Wall clock time and date at job start Tue Mar 31 2020 22:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46836 * 2 1 4 4 O 1.42905 * 109.46738 * 240.00097 * 2 1 3 5 5 C 1.52995 * 109.47014 * 120.00200 * 2 1 3 6 6 N 1.46500 * 109.46930 * 185.61854 * 5 2 1 7 7 C 1.46506 * 119.99826 * 82.76653 * 6 5 2 8 8 C 1.52996 * 117.49987 * 2.21245 * 7 6 5 9 9 C 1.52997 * 117.49632 * 293.55410 * 7 6 5 10 10 S 1.65594 * 119.99929 * 262.76134 * 6 5 2 11 11 O 1.42096 * 106.40523 * 343.43070 * 10 6 5 12 12 O 1.42095 * 106.40364 * 210.50518 * 10 6 5 13 13 C 1.76209 * 107.21503 * 96.96963 * 10 6 5 14 14 C 1.38230 * 120.00170 * 83.21618 * 13 10 6 15 15 C 1.38231 * 120.00229 * 180.02562 * 14 13 10 16 16 C 1.38240 * 119.99681 * 0.24608 * 15 14 13 17 17 C 1.50700 * 119.99874 * 179.72542 * 16 15 14 18 18 C 1.50699 * 109.46861 * 90.00576 * 17 16 15 19 19 H 1.08003 * 119.99892 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00379 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99525 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00356 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47324 * 59.99299 * 22 20 18 24 24 H 1.48503 * 109.47141 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47143 * 299.99479 * 22 20 18 26 26 C 1.38237 * 120.00139 * 359.49804 * 16 15 14 27 27 C 1.38235 * 119.99774 * 0.48250 * 26 16 15 28 28 H 1.08994 * 109.46873 * 300.00286 * 1 2 3 29 29 H 1.09001 * 109.47138 * 59.99680 * 1 2 3 30 30 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 31 31 H 0.96698 * 113.99859 * 305.11242 * 4 2 1 32 32 H 1.08998 * 109.47122 * 65.61790 * 5 2 1 33 33 H 1.08999 * 109.46851 * 305.61464 * 5 2 1 34 34 H 1.09008 * 115.54641 * 147.88711 * 7 6 5 35 35 H 1.08998 * 117.49740 * 0.02562 * 8 7 6 36 36 H 1.09005 * 117.49388 * 145.02125 * 8 7 6 37 37 H 1.09000 * 117.49627 * 214.98139 * 9 7 6 38 38 H 1.08994 * 117.50141 * 359.97438 * 9 7 6 39 39 H 1.08001 * 119.99681 * 359.97314 * 14 13 10 40 40 H 1.07997 * 120.00267 * 179.97438 * 15 14 13 41 41 H 1.08990 * 109.47473 * 210.00288 * 17 16 15 42 42 H 1.09004 * 109.47535 * 330.01128 * 17 16 15 43 43 H 0.96996 * 119.99440 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.00141 * 180.25123 * 26 16 15 45 45 H 1.07996 * 119.99996 * 179.76906 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 7 3.4988 -0.6053 1.3187 7 6 4.1117 0.6014 1.8797 8 6 3.1751 1.6821 2.4234 9 6 3.9273 1.9106 1.1099 10 16 4.4548 -1.8380 0.7633 11 8 3.6158 -2.9800 0.6573 12 8 5.6383 -1.8133 1.5492 13 6 4.9395 -1.4226 -0.8791 14 6 6.0181 -0.5844 -1.0903 15 6 6.3981 -0.2581 -2.3787 16 6 5.6962 -0.7661 -3.4559 17 6 6.1065 -0.4055 -4.8604 18 6 7.1110 -1.4098 -5.3637 19 1 7.4215 -2.2272 -4.7297 20 6 7.6345 -1.2846 -6.6331 21 7 7.2567 -0.2889 -7.4048 22 14 8.8790 -2.5299 -7.2572 23 1 8.2695 -3.8841 -7.2524 24 1 9.2835 -2.1745 -8.6412 25 1 10.0731 -2.5215 -6.3745 26 6 4.6208 -1.6087 -3.2448 27 6 4.2411 -1.9352 -1.9564 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6583 -1.5695 -1.2733 32 1 1.7612 -1.7738 1.2003 33 1 1.5969 -0.2688 2.1363 34 1 5.0597 0.4504 2.3963 35 1 2.1029 1.4952 2.3640 36 1 3.5071 2.2425 3.2974 37 1 4.7537 2.6213 1.1204 38 1 3.3503 1.8742 0.1859 39 1 6.5635 -0.1836 -0.2486 40 1 7.2405 0.3972 -2.5437 41 1 5.2300 -0.4124 -5.5081 42 1 6.5536 0.5887 -4.8644 43 1 7.6247 -0.2011 -8.2980 44 1 4.0749 -2.0088 -4.0864 45 1 3.3986 -2.5905 -1.7914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885279121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:12 Heat of formation + Delta-G solvation = -96.878502 kcal Electronic energy + Delta-G solvation = -28473.923057 eV Core-core repulsion = 24583.272424 eV Total energy + Delta-G solvation = -3890.650633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16389 -39.88108 -38.53026 -37.57928 -36.99200 -35.56765 -34.14086 -33.25804 -31.94476 -31.75721 -29.19277 -27.20792 -25.55417 -23.73819 -23.46896 -22.84668 -22.51751 -21.93202 -20.14057 -19.30368 -18.61519 -18.45751 -17.88839 -16.93729 -16.83389 -16.39115 -16.07868 -15.97777 -15.78042 -15.58261 -15.29370 -15.06428 -14.58360 -14.36827 -13.99804 -13.83708 -13.61445 -13.38866 -13.35600 -13.24133 -13.20469 -13.14063 -12.90332 -12.66755 -12.64253 -12.62975 -12.52001 -12.11309 -12.01193 -11.96213 -11.67964 -11.48831 -11.36996 -11.32307 -10.99301 -10.64455 -9.89208 -9.81363 -9.62430 -8.25968 -6.39097 -0.64152 0.07339 0.53262 1.38140 1.40337 1.48774 1.86916 2.35862 2.60571 2.84838 2.90223 3.06099 3.25553 3.51662 3.81148 3.86637 3.96719 3.98635 4.04726 4.09333 4.11997 4.19771 4.23205 4.36585 4.54939 4.55445 4.66944 4.71441 4.89906 4.91880 4.92979 4.97717 5.05146 5.18900 5.22844 5.26980 5.27457 5.30613 5.34060 5.41397 5.42586 5.64266 5.68058 5.93532 6.00468 6.14237 6.72520 6.87136 7.29770 8.83989 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.003268 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.295347 B = 8565.078308 C = 8854.993440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.574 6.574 5 C 0.074 3.926 6 N -0.955 5.955 7 C 0.051 3.949 8 C -0.149 4.149 9 C -0.203 4.203 10 S 2.720 3.280 11 O -0.978 6.978 12 O -0.989 6.989 13 C -0.689 4.689 14 C -0.019 4.019 15 C -0.160 4.160 16 C -0.005 4.005 17 C 0.051 3.949 18 C -0.534 4.534 19 H 0.054 0.946 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.965 3.035 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.156 4.156 27 C 0.015 3.985 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.380 0.620 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.145 0.855 40 H 0.123 0.877 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.267 0.733 44 H 0.123 0.877 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 3.292 21.982 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.010 3.990 3 H 0.119 0.881 4 O -0.382 6.382 5 C -0.051 4.051 6 N -0.791 5.791 7 C -0.055 4.055 8 C -0.188 4.188 9 C -0.242 4.242 10 S 2.813 3.187 11 O -0.968 6.968 12 O -0.979 6.979 13 C -0.777 4.777 14 C -0.038 4.038 15 C -0.179 4.179 16 C -0.005 4.005 17 C 0.014 3.986 18 C -0.572 4.572 19 H 0.072 0.928 20 C -0.190 4.190 21 N -0.566 5.566 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.194 1.194 26 C -0.174 4.174 27 C -0.004 4.004 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.229 0.771 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.163 0.837 40 H 0.141 0.859 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.076 0.924 44 H 0.141 0.859 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.143 3.137 22.209 26.516 hybrid contribution 0.583 -0.371 -1.678 1.815 sum -13.560 2.766 20.531 24.760 Atomic orbital electron populations 1.22413 0.94151 1.03606 1.03548 1.22713 0.94410 0.97344 0.84500 0.88052 1.86797 1.73047 1.33055 1.45256 1.22528 0.78016 1.03673 1.00856 1.56753 1.15838 1.32314 1.74175 1.21786 1.00093 0.80428 1.03227 1.23409 0.98920 0.98681 0.97777 1.23607 1.04451 0.99437 0.96750 1.00914 0.72207 0.72617 0.72951 1.93487 1.68136 1.47706 1.87491 1.93509 1.48896 1.86880 1.68634 1.30639 1.09212 1.14898 1.22903 1.20849 0.93074 0.92637 0.97226 1.21169 1.01177 1.03101 0.92428 1.20736 0.91973 0.91342 0.96468 1.18218 0.95768 0.96142 0.88479 1.21279 1.24757 1.11380 0.99790 0.92809 1.25884 0.98647 0.97632 0.96804 1.70062 1.44861 1.32084 1.09577 0.85502 0.79041 0.79095 0.77460 1.19292 1.20313 1.19371 1.21184 0.98413 1.00150 0.97698 1.20756 0.95536 0.93466 0.90669 0.89643 0.92238 0.91161 0.77070 0.88131 0.85971 0.84515 0.86680 0.85960 0.87466 0.88831 0.83692 0.85926 0.97182 0.97277 0.92394 0.85852 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.49 71.98 0.68 -1.07 16 2 C 0.07 1.02 3.64 30.60 0.11 1.13 16 3 H 0.10 1.57 5.08 -2.39 -0.01 1.56 16 4 O -0.57 -11.68 10.44 -148.98 -1.56 -13.24 16 5 C 0.07 1.01 4.69 86.38 0.40 1.41 16 6 N -0.96 -18.28 3.08 -493.39 -1.52 -19.80 16 7 C 0.05 0.84 6.35 44.99 0.29 1.13 16 8 C -0.15 -1.49 9.58 30.62 0.29 -1.19 16 9 C -0.20 -3.07 9.89 30.62 0.30 -2.77 16 10 S 2.72 74.07 5.68 -56.49 -0.32 73.75 16 11 O -0.98 -28.58 15.55 -128.00 -1.99 -30.57 16 12 O -0.99 -31.87 16.47 -128.00 -2.11 -33.98 16 13 C -0.69 -21.86 5.63 22.27 0.13 -21.73 16 14 C -0.02 -0.63 9.52 22.27 0.21 -0.42 16 15 C -0.16 -6.37 9.70 22.27 0.22 -6.16 16 16 C 0.00 -0.22 5.07 -19.86 -0.10 -0.32 16 17 C 0.05 2.72 5.10 29.10 0.15 2.87 16 18 C -0.53 -30.65 9.09 25.60 0.23 -30.42 16 19 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 20 C 0.01 0.52 5.46 84.65 0.46 0.99 16 21 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 22 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.16 -6.11 9.70 22.27 0.22 -5.89 16 27 C 0.01 0.49 7.24 22.27 0.16 0.65 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.38 5.91 8.13 -74.06 -0.60 5.31 16 32 H 0.10 1.40 6.82 -2.39 -0.02 1.39 16 33 H 0.12 0.94 6.45 -2.39 -0.02 0.93 16 34 H 0.14 2.33 7.56 -2.38 -0.02 2.31 16 35 H 0.12 0.80 6.24 -2.39 -0.01 0.79 16 36 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.67 5.85 -2.39 -0.01 1.66 16 39 H 0.15 4.14 7.78 -2.91 -0.02 4.11 16 40 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.01 0.56 8.09 -2.39 -0.02 0.54 16 42 H 0.01 0.51 8.09 -2.38 -0.02 0.49 16 43 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 45 H 0.15 4.01 6.48 -2.91 -0.02 3.99 16 Total: -1.00 -73.75 374.98 -1.02 -74.77 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.41 Total: 19.61 kcal Atomic # 6 Polarization: -65.55 SS G_CDS: 3.75 Total: -61.80 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.24 Total: -75.01 kcal Atomic # 8 Polarization: -72.13 SS G_CDS: -5.66 Total: -77.79 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 74.07 SS G_CDS: -0.32 Total: 73.75 kcal Total: -73.75 -1.02 -74.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885279121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.106 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds