Wall clock time and date at job start Tue Mar 31 2020 22:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47176 * 2 1 4 4 O 1.42902 * 109.47355 * 239.99679 * 2 1 3 5 5 C 1.53001 * 109.46784 * 120.00132 * 2 1 3 6 6 H 1.09000 * 110.91473 * 308.90404 * 5 2 1 7 7 C 1.55156 * 111.00417 * 72.80274 * 5 2 1 8 8 C 1.54341 * 103.01928 * 153.38097 * 7 5 2 9 9 N 1.47027 * 107.26425 * 338.14275 * 8 7 5 10 10 S 1.65597 * 125.64849 * 178.84966 * 9 8 7 11 11 O 1.42097 * 106.40432 * 156.15047 * 10 9 8 12 12 O 1.42106 * 106.39900 * 23.23177 * 10 9 8 13 13 C 1.76202 * 107.21892 * 269.69274 * 10 9 8 14 14 C 1.38230 * 120.00032 * 89.99757 * 13 10 9 15 15 C 1.38236 * 120.00151 * 179.97438 * 14 13 10 16 16 C 1.38233 * 119.99565 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99980 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46869 * 90.00014 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.38233 * 120.00375 * 0.27512 * 16 15 14 27 27 C 1.38234 * 119.99710 * 269.97635 * 13 10 9 28 28 C 1.47423 * 108.70274 * 358.58137 * 9 8 7 29 29 H 1.08992 * 109.47337 * 300.00148 * 1 2 3 30 30 H 1.09002 * 109.46673 * 60.00082 * 1 2 3 31 31 H 1.09005 * 109.47365 * 179.97438 * 1 2 3 32 32 H 0.96703 * 114.00318 * 300.00557 * 4 2 1 33 33 H 1.08997 * 110.72080 * 271.93731 * 7 5 2 34 34 H 1.09000 * 110.72231 * 35.04163 * 7 5 2 35 35 H 1.08996 * 109.99382 * 218.66710 * 8 7 5 36 36 H 1.08997 * 109.77803 * 97.49519 * 8 7 5 37 37 H 1.08003 * 120.00235 * 359.97438 * 14 13 10 38 38 H 1.08000 * 120.00222 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.47210 * 330.00307 * 17 16 15 40 40 H 1.08994 * 109.47551 * 209.99960 * 17 16 15 41 41 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 42 42 H 1.08005 * 120.00620 * 179.72269 * 26 16 15 43 43 H 1.08002 * 119.99959 * 0.02562 * 27 13 10 44 44 H 1.09001 * 110.36534 * 143.19159 * 28 9 8 45 45 H 1.08995 * 110.37204 * 265.52140 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7213 1.2493 6 1 1.5667 -0.3251 2.1477 7 6 1.8215 -2.2532 1.1351 8 6 2.9320 -2.8310 2.0379 9 7 3.9757 -1.8024 2.1584 10 16 5.3652 -1.9371 3.0491 11 8 6.3004 -1.0360 2.4725 12 8 5.6148 -3.3284 3.1952 13 6 5.0121 -1.3229 4.6625 14 6 4.5453 -2.1799 5.6414 15 6 4.2688 -1.6982 6.9073 16 6 4.4598 -0.3596 7.1942 17 6 4.1578 0.1658 8.5741 18 6 5.3932 0.0652 9.4313 19 1 6.3059 -0.3384 9.0181 20 6 5.3602 0.4942 10.7413 21 7 4.2490 0.9859 11.2443 22 14 6.8936 0.3766 11.8014 23 1 7.9821 1.1796 11.1884 24 1 6.5975 0.8987 13.1597 25 1 7.3203 -1.0425 11.8993 26 6 4.9217 0.4985 6.2138 27 6 5.2025 0.0159 4.9493 28 6 3.5833 -0.6338 1.3498 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7211 -1.5953 -1.2329 33 1 0.8354 -2.5309 1.5071 34 1 1.9513 -2.5855 0.1051 35 1 3.3490 -3.7310 1.5861 36 1 2.5242 -3.0624 3.0219 37 1 4.3965 -3.2259 5.4173 38 1 3.9045 -2.3679 7.6723 39 1 3.3570 -0.4240 9.0202 40 1 3.8468 1.2082 8.5060 41 1 4.2257 1.2874 12.1660 42 1 5.0666 1.5453 6.4368 43 1 5.5671 0.6855 4.1843 44 1 3.8792 0.2891 1.8485 45 1 4.0319 -0.6908 0.3581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885093628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:14 Heat of formation + Delta-G solvation = -110.144609 kcal Electronic energy + Delta-G solvation = -27346.323656 eV Core-core repulsion = 23455.097761 eV Total energy + Delta-G solvation = -3891.225894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.75627 -38.81640 -37.16930 -36.80552 -35.77511 -33.69423 -32.24134 -31.57309 -30.59903 -30.12569 -28.98085 -27.44233 -23.77482 -23.64134 -22.80094 -22.35512 -20.84891 -20.53518 -19.04428 -18.02594 -17.46259 -17.13429 -16.46599 -16.31903 -15.66039 -15.36593 -15.10619 -14.58181 -14.40124 -14.36312 -14.10898 -13.78777 -13.62493 -13.50122 -13.13106 -12.89891 -12.77863 -12.44301 -12.24765 -12.11824 -12.06129 -11.96365 -11.72756 -11.67295 -11.60662 -11.50340 -11.11532 -10.98738 -10.95286 -10.91654 -10.55392 -10.49692 -10.37538 -9.78250 -9.68513 -9.16389 -8.61088 -8.55099 -8.39835 -6.18707 -4.23814 0.41445 1.31679 1.77406 2.99516 3.25078 3.29188 3.32805 3.77969 3.86806 3.99660 4.04513 4.18024 4.36310 4.43077 4.46675 4.74464 4.76172 4.90301 5.06548 5.11949 5.15971 5.20721 5.21557 5.24774 5.29671 5.43121 5.44751 5.62350 5.63778 5.70224 5.75123 5.77643 5.85461 5.89166 5.94552 6.20559 6.23021 6.31146 6.50770 6.81763 6.88554 7.23544 7.27058 7.41049 7.56852 7.76219 8.11525 8.80683 9.41172 10.91305 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002667 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.381327 B =10496.185451 C =11255.127114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.111 3.889 3 H 0.104 0.896 4 O -0.560 6.560 5 C -0.135 4.135 6 H 0.097 0.903 7 C -0.127 4.127 8 C 0.122 3.878 9 N -1.013 6.013 10 S 2.711 3.289 11 O -0.959 6.959 12 O -0.960 6.960 13 C -0.704 4.704 14 C -0.023 4.023 15 C -0.145 4.145 16 C 0.027 3.973 17 C 0.040 3.960 18 C -0.519 4.519 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.145 4.145 27 C -0.023 4.023 28 C 0.128 3.872 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.372 0.628 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 -4.558 -22.320 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.052 3.948 3 H 0.122 0.878 4 O -0.368 6.368 5 C -0.155 4.155 6 H 0.115 0.885 7 C -0.166 4.166 8 C -0.003 4.003 9 N -0.851 5.851 10 S 2.806 3.194 11 O -0.950 6.950 12 O -0.951 6.951 13 C -0.794 4.794 14 C -0.043 4.043 15 C -0.164 4.164 16 C 0.026 3.974 17 C 0.003 3.997 18 C -0.557 4.557 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.164 4.164 27 C -0.043 4.043 28 C 0.003 3.997 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.222 0.778 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.095 0.905 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.127 -4.264 -22.524 24.322 hybrid contribution 0.097 -0.217 1.629 1.646 sum -8.030 -4.480 -20.895 22.829 Atomic orbital electron populations 1.22490 0.96034 1.02722 1.02983 1.21786 0.92972 0.96572 0.83504 0.87782 1.86628 1.77238 1.29190 1.43717 1.23181 0.96158 0.96176 1.00012 0.88506 1.22685 0.98873 0.94773 1.00261 1.21664 0.87727 0.90655 1.00237 1.58695 1.39223 1.24939 1.62250 1.01238 0.71650 0.73374 0.73176 1.93557 1.57940 1.66331 1.77130 1.93548 1.83055 1.31578 1.86924 1.30416 1.22368 1.04007 1.22577 1.20762 0.92610 0.98078 0.92831 1.21244 1.02906 0.96088 0.96196 1.21115 0.86396 0.92844 0.97034 1.18530 0.97941 0.97192 0.86006 1.20935 0.96302 1.42668 0.95760 0.92342 1.25002 0.96463 0.94800 0.97842 1.69938 1.26323 1.41457 1.15281 0.86533 0.82904 0.78678 0.79243 1.20021 1.21083 1.20024 1.21247 1.01806 1.00700 0.92678 1.20767 0.93316 0.92759 0.97449 1.21993 0.94028 0.87752 0.95921 0.91301 0.91721 0.92154 0.77833 0.89806 0.90511 0.90862 0.91321 0.85365 0.85348 0.94737 0.94731 0.92558 0.85344 0.85359 0.90545 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 9.44 37.16 0.35 -0.53 16 2 C 0.11 0.67 3.43 -26.73 -0.09 0.58 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 4 O -0.56 -3.96 12.64 -35.23 -0.45 -4.40 16 5 C -0.14 -0.90 2.88 -88.47 -0.25 -1.15 16 6 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 7 C -0.13 -0.72 5.77 -24.89 -0.14 -0.86 16 8 C 0.12 1.04 6.99 -3.05 -0.02 1.02 16 9 N -1.01 -11.08 3.70 -111.41 -0.41 -11.49 16 10 S 2.71 39.50 5.94 -107.50 -0.64 38.86 16 11 O -0.96 -16.11 16.87 -57.17 -0.96 -17.07 16 12 O -0.96 -15.95 16.86 -57.17 -0.96 -16.92 16 13 C -0.70 -11.31 5.97 -39.59 -0.24 -11.55 16 14 C -0.02 -0.38 9.52 -39.59 -0.38 -0.76 16 15 C -0.15 -2.71 9.70 -39.58 -0.38 -3.09 16 16 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 17 C 0.04 0.98 5.11 -29.03 -0.15 0.83 16 18 C -0.52 -14.09 9.09 -34.44 -0.31 -14.40 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 22 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 26 C -0.15 -2.71 9.70 -39.58 -0.38 -3.09 16 27 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 28 C 0.13 1.19 6.41 -2.53 -0.02 1.17 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.24 7.75 -51.93 -0.40 -0.16 16 32 H 0.37 1.54 6.73 45.56 0.31 1.85 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.32 5.79 -51.93 -0.30 0.02 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.13 1.82 7.62 -52.48 -0.40 1.42 16 38 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 43 H 0.13 1.83 7.62 -52.49 -0.40 1.43 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.76 7.60 -51.93 -0.39 0.36 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -33.65 380.79 -11.19 -44.84 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.20 Total: 0.07 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -3.02 Total: -31.00 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.32 Total: -36.25 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -2.37 Total: -38.39 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 39.50 SS G_CDS: -0.64 Total: 38.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.65 -11.19 -44.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885093628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.300 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds