Wall clock time and date at job start Tue Mar 31 2020 23:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00241 * 2 1 4 4 H 1.08997 * 112.84852 * 341.19639 * 3 2 1 5 5 C 1.53780 * 113.69108 * 112.46575 * 3 2 1 6 6 C 1.53776 * 87.07981 * 139.99367 * 5 3 2 7 7 H 1.09004 * 113.69380 * 89.12615 * 6 5 3 8 8 N 1.46501 * 113.61511 * 220.02191 * 6 5 3 9 9 C 1.46502 * 120.00075 * 37.49526 * 8 6 5 10 10 S 1.65602 * 120.00030 * 217.49963 * 8 6 5 11 11 O 1.42101 * 106.40272 * 156.45654 * 10 8 6 12 12 O 1.42101 * 106.40238 * 23.53632 * 10 8 6 13 13 C 1.76201 * 107.21860 * 269.99761 * 10 8 6 14 14 C 1.38234 * 120.00103 * 89.99902 * 13 10 8 15 15 C 1.38230 * 119.99864 * 179.97438 * 14 13 10 16 16 C 1.38235 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00236 * 179.70551 * 16 15 14 18 18 C 1.50690 * 109.47286 * 89.99933 * 17 16 15 19 19 H 1.07999 * 120.00161 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00164 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99696 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00395 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46989 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47120 * 119.99918 * 22 20 18 25 25 H 1.48497 * 109.47257 * 240.00250 * 22 20 18 26 26 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 27 27 C 1.38234 * 119.99653 * 270.02388 * 13 10 8 28 28 C 1.53778 * 113.61494 * 210.00530 * 3 2 1 29 29 H 1.08997 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46712 * 299.99678 * 1 2 3 31 31 H 1.08998 * 109.46876 * 59.99875 * 1 2 3 32 32 H 1.08997 * 113.61086 * 25.44713 * 5 3 2 33 33 H 1.08996 * 113.61268 * 254.54338 * 5 3 2 34 34 H 1.09007 * 109.47260 * 270.00257 * 9 8 6 35 35 H 1.08993 * 109.46909 * 30.00354 * 9 8 6 36 36 H 1.09003 * 109.47139 * 150.00457 * 9 8 6 37 37 H 1.08002 * 119.99744 * 359.97438 * 14 13 10 38 38 H 1.08000 * 120.00356 * 179.97438 * 15 14 13 39 39 H 1.09003 * 109.46871 * 209.99878 * 17 16 15 40 40 H 1.09001 * 109.47017 * 329.99216 * 17 16 15 41 41 H 0.97005 * 120.00116 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.00299 * 179.97438 * 26 16 15 43 43 H 1.07997 * 120.00459 * 359.97438 * 27 13 10 44 44 H 1.08991 * 113.62023 * 105.38412 * 28 3 2 45 45 H 1.08998 * 113.61372 * 334.47554 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0788 -0.3238 5 6 2.7532 1.6510 1.3013 6 6 3.8220 2.3198 0.4210 7 1 3.6222 3.3707 0.2116 8 7 5.1930 2.0817 0.8794 9 6 5.5630 0.7785 1.4370 10 16 6.3244 3.2857 0.7673 11 8 7.3198 2.9926 1.7381 12 8 5.6050 4.5108 0.7372 13 6 7.1016 3.1264 -0.8060 14 6 6.5851 3.7911 -1.9025 15 6 7.1951 3.6665 -3.1367 16 6 8.3213 2.8768 -3.2745 17 6 8.9825 2.7357 -4.6213 18 6 10.0251 3.8114 -4.7843 19 1 10.1926 4.5256 -3.9917 20 6 10.7660 3.8832 -5.9449 21 7 10.5624 3.0132 -6.9099 22 14 12.0580 5.2171 -6.1473 23 1 12.0911 6.0632 -4.9274 24 1 13.3888 4.5904 -6.3507 25 1 11.7215 6.0577 -7.3243 26 6 8.8378 2.2121 -2.1780 27 6 8.2274 2.3363 -0.9438 28 6 3.3755 1.3718 -0.7046 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1170 0.7770 1.8416 33 1 2.2134 2.3502 1.9398 34 1 5.3978 0.7841 2.5145 35 1 4.9514 0.0008 0.9797 36 1 6.6151 0.5809 1.2318 37 1 5.7049 4.4077 -1.7949 38 1 6.7914 4.1854 -3.9935 39 1 9.4563 1.7566 -4.6926 40 1 8.2327 2.8344 -5.4063 41 1 11.0834 3.0639 -7.7266 42 1 9.7174 1.5948 -2.2856 43 1 8.6310 1.8170 -0.0872 44 1 3.3382 1.8457 -1.6854 45 1 3.9095 0.4216 -0.7125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885184426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:04 Heat of formation + Delta-G solvation = -94.815648 kcal Electronic energy + Delta-G solvation = -27310.339919 eV Core-core repulsion = 23419.778738 eV Total energy + Delta-G solvation = -3890.561181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67803 -40.22812 -38.41169 -37.72318 -36.98791 -35.60363 -34.59854 -33.32066 -31.96363 -29.25123 -28.16136 -27.33725 -26.58376 -25.59830 -24.36854 -23.72502 -22.43976 -20.67907 -20.00419 -19.21321 -18.65224 -18.50593 -17.73854 -17.02165 -16.86786 -16.60673 -16.10809 -15.97559 -15.89523 -15.42988 -15.34394 -14.90308 -14.72938 -14.63835 -14.46007 -13.95324 -13.70262 -13.49420 -13.42496 -13.39500 -13.32434 -13.20700 -13.02877 -12.69654 -12.69459 -12.65400 -12.60257 -12.20980 -12.04549 -12.01284 -11.73310 -11.67080 -11.62305 -11.42089 -10.66687 -10.37526 -10.05513 -9.96289 -9.87365 -8.28032 -6.40692 -0.68751 -0.06000 0.39782 1.36578 1.38029 1.50785 1.89147 2.34184 2.57058 2.76640 2.96188 3.04603 3.24447 3.52144 3.59197 3.85771 3.87799 3.93207 3.97075 4.00474 4.15705 4.35283 4.45839 4.47376 4.58896 4.62797 4.67690 4.77709 4.81274 4.82238 4.88755 4.90637 4.91538 4.96676 5.07303 5.08378 5.12417 5.24158 5.25483 5.33133 5.40904 5.60383 5.66478 5.85921 5.92288 6.09366 6.36294 6.71345 7.28467 8.82277 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.002720 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.287053 B =10290.764335 C =11266.186254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.064 3.936 4 H 0.109 0.891 5 C -0.152 4.152 6 C 0.114 3.886 7 H 0.132 0.868 8 N -0.979 5.979 9 C 0.080 3.920 10 S 2.716 3.284 11 O -0.980 6.980 12 O -0.979 6.979 13 C -0.700 4.700 14 C -0.018 4.018 15 C -0.154 4.154 16 C -0.004 4.004 17 C 0.048 3.952 18 C -0.532 4.532 19 H 0.053 0.947 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.155 4.155 27 C -0.020 4.020 28 C -0.155 4.155 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.156 0.844 38 H 0.130 0.870 39 H 0.013 0.987 40 H 0.014 0.986 41 H 0.267 0.733 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.081 0.919 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.958 -5.443 17.039 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C 0.006 3.994 4 H 0.127 0.873 5 C -0.192 4.192 6 C 0.008 3.992 7 H 0.149 0.851 8 N -0.817 5.817 9 C -0.064 4.064 10 S 2.808 3.192 11 O -0.970 6.970 12 O -0.969 6.969 13 C -0.787 4.787 14 C -0.037 4.037 15 C -0.173 4.173 16 C -0.004 4.004 17 C 0.011 3.989 18 C -0.570 4.570 19 H 0.071 0.929 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.174 4.174 27 C -0.040 4.040 28 C -0.194 4.194 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.172 0.828 44 H 0.100 0.900 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.587 -5.052 17.521 26.761 hybrid contribution 0.985 0.359 -1.505 1.834 sum -18.602 -4.693 16.016 24.991 Atomic orbital electron populations 1.22956 0.79847 1.03597 1.00845 1.87914 1.21215 1.27854 1.94675 1.23566 0.93808 0.85649 0.96387 0.87349 1.23875 0.96060 1.01595 0.97643 1.22424 0.79565 1.00832 0.96366 0.85065 1.57191 1.20557 1.28089 1.75911 1.21735 1.01708 0.83399 0.99544 1.01130 0.72338 0.72662 0.73045 1.93528 1.60109 1.85055 1.58330 1.93510 1.72873 1.43128 1.87409 1.30869 1.11943 1.13555 1.22367 1.21005 0.98025 0.93895 0.90753 1.21298 0.96870 1.00586 0.98541 1.20815 0.92154 0.90684 0.96752 1.18262 0.94753 0.96729 0.89108 1.21308 1.19687 1.14089 1.01917 0.92866 1.25870 0.99384 0.98396 0.95351 1.70062 1.42052 1.37325 1.07055 0.85403 0.78558 0.78820 0.78332 1.19225 1.20044 1.19982 1.21302 1.01243 1.02192 0.92689 1.21013 0.91940 0.93432 0.97566 1.23765 0.95896 1.00906 0.98872 0.89036 0.92964 0.93221 0.88191 0.89244 0.90901 0.89037 0.90590 0.82643 0.85193 0.96905 0.96817 0.92367 0.85300 0.82811 0.89999 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.85 113.37 1.23 1.47 16 2 O -0.40 -6.38 10.72 -148.98 -1.60 -7.97 16 3 C 0.06 0.85 4.31 31.12 0.13 0.99 16 4 H 0.11 1.04 7.87 -2.39 -0.02 1.02 16 5 C -0.15 -1.94 7.34 31.12 0.23 -1.72 16 6 C 0.11 1.84 4.30 45.52 0.20 2.03 16 7 H 0.13 2.05 7.07 -2.38 -0.02 2.04 16 8 N -0.98 -18.64 3.39 -513.75 -1.74 -20.38 16 9 C 0.08 1.22 8.89 127.77 1.14 2.36 16 10 S 2.72 70.91 5.65 -56.49 -0.32 70.59 16 11 O -0.98 -29.77 16.36 -128.00 -2.09 -31.87 16 12 O -0.98 -28.92 15.91 -128.00 -2.04 -30.95 16 13 C -0.70 -21.04 5.97 22.27 0.13 -20.91 16 14 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 15 C -0.15 -5.74 9.70 22.27 0.22 -5.53 16 16 C 0.00 -0.16 5.07 -19.87 -0.10 -0.26 16 17 C 0.05 2.49 5.10 29.10 0.15 2.64 16 18 C -0.53 -29.76 9.09 25.60 0.23 -29.53 16 19 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 20 C 0.01 0.50 5.46 84.65 0.46 0.96 16 21 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 22 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C -0.16 -5.85 9.70 22.27 0.22 -5.63 16 27 C -0.02 -0.65 9.52 22.27 0.21 -0.43 16 28 C -0.15 -2.42 7.45 31.12 0.23 -2.19 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 1.28 6.72 -2.39 -0.02 1.26 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.09 1.13 6.34 -2.39 -0.02 1.11 16 36 H 0.08 1.15 7.79 -2.39 -0.02 1.13 16 37 H 0.16 3.93 7.62 -2.91 -0.02 3.90 16 38 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 39 H 0.01 0.69 8.08 -2.39 -0.02 0.67 16 40 H 0.01 0.74 8.09 -2.39 -0.02 0.72 16 41 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 42 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.15 4.01 7.62 -2.91 -0.02 3.99 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.09 1.58 6.92 -2.39 -0.02 1.56 16 Total: -1.00 -71.12 383.58 0.39 -70.74 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.98 Total: 14.21 kcal Atomic # 6 Polarization: -60.98 SS G_CDS: 4.89 Total: -56.09 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -1.46 Total: -74.44 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -5.73 Total: -70.79 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 70.91 SS G_CDS: -0.32 Total: 70.59 kcal Total: -71.12 0.39 -70.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885184426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.080 kcal (2) G-P(sol) polarization free energy of solvation -71.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds