Wall clock time and date at job start Tue Mar 31 2020 22:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 O 1.42906 * 109.46748 * 239.99822 * 2 1 3 5 5 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 6 6 H 1.09005 * 110.64361 * 61.68813 * 5 2 1 7 7 C 1.55151 * 110.72022 * 298.54713 * 5 2 1 8 8 C 1.54917 * 101.57987 * 206.13603 * 7 5 2 9 9 N 1.47425 * 104.83318 * 37.00579 * 8 7 5 10 10 S 1.65598 * 125.64727 * 155.90786 * 9 8 7 11 11 O 1.42102 * 106.40323 * 203.51993 * 10 9 8 12 12 O 1.42102 * 106.40233 * 336.43688 * 10 9 8 13 13 C 1.76197 * 107.21742 * 89.97740 * 10 9 8 14 14 C 1.38234 * 119.99820 * 269.72435 * 13 10 9 15 15 C 1.38237 * 119.99513 * 179.79114 * 14 13 10 16 16 C 1.38233 * 120.00500 * 0.43946 * 15 14 13 17 17 C 1.50691 * 120.00318 * 179.83660 * 16 15 14 18 18 C 1.50702 * 109.47368 * 269.98136 * 17 16 15 19 19 H 1.08003 * 119.99633 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00447 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99836 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47243 * 89.99751 * 22 20 18 24 24 H 1.48502 * 109.46776 * 209.99761 * 22 20 18 25 25 H 1.48497 * 109.47139 * 329.99778 * 22 20 18 26 26 C 1.38233 * 119.99551 * 359.81474 * 16 15 14 27 27 C 1.38236 * 119.99801 * 89.99970 * 13 10 9 28 28 C 1.47021 * 108.70327 * 335.87494 * 9 8 7 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96693 * 114.00047 * 300.00454 * 4 2 1 33 33 H 1.09000 * 111.00737 * 324.20378 * 7 5 2 34 34 H 1.09003 * 111.00620 * 88.02622 * 7 5 2 35 35 H 1.08999 * 110.36726 * 155.85174 * 8 7 5 36 36 H 1.08999 * 110.36230 * 278.17008 * 8 7 5 37 37 H 1.08000 * 120.00313 * 359.97438 * 14 13 10 38 38 H 1.08006 * 120.00014 * 180.27798 * 15 14 13 39 39 H 1.09000 * 109.47243 * 29.97887 * 17 16 15 40 40 H 1.09001 * 109.47300 * 149.98241 * 17 16 15 41 41 H 0.97001 * 120.00193 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.00166 * 179.97438 * 26 16 15 43 43 H 1.07992 * 120.00151 * 359.97438 * 27 13 10 44 44 H 1.08996 * 109.88299 * 241.64062 * 28 9 8 45 45 H 1.08993 * 109.88396 * 120.47450 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.7121 -1.7608 1.2536 7 6 1.5692 0.0084 2.5350 8 6 2.6705 -0.3999 3.5452 9 7 3.9168 -0.4180 2.7579 10 16 5.4456 -0.2318 3.3666 11 8 6.2517 0.2317 2.2920 12 8 5.3062 0.4719 4.5932 13 6 6.0418 -1.8376 3.7793 14 6 5.8278 -2.3501 5.0452 15 6 6.2918 -3.6118 5.3675 16 6 6.9777 -4.3572 4.4270 17 6 7.4868 -5.7310 4.7796 18 6 8.8814 -5.6215 5.3401 19 1 9.3522 -4.6538 5.4314 20 6 9.5568 -6.7567 5.7353 21 7 8.9837 -7.9351 5.6237 22 14 11.2857 -6.6209 6.4294 23 1 11.2156 -6.4501 7.9028 24 1 12.0457 -7.8560 6.1098 25 1 11.9701 -5.4487 5.8272 26 6 7.1963 -3.8426 3.1628 27 6 6.7286 -2.5827 2.8389 28 6 3.5777 -0.6296 1.3431 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7209 -1.5952 -1.2329 33 1 1.5547 1.0884 2.3883 34 1 0.5919 -0.3538 2.8541 35 1 2.7396 0.3339 4.3482 36 1 2.4641 -1.3900 3.9516 37 1 5.2955 -1.7661 5.7813 38 1 6.1207 -4.0140 6.3552 39 1 6.8304 -6.1817 5.5241 40 1 7.5027 -6.3534 3.8849 41 1 9.4586 -8.7338 5.9021 42 1 7.7326 -4.4247 2.4280 43 1 6.8993 -2.1806 1.8513 44 1 4.0267 -1.5575 0.9890 45 1 3.9361 0.2093 0.7465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885093627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:10 Heat of formation + Delta-G solvation = -112.850254 kcal Electronic energy + Delta-G solvation = -27194.499242 eV Core-core repulsion = 23303.156022 eV Total energy + Delta-G solvation = -3891.343220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.58231 -38.80365 -37.17264 -36.97230 -35.77358 -33.68703 -32.50112 -31.56366 -30.58393 -29.74628 -29.03009 -27.43183 -23.75538 -23.50579 -22.66810 -22.33787 -20.98954 -20.82059 -19.03845 -17.98593 -17.41666 -17.00323 -16.46339 -16.34194 -15.59378 -15.42616 -15.07751 -14.57390 -14.50234 -14.37710 -13.99942 -13.78027 -13.48433 -13.16844 -13.11544 -13.05538 -12.80368 -12.55510 -12.24170 -12.23193 -12.07341 -11.96024 -11.72153 -11.65966 -11.62738 -11.49716 -11.18219 -11.00243 -10.96131 -10.91864 -10.52980 -10.49127 -10.31048 -9.76688 -9.66992 -9.16805 -8.59850 -8.54753 -8.38750 -6.18128 -4.23102 0.42175 1.32731 1.78771 2.99825 3.23762 3.30280 3.34882 3.75938 3.78403 4.06503 4.14785 4.21877 4.26599 4.37075 4.56566 4.75729 4.80097 4.86572 5.03147 5.12559 5.15842 5.21620 5.23475 5.27929 5.30793 5.43164 5.50465 5.57932 5.66908 5.68419 5.71501 5.76071 5.86533 5.90435 5.94995 6.22190 6.24296 6.32516 6.52001 6.83001 6.89660 7.26213 7.28120 7.42263 7.57818 7.77013 8.12270 8.81646 9.41901 10.91929 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002540 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.731534 B =11018.865491 C =11530.173157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.111 3.889 3 H 0.102 0.898 4 O -0.561 6.561 5 C -0.130 4.130 6 H 0.089 0.911 7 C -0.121 4.121 8 C 0.115 3.885 9 N -1.015 6.015 10 S 2.711 3.289 11 O -0.959 6.959 12 O -0.961 6.961 13 C -0.705 4.705 14 C -0.023 4.023 15 C -0.146 4.146 16 C 0.026 3.974 17 C 0.040 3.960 18 C -0.517 4.517 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.145 4.145 27 C -0.023 4.023 28 C 0.130 3.870 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.376 0.624 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.384 14.119 -9.069 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.051 3.949 3 H 0.119 0.881 4 O -0.367 6.367 5 C -0.151 4.151 6 H 0.108 0.892 7 C -0.160 4.160 8 C -0.011 4.011 9 N -0.852 5.852 10 S 2.806 3.194 11 O -0.950 6.950 12 O -0.951 6.951 13 C -0.794 4.794 14 C -0.043 4.043 15 C -0.165 4.165 16 C 0.026 3.974 17 C 0.003 3.997 18 C -0.555 4.555 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.164 4.164 27 C -0.043 4.043 28 C 0.005 3.995 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.223 0.777 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.546 15.326 -9.023 25.695 hybrid contribution 0.747 -1.507 0.728 1.833 sum -17.798 13.819 -8.295 24.011 Atomic orbital electron populations 1.22513 0.96113 1.02716 1.02940 1.21956 0.92964 0.96610 0.83357 0.88064 1.86625 1.77208 1.29222 1.43596 1.23020 0.95121 1.01077 0.95842 0.89229 1.22793 0.98298 1.01050 0.93898 1.22055 0.82668 1.01898 0.94436 1.58719 1.21742 1.89272 1.15516 1.01198 0.71101 0.74171 0.72903 1.93555 1.66298 1.79507 1.55608 1.93545 1.85620 1.70885 1.45097 1.30407 1.20097 1.25452 1.03465 1.20763 0.95057 0.94982 0.93479 1.21245 1.00551 0.94437 1.00241 1.21115 0.86778 0.97937 0.91567 1.18535 0.96518 0.86609 0.98054 1.20970 0.98622 0.93454 1.42489 0.92294 1.25004 0.98444 0.95183 0.95524 1.69943 1.37885 0.97938 1.47229 0.86474 0.83805 0.77704 0.79405 1.20438 1.21012 1.19688 1.21249 1.01794 0.95719 0.97670 1.20776 0.92521 0.93498 0.97459 1.21665 0.94967 1.02035 0.80859 0.91253 0.91745 0.92189 0.77704 0.90239 0.89664 0.89659 0.91252 0.85340 0.85345 0.94732 0.94715 0.92623 0.85327 0.85317 0.91293 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.81 9.33 37.16 0.35 -0.47 16 2 C 0.11 0.66 2.98 -26.73 -0.08 0.58 16 3 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 4 O -0.56 -4.11 13.15 -35.23 -0.46 -4.57 16 5 C -0.13 -0.83 2.71 -88.79 -0.24 -1.07 16 6 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 7 C -0.12 -0.71 5.45 -24.58 -0.13 -0.84 16 8 C 0.11 0.97 7.10 -2.52 -0.02 0.95 16 9 N -1.01 -11.14 3.70 -111.42 -0.41 -11.55 16 10 S 2.71 39.67 5.94 -107.50 -0.64 39.03 16 11 O -0.96 -16.23 16.87 -57.17 -0.96 -17.20 16 12 O -0.96 -15.85 16.60 -57.17 -0.95 -16.80 16 13 C -0.70 -11.45 5.97 -39.58 -0.24 -11.69 16 14 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 15 C -0.15 -2.73 9.70 -39.58 -0.38 -3.12 16 16 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 17 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 18 C -0.52 -14.09 9.09 -34.44 -0.31 -14.41 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 22 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.15 -2.74 9.70 -39.58 -0.38 -3.13 16 27 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 28 C 0.13 1.23 6.41 -3.06 -0.02 1.21 16 29 H 0.07 0.25 7.30 -51.93 -0.38 -0.13 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.38 1.47 9.04 45.56 0.41 1.88 16 33 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 34 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 35 H 0.09 0.72 7.78 -51.93 -0.40 0.31 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.13 1.83 7.61 -52.49 -0.40 1.43 16 38 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.13 2.30 8.06 -52.48 -0.42 1.87 16 43 H 0.13 1.88 7.62 -52.49 -0.40 1.48 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -33.94 383.96 -11.09 -45.03 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.17 Total: 0.00 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: -2.99 Total: -31.08 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.32 Total: -36.38 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -2.38 Total: -38.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 39.67 SS G_CDS: -0.64 Total: 39.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.94 -11.09 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885093627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.821 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds