Wall clock time and date at job start Tue Mar 31 2020 23:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99650 * 2 1 4 4 C 1.52999 * 109.47339 * 278.31340 * 3 2 1 5 5 H 1.08996 * 109.47442 * 54.28078 * 4 3 2 6 6 O 1.42907 * 109.46679 * 294.28418 * 4 3 2 7 7 C 1.52997 * 109.47283 * 174.28981 * 4 3 2 8 8 C 1.53002 * 117.49944 * 248.74605 * 7 4 3 9 9 C 1.52995 * 117.50123 * 180.08313 * 7 4 3 10 10 S 1.65595 * 120.00424 * 180.02562 * 2 1 3 11 11 O 1.42104 * 106.40608 * 162.12747 * 10 2 1 12 12 O 1.42098 * 106.40195 * 29.20230 * 10 2 1 13 13 C 1.76200 * 107.21727 * 275.66512 * 10 2 1 14 14 C 1.38240 * 120.00056 * 85.04521 * 13 10 2 15 15 C 1.38235 * 120.00138 * 180.02562 * 14 13 10 16 16 C 1.38235 * 119.99752 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99688 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47052 * 90.00152 * 17 16 15 19 19 H 1.08000 * 120.00334 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99826 * 180.27734 * 18 17 16 21 21 N 1.31513 * 119.99793 * 359.72133 * 20 18 17 22 22 Si 1.86799 * 119.99926 * 179.72327 * 20 18 17 23 23 H 1.48503 * 109.47068 * 89.99337 * 22 20 18 24 24 H 1.48493 * 109.46889 * 209.99670 * 22 20 18 25 25 H 1.48504 * 109.46866 * 329.99762 * 22 20 18 26 26 C 1.38231 * 120.00187 * 0.25267 * 16 15 14 27 27 C 1.38229 * 120.00208 * 265.02713 * 13 10 2 28 28 H 1.08998 * 109.46651 * 269.99327 * 1 2 3 29 29 H 1.08997 * 109.47319 * 29.99714 * 1 2 3 30 30 H 1.08999 * 109.46754 * 150.00139 * 1 2 3 31 31 H 1.08997 * 109.47075 * 38.31104 * 3 2 1 32 32 H 1.09001 * 109.46906 * 158.31224 * 3 2 1 33 33 H 0.96693 * 114.00663 * 304.55926 * 6 4 3 34 34 H 1.09007 * 115.55040 * 34.41167 * 7 4 3 35 35 H 1.09003 * 117.49585 * 359.97438 * 8 7 4 36 36 H 1.08991 * 117.50237 * 145.01791 * 8 7 4 37 37 H 1.08998 * 117.50242 * 214.97715 * 9 7 4 38 38 H 1.09005 * 117.49593 * 0.02562 * 9 7 4 39 39 H 1.08000 * 119.99491 * 359.97438 * 14 13 10 40 40 H 1.08002 * 120.00016 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.47372 * 329.99541 * 17 16 15 42 42 H 1.09003 * 109.46974 * 209.99698 * 17 16 15 43 43 H 0.96999 * 119.99866 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.99775 * 179.72812 * 26 16 15 45 45 H 1.07999 * 120.00137 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2718 1.8148 -1.4273 5 1 1.2667 1.8818 -1.8436 6 8 3.0631 0.9381 -2.2320 7 6 2.9101 3.2052 -1.4089 8 6 2.0145 4.3982 -1.7488 9 6 3.0728 3.9256 -2.7488 10 16 2.2931 -1.4340 -0.0006 11 8 3.6173 -1.1326 -0.4189 12 8 1.4633 -2.3762 -0.6661 13 6 2.4100 -1.9695 1.6739 14 6 1.3760 -2.6890 2.2434 15 6 1.4675 -3.1087 3.5573 16 6 2.5928 -2.8084 4.3020 17 6 2.6922 -3.2654 5.7346 18 6 3.3323 -4.6288 5.7836 19 1 3.6362 -5.1159 4.8689 20 6 3.5241 -5.2571 6.9959 21 7 3.1536 -4.6642 8.1097 22 14 4.3104 -6.9505 7.0561 23 1 5.7836 -6.8082 7.1780 24 1 3.7866 -7.6980 8.2273 25 1 3.9861 -7.6913 5.8105 26 6 3.6242 -2.0839 3.7344 27 6 3.5358 -1.6705 2.4182 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6807 1.9866 0.6371 32 1 3.2061 1.1060 0.3798 33 1 3.9498 0.7759 -1.8820 34 1 3.6863 3.3563 -0.6587 35 1 0.9706 4.1924 -1.9860 36 1 2.2017 5.3342 -1.2227 37 1 3.9558 4.5510 -2.8800 38 1 2.7247 3.4092 -3.6434 39 1 0.4964 -2.9226 1.6618 40 1 0.6595 -3.6705 4.0023 41 1 1.6942 -3.3166 6.1698 42 1 3.2994 -2.5585 6.3001 43 1 3.2889 -5.1060 8.9626 44 1 4.5014 -1.8456 4.3176 45 1 4.3439 -1.1090 1.9732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885077354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:57 Heat of formation + Delta-G solvation = -102.905868 kcal Electronic energy + Delta-G solvation = -27246.871586 eV Core-core repulsion = 23355.959587 eV Total energy + Delta-G solvation = -3890.911999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.23940 -39.75881 -38.34752 -37.08821 -36.88008 -35.92560 -35.60164 -33.32500 -31.97599 -30.41775 -29.24860 -27.12067 -25.59730 -24.07176 -23.72163 -23.13963 -22.42740 -21.74749 -20.07611 -19.04275 -18.61308 -18.42656 -17.72118 -17.09008 -16.90145 -16.61671 -16.19389 -15.99751 -15.90773 -15.50848 -15.20870 -14.84969 -14.64776 -14.48072 -14.41913 -13.98654 -13.78864 -13.63312 -13.41718 -13.39131 -13.35331 -13.14306 -12.68920 -12.66395 -12.59105 -12.39050 -12.35376 -12.18988 -12.05690 -12.03034 -11.68426 -11.43138 -11.41027 -11.16904 -10.99879 -10.66344 -10.01319 -9.97811 -9.83316 -8.28211 -6.40861 -0.65761 -0.06934 0.38188 1.37642 1.37993 1.49492 1.95714 2.34201 2.61063 2.78802 2.84813 3.04397 3.25973 3.54189 3.68036 3.81829 3.87971 3.95810 4.00051 4.14812 4.15881 4.28687 4.35562 4.43866 4.46350 4.48316 4.66739 4.77692 4.80334 4.83897 4.85541 4.89571 4.99403 5.07340 5.09096 5.14822 5.23235 5.24945 5.30463 5.32014 5.34519 5.58704 5.66030 5.84952 5.91347 6.08907 6.70822 6.85707 7.28174 8.81836 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.002432 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.368030 B =11511.381927 C =11735.185332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.990 5.990 3 C 0.087 3.913 4 C 0.117 3.883 5 H 0.102 0.898 6 O -0.578 6.578 7 C -0.195 4.195 8 C -0.164 4.164 9 C -0.175 4.175 10 S 2.719 3.281 11 O -0.969 6.969 12 O -0.988 6.988 13 C -0.704 4.704 14 C -0.022 4.022 15 C -0.155 4.155 16 C -0.005 4.005 17 C 0.049 3.951 18 C -0.534 4.534 19 H 0.053 0.947 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.155 4.155 27 C -0.020 4.020 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.387 0.613 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.130 0.870 41 H 0.013 0.987 42 H 0.014 0.986 43 H 0.268 0.732 44 H 0.131 0.869 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 18.741 -18.540 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.829 5.829 3 C -0.038 4.038 4 C 0.057 3.943 5 H 0.120 0.880 6 O -0.386 6.386 7 C -0.214 4.214 8 C -0.201 4.201 9 C -0.212 4.212 10 S 2.810 3.190 11 O -0.959 6.959 12 O -0.978 6.978 13 C -0.791 4.791 14 C -0.041 4.041 15 C -0.174 4.174 16 C -0.005 4.005 17 C 0.012 3.988 18 C -0.572 4.572 19 H 0.071 0.929 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.174 4.174 27 C -0.039 4.039 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.237 0.763 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.170 0.830 40 H 0.148 0.852 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.555 18.287 -19.424 27.064 hybrid contribution 0.782 -1.051 1.809 2.233 sum -3.773 17.236 -17.615 24.932 Atomic orbital electron populations 1.21861 0.76856 1.05125 1.03422 1.57126 1.16113 1.20265 1.89385 1.22301 0.98219 0.85189 0.98117 1.21998 0.94992 0.86639 0.90685 0.87985 1.86522 1.31178 1.68023 1.52840 1.22969 1.04345 0.93117 1.01017 1.23057 0.96607 0.97747 1.02699 1.22883 1.01804 1.03265 0.93239 1.01044 0.72620 0.72444 0.72900 1.93464 1.37524 1.84284 1.80610 1.93508 1.69553 1.62053 1.72693 1.30976 1.03642 1.17819 1.26626 1.21007 0.97010 0.91902 0.94191 1.21309 0.98950 1.02237 0.94908 1.20827 0.92873 0.89620 0.97165 1.18263 0.96801 0.95679 0.88095 1.21283 1.40632 1.02358 0.92879 0.92893 1.25864 0.95910 1.02041 0.95143 1.70050 1.47953 1.40036 0.98369 0.85464 0.78815 0.78982 0.77941 1.19602 1.20274 1.19311 1.21328 0.99334 1.00610 0.96082 1.21049 0.95452 0.94597 0.92770 0.91125 0.88032 0.90709 0.86591 0.88734 0.76286 0.86472 0.88118 0.87506 0.88144 0.89433 0.82975 0.85235 0.96824 0.96758 0.92354 0.85101 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.69 127.77 1.37 2.37 16 2 N -0.99 -17.99 3.15 -539.13 -1.70 -19.69 16 3 C 0.09 1.19 5.00 86.38 0.43 1.62 16 4 C 0.12 1.70 3.38 30.59 0.10 1.80 16 5 H 0.10 1.40 7.62 -2.39 -0.02 1.39 16 6 O -0.58 -11.87 12.48 -138.45 -1.73 -13.60 16 7 C -0.20 -2.21 5.38 -10.80 -0.06 -2.27 16 8 C -0.16 -1.50 10.18 30.62 0.31 -1.19 16 9 C -0.17 -2.07 10.16 30.62 0.31 -1.76 16 10 S 2.72 71.44 5.66 -56.49 -0.32 71.12 16 11 O -0.97 -27.14 14.14 -122.57 -1.73 -28.88 16 12 O -0.99 -31.63 16.14 -128.00 -2.07 -33.70 16 13 C -0.70 -21.10 5.97 22.27 0.13 -20.97 16 14 C -0.02 -0.70 9.52 22.27 0.21 -0.48 16 15 C -0.16 -5.81 9.70 22.27 0.22 -5.60 16 16 C 0.00 -0.19 5.07 -19.87 -0.10 -0.29 16 17 C 0.05 2.48 5.10 29.10 0.15 2.63 16 18 C -0.53 -29.74 9.09 25.60 0.23 -29.50 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C 0.01 0.53 5.46 84.66 0.46 0.99 16 21 N -0.92 -54.06 13.29 21.45 0.28 -53.77 16 22 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 C -0.15 -5.72 9.70 22.27 0.22 -5.50 16 27 C -0.02 -0.61 9.53 22.27 0.21 -0.39 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.87 7.79 -2.39 -0.02 0.85 16 30 H 0.07 1.20 7.08 -2.39 -0.02 1.19 16 31 H 0.12 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.09 1.27 7.33 -2.39 -0.02 1.25 16 33 H 0.39 7.16 8.05 -74.06 -0.60 6.56 16 34 H 0.12 1.13 8.11 -2.38 -0.02 1.11 16 35 H 0.10 0.81 8.05 -2.39 -0.02 0.79 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.15 3.97 7.74 -2.91 -0.02 3.94 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.01 0.73 8.09 -2.39 -0.02 0.71 16 42 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 43 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 45 H 0.16 3.91 7.51 -2.91 -0.02 3.89 16 Total: -1.00 -71.32 387.96 -0.64 -71.96 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.40 Total: 19.48 kcal Atomic # 6 Polarization: -62.75 SS G_CDS: 4.20 Total: -58.56 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.41 Total: -73.47 kcal Atomic # 8 Polarization: -70.64 SS G_CDS: -5.53 Total: -76.17 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 71.44 SS G_CDS: -0.32 Total: 71.12 kcal Total: -71.32 -0.64 -71.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885077354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.945 kcal (2) G-P(sol) polarization free energy of solvation -71.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds