 1.31825 1.77290 2.95165 3.23358 3.29928 3.34401 3.35268 3.81400 4.04002 4.16723 4.25016 4.35884 4.41094 4.49188 4.54917 4.67797 4.90043 4.95375 4.99730 5.14018 5.20188 5.20781 5.27004 5.28988 5.37310 5.45086 5.54449 5.59476 5.70243 5.72715 5.76901 5.78636 5.89210 5.91116 6.23166 6.30439 6.33294 6.51411 6.81740 6.88678 7.27372 7.41276 7.55880 7.57012 7.76479 8.11675 8.81122 9.41352 10.91365 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.002432 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.368030 B =11511.381927 C =11735.185332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.998 5.998 3 C 0.094 3.906 4 C 0.119 3.881 5 H 0.100 0.900 6 O -0.556 6.556 7 C -0.193 4.193 8 C -0.175 4.175 9 C -0.164 4.164 10 S 2.702 3.298 11 O -0.960 6.960 12 O -0.962 6.962 13 C -0.707 4.707 14 C -0.024 4.024 15 C -0.145 4.145 16 C 0.026 3.974 17 C 0.039 3.961 18 C -0.517 4.517 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.146 4.146 27 C -0.024 4.024 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.385 0.615 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.129 0.871 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 17.608 -17.034 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.834 5.834 3 C -0.032 4.032 4 C 0.058 3.942 5 H 0.118 0.882 6 O -0.363 6.363 7 C -0.212 4.212 8 C -0.212 4.212 9 C -0.201 4.201 10 S 2.795 3.205 11 O -0.951 6.951 12 O -0.952 6.952 13 C -0.796 4.796 14 C -0.044 4.044 15 C -0.164 4.164 16 C 0.026 3.974 17 C 0.003 3.997 18 C -0.555 4.555 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.165 4.165 27 C -0.044 4.044 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.235 0.765 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.449 17.160 -17.937 25.219 hybrid contribution 0.799 -0.835 1.465 1.866 sum -3.650 16.325 -16.472 23.477 Atomic orbital electron populations 1.21595 0.78336 1.04111 1.02219 1.57366 1.15227 1.20923 1.89911 1.22031 0.97796 0.85849 0.97558 1.21902 0.95063 0.86234 0.91042 0.88225 1.86543 1.30780 1.67212 1.51790 1.23019 1.03728 0.93696 1.00796 1.22971 0.96618 0.97834 1.03747 1.22854 1.00924 1.02852 0.93505 1.01569 0.72903 0.72053 0.73979 1.93479 1.36653 1.84010 1.80924 1.93538 1.68959 1.60190 1.72534 1.30481 1.04309 1.19169 1.25645 1.20751 0.95896 0.92645 0.95069 1.21248 0.99453 1.01819 0.93892 1.21117 0.90689 0.86852 0.98789 1.18539 0.98808 0.96907 0.85480 1.20969 1.40545 1.01042 0.92992 0.92287 1.25009 0.95433 0.98218 0.95509 1.69945 1.46864 1.38366 0.97809 0.86475 0.79525 0.83598 0.77797 1.20429 1.21016 1.19681 1.21254 0.99766 1.00576 0.94869 1.20772 0.94594 0.95182 0.93846 0.92374 0.90807 0.89848 0.89292 0.89043 0.76521 0.87307 0.88672 0.88629 0.88757 0.88331 0.85492 0.85327 0.94707 0.94726 0.92621 0.85341 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.69 59.85 0.64 1.34 16 2 N -1.00 -10.44 3.15 -121.76 -0.38 -10.82 16 3 C 0.09 0.79 5.00 -4.04 -0.02 0.77 16 4 C 0.12 1.00 3.38 -26.73 -0.09 0.91 16 5 H 0.10 0.82 7.62 -51.93 -0.40 0.42 16 6 O -0.56 -6.15 12.48 -46.25 -0.58 -6.72 16 7 C -0.19 -1.33 5.38 -90.62 -0.49 -1.82 16 8 C -0.17 -1.04 10.18 -26.69 -0.27 -1.31 16 9 C -0.16 -1.12 10.16 -26.69 -0.27 -1.39 16 10 S 2.70 38.29 5.66 -107.50 -0.61 37.68 16 11 O -0.96 -14.44 14.14 -62.85 -0.89 -15.33 16 12 O -0.96 -16.21 16.14 -57.17 -0.92 -17.13 16 13 C -0.71 -11.22 5.97 -39.58 -0.24 -11.46 16 14 C -0.02 -0.40 9.52 -39.58 -0.38 -0.77 16 15 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 16 C 0.03 0.54 5.07 -104.62 -0.53 0.00 16 17 C 0.04 0.96 5.10 -29.04 -0.15 0.81 16 18 C -0.52 -14.02 9.09 -34.44 -0.31 -14.34 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16 27 C -0.02 -0.40 9.53 -39.58 -0.38 -0.77 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 30 H 0.08 0.76 7.08 -51.93 -0.37 0.40 16 31 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.09 0.75 7.33 -51.93 -0.38 0.37 16 33 H 0.39 3.81 8.05 45.56 0.37 4.17 16 34 H 0.11 0.67 8.11 -51.92 -0.42 0.25 16 35 H 0.09 0.52 8.05 -51.93 -0.42 0.10 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.13 1.78 7.74 -52.49 -0.41 1.37 16 40 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 45 H 0.13 1.77 7.51 -52.49 -0.39 1.37 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -32.85 387.96 -11.33 -44.18 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.16 Total: 3.56 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -3.35 Total: -32.62 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.35 Total: -35.56 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -2.39 Total: -39.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 38.29 SS G_CDS: -0.61 Total: 37.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.85 -11.33 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885077354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.481 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds