Wall clock time and date at job start Tue Mar 31 2020 23:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00241 * 2 1 4 4 H 1.08997 * 112.84852 * 341.19639 * 3 2 1 5 5 C 1.53780 * 113.69108 * 112.46575 * 3 2 1 6 6 C 1.53776 * 87.07981 * 139.99367 * 5 3 2 7 7 H 1.09004 * 113.69380 * 89.12615 * 6 5 3 8 8 N 1.46501 * 113.61511 * 220.02191 * 6 5 3 9 9 C 1.46502 * 120.00075 * 37.49526 * 8 6 5 10 10 S 1.65602 * 120.00030 * 217.49963 * 8 6 5 11 11 O 1.42101 * 106.40272 * 156.45654 * 10 8 6 12 12 O 1.42101 * 106.40238 * 23.53632 * 10 8 6 13 13 C 1.76201 * 107.21860 * 269.99761 * 10 8 6 14 14 C 1.38234 * 120.00103 * 89.99902 * 13 10 8 15 15 C 1.38230 * 119.99864 * 179.97438 * 14 13 10 16 16 C 1.38235 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00236 * 179.70551 * 16 15 14 18 18 C 1.50690 * 109.47286 * 89.99933 * 17 16 15 19 19 H 1.07999 * 120.00161 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00164 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99696 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00395 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46989 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47120 * 119.99918 * 22 20 18 25 25 H 1.48497 * 109.47257 * 240.00250 * 22 20 18 26 26 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 27 27 C 1.38234 * 119.99653 * 270.02388 * 13 10 8 28 28 C 1.53778 * 113.61494 * 210.00530 * 3 2 1 29 29 H 1.08997 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46712 * 299.99678 * 1 2 3 31 31 H 1.08998 * 109.46876 * 59.99875 * 1 2 3 32 32 H 1.08997 * 113.61086 * 25.44713 * 5 3 2 33 33 H 1.08996 * 113.61268 * 254.54338 * 5 3 2 34 34 H 1.09007 * 109.47260 * 270.00257 * 9 8 6 35 35 H 1.08993 * 109.46909 * 30.00354 * 9 8 6 36 36 H 1.09003 * 109.47139 * 150.00457 * 9 8 6 37 37 H 1.08002 * 119.99744 * 359.97438 * 14 13 10 38 38 H 1.08000 * 120.00356 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.46871 * 209.99878 * 17 16 15 40 40 H 1.09001 * 109.47017 * 329.99216 * 17 16 15 41 41 H 0.97005 * 120.00116 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.00299 * 179.97438 * 26 16 15 43 43 H 1.07997 * 120.00459 * 359.97438 * 27 13 10 44 44 H 1.08991 * 113.62023 * 105.38412 * 28 3 2 45 45 H 1.08998 * 113.61372 * 334.47554 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7532 1.6510 1.3013 6 6 3.8220 2.3198 0.4210 7 1 3.6222 3.3707 0.2116 8 7 5.1930 2.0817 0.8794 9 6 5.5630 0.7785 1.4370 10 16 6.3244 3.2857 0.7673 11 8 7.3198 2.9926 1.7381 12 8 5.6050 4.5108 0.7372 13 6 7.1016 3.1264 -0.8060 14 6 6.5851 3.7911 -1.9025 15 6 7.1951 3.6665 -3.1367 16 6 8.3213 2.8768 -3.2745 17 6 8.9825 2.7357 -4.6213 18 6 10.0251 3.8114 -4.7843 19 1 10.1926 4.5256 -3.9917 20 6 10.7660 3.8832 -5.9449 21 7 10.5624 3.0132 -6.9099 22 14 12.0580 5.2171 -6.1473 23 1 12.0911 6.0632 -4.9274 24 1 13.3888 4.5904 -6.3507 25 1 11.7215 6.0577 -7.3243 26 6 8.8378 2.2121 -2.1780 27 6 8.2274 2.3363 -0.9438 28 6 3.3755 1.3718 -0.7046 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1170 0.7770 1.8416 33 1 2.2134 2.3502 1.9398 34 1 5.3978 0.7841 2.5145 35 1 4.9514 0.0008 0.9797 36 1 6.6151 0.5809 1.2318 37 1 5.7049 4.4077 -1.7949 38 1 6.7914 4.1854 -3.9935 39 1 9.4563 1.7566 -4.6926 40 1 8.2327 2.8344 -5.4063 41 1 11.0834 3.0639 -7.7266 42 1 9.7174 1.5948 -2.2856 43 1 8.6310 1.8170 -0.0872 44 1 3.3382 1.8457 -1.6854 45 1 3.9095 0.4216 -0.7125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885184426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:05 Heat of formation + Delta-G solvation = -73.710648 kcal Electronic energy + Delta-G solvation = -27309.424737 eV Core-core repulsion = 23419.778738 eV Total energy + Delta-G solvation = -3889.645999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03062 -38.79571 -37.22161 -37.06613 -35.77678 -33.85431 -33.67849 -31.55753 -30.57747 -27.55476 -27.43479 -26.73251 -25.95881 -23.81091 -23.58118 -22.33926 -20.86998 -19.90329 -19.09781 -18.15474 -17.43624 -16.95075 -16.45296 -16.28107 -15.63074 -15.47966 -15.12034 -14.81560 -14.55037 -14.37475 -14.26229 -14.09938 -13.68238 -13.13064 -12.92067 -12.84515 -12.75923 -12.47857 -12.27978 -12.20319 -12.12056 -11.98969 -11.74224 -11.70715 -11.49327 -11.43738 -11.12420 -11.01383 -10.93316 -10.89908 -10.50641 -10.49380 -9.80851 -9.75053 -9.65267 -9.15847 -8.59118 -8.54587 -8.37260 -6.17785 -4.22668 0.44209 1.33472 1.79661 2.90135 3.22722 3.30788 3.36111 3.51175 3.76529 4.07855 4.18153 4.23520 4.36618 4.38182 4.50694 4.54502 4.73268 4.91172 5.03238 5.07592 5.15175 5.21285 5.22619 5.30202 5.32948 5.41537 5.47141 5.51930 5.59105 5.67053 5.72168 5.74830 5.81836 5.91200 6.09729 6.25163 6.32710 6.37266 6.53357 6.83760 6.89074 6.90626 7.29151 7.43130 7.58747 7.77595 8.12864 8.82445 9.42383 10.92290 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.002720 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.287053 B =10290.764335 C =11266.186254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.062 3.938 4 H 0.092 0.908 5 C -0.159 4.159 6 C 0.124 3.876 7 H 0.129 0.871 8 N -0.988 5.988 9 C 0.091 3.909 10 S 2.694 3.306 11 O -0.961 6.961 12 O -0.964 6.964 13 C -0.703 4.703 14 C -0.022 4.022 15 C -0.145 4.145 16 C 0.027 3.973 17 C 0.039 3.961 18 C -0.516 4.516 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.145 4.145 27 C -0.024 4.024 28 C -0.151 4.151 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.681 -5.901 15.165 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.003 3.997 4 H 0.110 0.890 5 C -0.199 4.199 6 C 0.017 3.983 7 H 0.146 0.854 8 N -0.824 5.824 9 C -0.054 4.054 10 S 2.788 3.212 11 O -0.952 6.952 12 O -0.954 6.954 13 C -0.792 4.792 14 C -0.042 4.042 15 C -0.164 4.164 16 C 0.026 3.974 17 C 0.002 3.998 18 C -0.554 4.554 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.043 4.043 28 C -0.190 4.190 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.100 0.900 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.318 -5.508 15.664 24.724 hybrid contribution 0.724 0.579 -1.018 1.377 sum -17.595 -4.929 14.646 23.417 Atomic orbital electron populations 1.22794 0.81201 1.02746 0.99967 1.87951 1.19624 1.27190 1.94572 1.23525 0.93962 0.85474 0.96702 0.89049 1.23903 0.96846 1.01542 0.97606 1.22180 0.80273 1.00351 0.95449 0.85368 1.57416 1.20800 1.28030 1.76183 1.21478 1.01215 0.84110 0.98590 1.01764 0.72597 0.72593 0.74201 1.93554 1.58814 1.84618 1.58185 1.93533 1.72746 1.41623 1.87538 1.30372 1.12404 1.15096 1.21347 1.20738 0.97592 0.94125 0.91742 1.21234 0.97233 1.00710 0.97230 1.21108 0.90427 0.87789 0.98058 1.18541 0.95661 0.98520 0.87049 1.21007 1.18877 1.13594 1.01965 0.92243 1.25008 0.97301 0.96203 0.95677 1.69958 1.40878 1.35662 1.06488 0.86427 0.81161 0.81592 0.78267 1.19566 1.20797 1.20794 1.21244 1.00860 1.02084 0.92227 1.20761 0.92137 0.93609 0.97811 1.23751 0.95042 1.01394 0.98857 0.89742 0.94048 0.93922 0.88268 0.90551 0.92248 0.90549 0.90708 0.85403 0.85379 0.94721 0.94717 0.92684 0.85365 0.85371 0.90012 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.85 101.05 1.10 1.28 16 2 O -0.38 -3.38 10.72 -35.23 -0.38 -3.76 16 3 C 0.06 0.48 4.31 -25.92 -0.11 0.37 16 4 H 0.09 0.57 7.87 -51.93 -0.41 0.16 16 5 C -0.16 -1.24 7.34 -25.92 -0.19 -1.43 16 6 C 0.12 1.15 4.30 -67.12 -0.29 0.86 16 7 H 0.13 1.17 7.07 -51.93 -0.37 0.80 16 8 N -0.99 -10.57 3.39 -113.74 -0.39 -10.96 16 9 C 0.09 0.80 8.89 59.85 0.53 1.34 16 10 S 2.69 38.08 5.65 -107.50 -0.61 37.47 16 11 O -0.96 -15.64 16.36 -57.17 -0.94 -16.58 16 12 O -0.96 -15.34 15.91 -57.17 -0.91 -16.25 16 13 C -0.70 -11.11 5.97 -39.58 -0.24 -11.35 16 14 C -0.02 -0.36 9.52 -39.59 -0.38 -0.74 16 15 C -0.15 -2.68 9.70 -39.59 -0.38 -3.07 16 16 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 17 C 0.04 0.96 5.10 -29.04 -0.15 0.81 16 18 C -0.52 -14.01 9.09 -34.45 -0.31 -14.32 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 27 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 28 C -0.15 -1.32 7.45 -25.92 -0.19 -1.51 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.77 6.72 -51.93 -0.35 0.42 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.56 6.34 -51.93 -0.33 0.23 16 36 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 37 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 38 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.92 6.92 -51.93 -0.36 0.57 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -33.03 383.58 -10.50 -43.54 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.78 Total: -0.51 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -2.00 Total: -30.04 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.35 Total: -35.76 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -2.22 Total: -36.59 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 38.08 SS G_CDS: -0.61 Total: 37.47 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.03 -10.50 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885184426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.174 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds