Wall clock time and date at job start Tue Mar 31 2020 23:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 119.99918 * 2 1 4 4 C 1.53000 * 109.47538 * 274.99896 * 3 2 1 5 5 C 1.53002 * 115.54883 * 325.58674 * 4 3 2 6 6 O 1.42905 * 109.47079 * 34.41120 * 5 4 3 7 7 C 1.53001 * 117.49756 * 111.24938 * 4 3 2 8 8 C 1.52996 * 117.50237 * 179.91227 * 4 3 2 9 9 S 1.65602 * 120.00009 * 180.02562 * 2 1 3 10 10 O 1.42095 * 106.40380 * 23.53567 * 9 2 1 11 11 O 1.42094 * 106.40156 * 156.46103 * 9 2 1 12 12 C 1.76202 * 107.21290 * 269.99852 * 9 2 1 13 13 C 1.38232 * 119.99951 * 269.72368 * 12 9 2 14 14 C 1.38243 * 120.00055 * 179.76953 * 13 12 9 15 15 C 1.38240 * 119.99570 * 0.48798 * 14 13 12 16 16 C 1.50697 * 119.99942 * 179.76782 * 15 14 13 17 17 C 1.50703 * 109.47271 * 270.02225 * 16 15 14 18 18 H 1.07997 * 119.99632 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99841 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99626 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00205 * 0.02562 * 19 17 16 22 22 H 1.48509 * 109.47093 * 89.99721 * 21 19 17 23 23 H 1.48495 * 109.47224 * 209.99839 * 21 19 17 24 24 H 1.48498 * 109.47097 * 330.00089 * 21 19 17 25 25 C 1.38234 * 120.00188 * 359.78799 * 15 14 13 26 26 C 1.38232 * 119.99948 * 90.00529 * 12 9 2 27 27 H 1.09005 * 109.47020 * 90.00441 * 1 2 3 28 28 H 1.09004 * 109.47028 * 209.99823 * 1 2 3 29 29 H 1.08995 * 109.47311 * 329.99580 * 1 2 3 30 30 H 1.09009 * 109.47089 * 155.00093 * 3 2 1 31 31 H 1.09000 * 109.47058 * 35.00034 * 3 2 1 32 32 H 1.09004 * 109.46930 * 274.41346 * 5 4 3 33 33 H 1.09000 * 109.47312 * 154.41290 * 5 4 3 34 34 H 0.96705 * 113.99788 * 180.02562 * 6 5 4 35 35 H 1.09004 * 117.49769 * 215.00199 * 7 4 3 36 36 H 1.08994 * 117.49896 * 0.03253 * 7 4 3 37 37 H 1.09005 * 117.49800 * 359.97438 * 8 4 3 38 38 H 1.09002 * 117.49645 * 144.97224 * 8 4 3 39 39 H 1.07995 * 120.00115 * 359.97438 * 13 12 9 40 40 H 1.07993 * 120.00035 * 180.25267 * 14 13 12 41 41 H 1.09002 * 109.47061 * 30.02270 * 16 15 14 42 42 H 1.09000 * 109.47449 * 150.01837 * 16 15 14 43 43 H 0.96997 * 119.99662 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.00158 * 179.97438 * 25 15 14 45 45 H 1.08004 * 120.00284 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 6 2.5143 0.6891 -2.5029 6 8 1.7534 -0.4636 -2.1361 7 6 1.5641 3.0308 -1.8269 8 6 3.0832 3.0957 -1.6496 9 16 2.2930 -1.4342 -0.0006 10 8 1.4114 -2.4063 -0.5454 11 8 3.5759 -1.1565 -0.5449 12 6 2.5537 -1.8865 1.6823 13 6 3.6955 -1.4701 2.3409 14 6 3.8978 -1.8209 3.6627 15 6 2.9631 -2.5966 4.3227 16 6 3.1861 -2.9835 5.7620 17 6 3.9391 -4.2876 5.8208 18 1 4.2269 -4.7865 4.9072 19 6 4.2604 -4.8437 7.0408 20 7 4.9171 -5.9820 7.0921 21 14 3.7619 -3.9810 8.6209 22 1 2.4175 -4.4529 9.0396 23 1 4.7490 -4.2901 9.6863 24 1 3.7227 -2.5141 8.3928 25 6 1.8241 -3.0178 3.6623 26 6 1.6193 -2.6625 2.3421 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 3.1858 1.1177 0.4343 31 1 1.6501 2.0042 0.5894 32 1 3.5675 0.4193 -2.5814 33 1 2.1631 1.0656 -3.4637 34 1 1.8151 -1.1930 -2.7679 35 1 1.1729 3.0857 -2.8428 36 1 0.9476 3.4988 -1.0595 37 1 3.4653 3.6064 -0.7657 38 1 3.6917 3.1930 -2.5487 39 1 4.4279 -0.8679 1.8239 40 1 4.7879 -1.4922 4.1784 41 1 3.7652 -2.2068 6.2615 42 1 2.2238 -3.0968 6.2611 43 1 5.1429 -6.3734 7.9504 44 1 1.0941 -3.6241 4.1778 45 1 0.7292 -2.9913 1.8263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885127337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:15 Heat of formation + Delta-G solvation = -56.061160 kcal Electronic energy + Delta-G solvation = -28107.895165 eV Core-core repulsion = 24219.014505 eV Total energy + Delta-G solvation = -3888.880660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.28823 -38.78871 -36.84094 -36.29250 -35.31171 -35.25742 -33.61775 -31.67383 -30.55702 -28.42727 -27.88821 -26.82033 -24.72220 -23.40311 -22.77766 -22.32669 -20.61403 -19.96383 -18.65463 -17.75570 -17.57320 -17.09780 -16.88456 -16.32706 -15.40669 -15.32023 -14.85798 -14.66430 -14.46616 -14.24843 -13.90313 -13.81548 -13.35243 -13.25074 -13.14994 -13.08717 -12.65721 -12.55186 -12.35957 -11.87253 -11.85015 -11.72014 -11.63758 -11.55312 -11.44697 -11.39734 -10.89402 -10.85687 -10.74074 -10.63539 -10.47861 -10.19050 -9.99554 -9.79457 -9.51604 -8.80834 -8.68132 -8.55849 -8.34881 -6.16460 -4.17598 0.75244 1.39207 1.80790 3.14902 3.21666 3.29920 3.31141 3.45960 3.79814 4.10414 4.32508 4.33677 4.40865 4.51464 4.67198 4.73248 4.92085 5.02787 5.12679 5.18071 5.23729 5.27621 5.30375 5.33187 5.45237 5.55505 5.56793 5.60668 5.65141 5.76087 5.77698 5.87117 5.89504 5.92602 6.07232 6.25300 6.32204 6.51484 6.70359 6.77047 6.77984 6.85157 7.32328 7.35701 7.37559 7.56925 8.37430 8.87632 9.41978 10.96180 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.002760 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.028615 B =10141.994600 C =10440.768922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.973 5.973 3 C 0.170 3.830 4 C -0.140 4.140 5 C 0.120 3.880 6 O -0.571 6.571 7 C -0.171 4.171 8 C -0.166 4.166 9 S 2.738 3.262 10 O -0.969 6.969 11 O -0.972 6.972 12 C -0.719 4.719 13 C -0.026 4.026 14 C -0.144 4.144 15 C 0.026 3.974 16 C 0.007 3.993 17 C -0.519 4.519 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.144 4.144 26 C -0.025 4.025 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.381 0.619 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.266 0.734 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 19.220 -18.111 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.809 5.809 3 C 0.044 3.956 4 C -0.142 4.142 5 C 0.043 3.957 6 O -0.379 6.379 7 C -0.208 4.208 8 C -0.203 4.203 9 S 2.828 3.172 10 O -0.960 6.960 11 O -0.963 6.963 12 C -0.805 4.805 13 C -0.045 4.045 14 C -0.163 4.163 15 C 0.026 3.974 16 C -0.030 4.030 17 C -0.557 4.557 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.163 4.163 26 C -0.044 4.044 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.231 0.769 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.121 18.987 -18.188 27.519 hybrid contribution -0.036 0.004 1.226 1.227 sum -8.158 18.991 -16.962 26.738 Atomic orbital electron populations 1.21280 0.78713 1.01726 1.01950 1.57097 1.14637 1.20191 1.88974 1.20605 0.96627 0.85754 0.92617 1.22007 1.05795 0.89123 0.97279 1.21600 0.95378 0.84377 0.94385 1.86309 1.72720 1.27341 1.51564 1.23201 0.94213 1.00687 1.02689 1.23033 0.94908 0.98628 1.03769 1.00705 0.72527 0.71642 0.72356 1.93469 1.66418 1.59431 1.76634 1.93459 1.41592 1.84545 1.76684 1.31126 1.05179 1.16604 1.27545 1.20755 0.94000 0.95414 0.94323 1.21214 0.99988 1.00552 0.94553 1.20657 0.90926 0.88026 0.97795 1.18970 0.97861 0.98210 0.87999 1.20840 1.36135 1.03964 0.94732 0.90678 1.24991 0.94424 0.94664 0.98998 1.69893 1.39416 1.18106 1.25883 0.86785 0.78714 0.80644 0.83252 1.20040 1.21087 1.18939 1.21221 0.98941 1.01570 0.94581 1.20771 0.96580 0.92754 0.94329 0.92165 0.91788 0.92262 0.89846 0.90519 0.91714 0.93424 0.76916 0.88854 0.88597 0.88087 0.88481 0.85368 0.85412 0.94880 0.95310 0.92401 0.85389 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.05 9.86 59.85 0.59 1.64 16 2 N -0.97 -10.89 1.80 -121.76 -0.22 -11.11 16 3 C 0.17 1.62 5.53 -4.04 -0.02 1.60 16 4 C -0.14 -1.19 2.52 -154.51 -0.39 -1.58 16 5 C 0.12 1.09 6.33 37.16 0.24 1.32 16 6 O -0.57 -5.99 5.55 -65.92 -0.37 -6.36 16 7 C -0.17 -1.12 9.83 -26.69 -0.26 -1.39 16 8 C -0.17 -1.09 9.97 -26.69 -0.27 -1.36 16 9 S 2.74 39.81 3.63 -107.50 -0.39 39.42 16 10 O -0.97 -15.83 15.33 -66.02 -1.01 -16.84 16 11 O -0.97 -15.40 14.27 -66.12 -0.94 -16.34 16 12 C -0.72 -11.99 5.97 -39.59 -0.24 -12.23 16 13 C -0.03 -0.43 9.52 -39.58 -0.38 -0.81 16 14 C -0.14 -2.73 9.70 -39.58 -0.38 -3.12 16 15 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 16 C 0.01 0.16 4.17 -29.03 -0.12 0.03 16 17 C -0.52 -14.54 9.65 -34.44 -0.33 -14.88 16 18 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 21 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 25 C -0.14 -2.74 9.70 -39.58 -0.38 -3.13 16 26 C -0.02 -0.43 9.52 -39.58 -0.38 -0.81 16 27 H 0.06 0.57 7.48 -51.93 -0.39 0.18 16 28 H 0.06 0.63 7.79 -51.93 -0.40 0.22 16 29 H 0.06 0.45 7.94 -51.93 -0.41 0.04 16 30 H 0.08 0.82 7.61 -51.92 -0.40 0.42 16 31 H 0.08 0.58 7.72 -51.93 -0.40 0.18 16 32 H 0.06 0.64 7.84 -51.93 -0.41 0.23 16 33 H 0.05 0.34 7.90 -51.93 -0.41 -0.07 16 34 H 0.38 3.19 8.99 45.56 0.41 3.60 16 35 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 36 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.13 1.87 7.61 -52.49 -0.40 1.47 16 40 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 42 H 0.03 0.65 7.51 -51.93 -0.39 0.26 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 45 H 0.13 1.91 7.62 -52.48 -0.40 1.51 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -34.40 373.55 -10.23 -44.64 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.08 Total: 3.84 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: -2.95 Total: -32.73 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.55 Total: -37.48 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -2.32 Total: -39.55 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 39.81 SS G_CDS: -0.39 Total: 39.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.40 -10.23 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885127337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.424 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds