Wall clock time and date at job start Tue Mar 31 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46836 * 2 1 4 4 O 1.42905 * 109.46738 * 240.00097 * 2 1 3 5 5 C 1.52995 * 109.47014 * 120.00200 * 2 1 3 6 6 N 1.46500 * 109.46930 * 185.61854 * 5 2 1 7 7 C 1.46506 * 119.99826 * 82.76653 * 6 5 2 8 8 C 1.52996 * 117.49987 * 2.21245 * 7 6 5 9 9 C 1.52997 * 117.49632 * 293.55410 * 7 6 5 10 10 S 1.65594 * 119.99929 * 262.76134 * 6 5 2 11 11 O 1.42096 * 106.40523 * 343.43070 * 10 6 5 12 12 O 1.42095 * 106.40364 * 210.50518 * 10 6 5 13 13 C 1.76209 * 107.21503 * 96.96963 * 10 6 5 14 14 C 1.38230 * 120.00170 * 83.21618 * 13 10 6 15 15 C 1.38231 * 120.00229 * 180.02562 * 14 13 10 16 16 C 1.38240 * 119.99681 * 0.24608 * 15 14 13 17 17 C 1.50700 * 119.99874 * 179.72542 * 16 15 14 18 18 C 1.50699 * 109.46861 * 90.00576 * 17 16 15 19 19 H 1.08003 * 119.99892 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00379 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99525 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00356 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47324 * 59.99299 * 22 20 18 24 24 H 1.48503 * 109.47141 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47143 * 299.99479 * 22 20 18 26 26 C 1.38237 * 120.00139 * 359.49804 * 16 15 14 27 27 C 1.38235 * 119.99774 * 0.48250 * 26 16 15 28 28 H 1.08994 * 109.46873 * 300.00286 * 1 2 3 29 29 H 1.09001 * 109.47138 * 59.99680 * 1 2 3 30 30 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 31 31 H 0.96698 * 113.99859 * 305.11242 * 4 2 1 32 32 H 1.08998 * 109.47122 * 65.61790 * 5 2 1 33 33 H 1.08999 * 109.46851 * 305.61464 * 5 2 1 34 34 H 1.09008 * 115.54641 * 147.88711 * 7 6 5 35 35 H 1.08998 * 117.49740 * 0.02562 * 8 7 6 36 36 H 1.09005 * 117.49388 * 145.02125 * 8 7 6 37 37 H 1.09000 * 117.49627 * 214.98139 * 9 7 6 38 38 H 1.08994 * 117.50141 * 359.97438 * 9 7 6 39 39 H 1.08001 * 119.99681 * 359.97314 * 14 13 10 40 40 H 1.07997 * 120.00267 * 179.97438 * 15 14 13 41 41 H 1.08990 * 109.47473 * 210.00288 * 17 16 15 42 42 H 1.09004 * 109.47535 * 330.01128 * 17 16 15 43 43 H 0.96996 * 119.99440 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.00141 * 180.25123 * 26 16 15 45 45 H 1.07996 * 119.99996 * 179.76906 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 7 3.4988 -0.6053 1.3187 7 6 4.1117 0.6014 1.8797 8 6 3.1751 1.6821 2.4234 9 6 3.9273 1.9106 1.1099 10 16 4.4548 -1.8380 0.7633 11 8 3.6158 -2.9800 0.6573 12 8 5.6383 -1.8133 1.5492 13 6 4.9395 -1.4226 -0.8791 14 6 6.0181 -0.5844 -1.0903 15 6 6.3981 -0.2581 -2.3787 16 6 5.6962 -0.7661 -3.4559 17 6 6.1065 -0.4055 -4.8604 18 6 7.1110 -1.4098 -5.3637 19 1 7.4215 -2.2272 -4.7297 20 6 7.6345 -1.2846 -6.6331 21 7 7.2567 -0.2889 -7.4048 22 14 8.8790 -2.5299 -7.2572 23 1 8.2695 -3.8841 -7.2524 24 1 9.2835 -2.1745 -8.6412 25 1 10.0731 -2.5215 -6.3745 26 6 4.6208 -1.6087 -3.2448 27 6 4.2411 -1.9352 -1.9564 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6583 -1.5695 -1.2733 32 1 1.7612 -1.7738 1.2003 33 1 1.5969 -0.2688 2.1363 34 1 5.0597 0.4504 2.3963 35 1 2.1029 1.4952 2.3640 36 1 3.5071 2.2425 3.2974 37 1 4.7537 2.6213 1.1204 38 1 3.3503 1.8742 0.1859 39 1 6.5635 -0.1836 -0.2486 40 1 7.2405 0.3972 -2.5437 41 1 5.2300 -0.4124 -5.5081 42 1 6.5536 0.5887 -4.8644 43 1 7.6247 -0.2011 -8.2980 44 1 4.0749 -2.0088 -4.0864 45 1 3.3986 -2.5905 -1.7914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885279121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:13 Heat of formation + Delta-G solvation = -74.031127 kcal Electronic energy + Delta-G solvation = -28472.932320 eV Core-core repulsion = 24583.272424 eV Total energy + Delta-G solvation = -3889.659896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.23336 -38.62128 -37.44907 -36.73755 -35.75753 -33.60198 -33.37349 -31.46955 -31.17488 -30.40190 -27.32785 -26.56823 -23.64803 -22.94307 -22.29639 -22.02129 -21.49980 -20.62290 -19.17603 -18.19914 -17.33071 -17.07506 -16.38397 -15.95719 -15.56911 -15.20682 -15.03293 -14.96171 -14.59345 -14.27785 -14.24321 -13.70941 -13.30647 -12.96779 -12.80114 -12.70591 -12.55134 -12.32575 -12.15753 -12.10630 -11.97598 -11.89480 -11.76844 -11.59662 -11.40615 -11.38341 -10.90059 -10.86376 -10.82349 -10.67469 -10.46735 -10.37135 -10.29307 -9.66634 -9.56711 -8.91078 -8.49048 -8.36916 -8.21319 -6.11733 -4.16331 0.50071 1.52041 1.98956 2.88443 3.29280 3.33146 3.36868 3.53747 3.82068 4.09281 4.23837 4.29615 4.44318 4.53398 4.60038 4.65220 4.71184 4.78092 4.81505 4.95796 5.22797 5.24001 5.26718 5.33898 5.35944 5.41905 5.46403 5.60698 5.73826 5.82626 5.86195 5.92755 6.01284 6.02503 6.06598 6.40181 6.42057 6.49039 6.68423 6.98772 7.04295 7.39118 7.50114 7.57771 7.70402 7.83605 8.20486 8.88377 9.48107 10.98311 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.003268 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.295347 B = 8565.078308 C = 8854.993440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.072 3.928 3 H 0.107 0.893 4 O -0.548 6.548 5 C 0.080 3.920 6 N -0.965 5.965 7 C 0.077 3.923 8 C -0.179 4.179 9 C -0.194 4.194 10 S 2.700 3.300 11 O -0.968 6.968 12 O -0.967 6.967 13 C -0.689 4.689 14 C -0.022 4.022 15 C -0.148 4.148 16 C 0.026 3.974 17 C 0.041 3.959 18 C -0.516 4.516 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.145 4.145 27 C 0.006 3.994 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.373 0.627 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.124 0.876 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 3.735 19.438 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.012 3.988 3 H 0.124 0.876 4 O -0.354 6.354 5 C -0.046 4.046 6 N -0.798 5.798 7 C -0.030 4.030 8 C -0.218 4.218 9 C -0.234 4.234 10 S 2.796 3.204 11 O -0.959 6.959 12 O -0.957 6.957 13 C -0.780 4.780 14 C -0.041 4.041 15 C -0.167 4.167 16 C 0.026 3.974 17 C 0.004 3.996 18 C -0.554 4.554 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.164 4.164 27 C -0.014 4.014 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.221 0.779 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.142 0.858 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.017 3.583 19.688 23.873 hybrid contribution 0.344 -0.577 -1.025 1.225 sum -12.673 3.007 18.663 22.758 Atomic orbital electron populations 1.22478 0.95950 1.02896 1.03024 1.22624 0.93014 0.97870 0.85325 0.87574 1.86834 1.72315 1.32271 1.43951 1.22246 0.79664 1.03132 0.99540 1.57042 1.15115 1.32478 1.75171 1.21570 0.98890 0.80660 1.01867 1.23263 0.98587 1.01529 0.98387 1.23607 1.03750 0.99862 0.96137 1.01493 0.72530 0.72270 0.74113 1.93505 1.68173 1.46515 1.87667 1.93538 1.47194 1.86237 1.68728 1.30080 1.10128 1.16563 1.21217 1.20628 0.92900 0.92919 0.97673 1.21140 1.01072 1.02715 0.91811 1.21026 0.89689 0.88602 0.98118 1.18500 0.97328 0.97700 0.86087 1.20957 1.24078 1.11011 0.99374 0.92374 1.25000 0.96757 0.95740 0.96654 1.69946 1.43603 1.30390 1.09162 0.86552 0.81547 0.81526 0.77819 1.20068 1.21159 1.20069 1.21135 0.98825 1.00181 0.96308 1.20510 0.95159 0.93854 0.91838 0.91640 0.91293 0.91941 0.77945 0.88252 0.89107 0.84244 0.88230 0.87890 0.87874 0.87645 0.86016 0.85778 0.94854 0.94919 0.92657 0.85790 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 9.49 37.16 0.35 -0.80 16 2 C 0.07 0.60 3.64 -26.73 -0.10 0.51 16 3 H 0.11 0.93 5.08 -51.93 -0.26 0.66 16 4 O -0.55 -5.92 10.44 -35.23 -0.37 -6.29 16 5 C 0.08 0.67 4.69 -4.04 -0.02 0.65 16 6 N -0.97 -10.40 3.08 -107.30 -0.33 -10.73 16 7 C 0.08 0.73 6.35 -67.93 -0.43 0.30 16 8 C -0.18 -1.22 9.58 -26.70 -0.26 -1.47 16 9 C -0.19 -1.66 9.89 -26.70 -0.26 -1.93 16 10 S 2.70 39.19 5.68 -107.50 -0.61 38.58 16 11 O -0.97 -15.17 15.55 -57.17 -0.89 -16.06 16 12 O -0.97 -16.35 16.47 -57.17 -0.94 -17.29 16 13 C -0.69 -11.26 5.63 -39.58 -0.22 -11.48 16 14 C -0.02 -0.37 9.52 -39.59 -0.38 -0.74 16 15 C -0.15 -2.87 9.70 -39.58 -0.38 -3.26 16 16 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 17 C 0.04 1.02 5.10 -29.04 -0.15 0.87 16 18 C -0.52 -14.28 9.09 -34.44 -0.31 -14.59 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 22 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.15 -2.79 9.70 -39.58 -0.38 -3.17 16 27 C 0.01 0.10 7.24 -39.58 -0.29 -0.19 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.37 3.16 8.13 45.56 0.37 3.54 16 32 H 0.10 0.85 6.82 -51.93 -0.35 0.49 16 33 H 0.09 0.56 6.45 -51.93 -0.33 0.22 16 34 H 0.14 1.33 7.56 -51.92 -0.39 0.94 16 35 H 0.10 0.58 6.24 -51.93 -0.32 0.25 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 1.01 5.85 -51.93 -0.30 0.71 16 39 H 0.12 1.80 7.78 -52.49 -0.41 1.39 16 40 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.12 1.73 6.48 -52.49 -0.34 1.38 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -33.48 374.98 -10.92 -44.41 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.69 Total: 4.24 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: -3.46 Total: -33.68 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.41 Total: -35.95 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -2.20 Total: -39.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 39.19 SS G_CDS: -0.61 Total: 38.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.48 -10.92 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885279121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.623 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds