Wall clock time and date at job start Tue Mar 31 2020 22:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46756 * 2 1 4 4 O 1.42894 * 109.47125 * 120.00228 * 2 1 3 5 5 C 1.52999 * 109.46987 * 240.00200 * 2 1 3 6 6 H 1.09000 * 109.99959 * 176.28439 * 5 2 1 7 7 C 1.54321 * 109.88296 * 297.38174 * 5 2 1 8 8 C 1.55446 * 102.96872 * 141.61330 * 7 5 2 9 9 C 1.54911 * 101.44910 * 324.51424 * 8 7 5 10 10 N 1.47029 * 109.88402 * 55.19138 * 5 2 1 11 11 S 1.65604 * 125.64656 * 61.65865 * 10 5 2 12 12 O 1.42093 * 106.39768 * 204.95865 * 11 10 5 13 13 O 1.42101 * 106.40153 * 337.87849 * 11 10 5 14 14 C 1.76193 * 107.21562 * 91.42193 * 11 10 5 15 15 C 1.38241 * 119.99871 * 273.84098 * 14 11 10 16 16 C 1.38236 * 119.99974 * 179.79125 * 15 14 11 17 17 C 1.38236 * 120.00214 * 0.46194 * 16 15 14 18 18 C 1.50695 * 120.00341 * 179.79239 * 17 16 15 19 19 C 1.50702 * 109.46921 * 269.97611 * 18 17 16 20 20 H 1.08001 * 120.00264 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99784 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00206 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47141 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46948 * 119.99722 * 23 21 19 26 26 H 1.48499 * 109.47437 * 239.99769 * 23 21 19 27 27 C 1.38240 * 119.99703 * 359.76219 * 17 16 15 28 28 C 1.38234 * 120.00474 * 94.11072 * 14 11 10 29 29 H 1.08998 * 109.46853 * 306.83477 * 1 2 3 30 30 H 1.09002 * 109.46863 * 66.83570 * 1 2 3 31 31 H 1.08999 * 109.47007 * 186.82871 * 1 2 3 32 32 H 0.96698 * 113.99970 * 300.00398 * 4 2 1 33 33 H 1.08999 * 110.71876 * 259.96928 * 7 5 2 34 34 H 1.08997 * 110.72530 * 23.07081 * 7 5 2 35 35 H 1.09004 * 111.11820 * 206.46627 * 8 7 5 36 36 H 1.09001 * 111.01565 * 82.52315 * 8 7 5 37 37 H 1.08997 * 110.36719 * 278.11301 * 9 8 7 38 38 H 1.09004 * 110.36469 * 155.90019 * 9 8 7 39 39 H 1.07996 * 120.00068 * 359.97438 * 15 14 11 40 40 H 1.08002 * 119.99671 * 180.24456 * 16 15 14 41 41 H 1.09000 * 109.47048 * 29.97404 * 18 17 16 42 42 H 1.09001 * 109.47217 * 149.97065 * 18 17 16 43 43 H 0.97005 * 120.00174 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.00051 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.99589 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 1 3.1279 -0.6691 -1.2918 7 6 1.5857 -2.1958 -1.2262 8 6 1.2427 -2.4786 -2.7158 9 6 0.6550 -1.1159 -3.1600 10 7 1.4626 -0.1053 -2.4530 11 16 1.6832 1.4636 -2.9349 12 8 0.5586 1.7992 -3.7359 13 8 2.0547 2.1919 -1.7727 14 6 3.0820 1.4883 -4.0060 15 6 4.3544 1.6065 -3.4785 16 6 5.4521 1.6215 -4.3185 17 6 5.2770 1.5281 -5.6866 18 6 6.4734 1.5492 -6.6026 19 6 6.7817 2.9716 -6.9935 20 1 6.1719 3.7794 -6.6167 21 6 7.8415 3.2415 -7.8331 22 7 8.5837 2.2577 -8.2924 23 14 8.2232 5.0046 -8.3183 24 1 7.2472 5.9182 -7.6719 25 1 9.5965 5.3538 -7.8744 26 1 8.1297 5.1433 -9.7939 27 6 4.0044 1.4146 -6.2143 28 6 2.9069 1.3952 -5.3740 29 1 -0.3633 0.6161 0.8225 30 1 -0.3633 0.4043 -0.9448 31 1 -0.3633 -1.0204 0.1222 32 1 1.7210 -0.2702 1.9979 33 1 2.3944 -2.8433 -0.8874 34 1 0.7054 -2.3184 -0.5953 35 1 0.5003 -3.2717 -2.8042 36 1 2.1406 -2.7208 -3.2844 37 1 -0.3915 -1.0397 -2.8646 38 1 0.7538 -0.9936 -4.2386 39 1 4.4910 1.6840 -2.4100 40 1 6.4464 1.7098 -3.9062 41 1 7.3328 1.1195 -6.0878 42 1 6.2565 0.9653 -7.4971 43 1 9.3295 2.4477 -8.8828 44 1 3.8675 1.3420 -7.2831 45 1 1.9126 1.3069 -5.7863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885300603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:30 Heat of formation + Delta-G solvation = -104.060884 kcal Electronic energy + Delta-G solvation = -27949.249342 eV Core-core repulsion = 24058.287258 eV Total energy + Delta-G solvation = -3890.962084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.62104 -38.81909 -37.28441 -36.63465 -35.83823 -33.69516 -31.60141 -31.48255 -31.06528 -30.59838 -28.36775 -27.44094 -23.96561 -23.70413 -22.39504 -22.06620 -20.99754 -20.74327 -18.84062 -17.78577 -17.49864 -17.23345 -16.52892 -16.42707 -15.70997 -15.12665 -14.87679 -14.68520 -14.40993 -14.38302 -14.04269 -13.78873 -13.47120 -13.28426 -13.12563 -12.85311 -12.59639 -12.27133 -12.22424 -12.17181 -12.03927 -11.95150 -11.73381 -11.70320 -11.50494 -11.41116 -11.10686 -10.97924 -10.94270 -10.78653 -10.52477 -10.50742 -10.01893 -9.76320 -9.66956 -9.23487 -8.61143 -8.55465 -8.39710 -6.18436 -4.23468 0.36097 1.30613 1.77563 2.89648 3.22366 3.30430 3.35714 3.67221 3.92585 4.06617 4.15575 4.34249 4.36949 4.53433 4.64928 4.82907 4.85380 5.06952 5.13680 5.17786 5.20977 5.21403 5.26000 5.41053 5.55523 5.62281 5.63957 5.69564 5.70832 5.71416 5.76459 5.89272 5.91126 5.93178 6.11965 6.22853 6.23476 6.30886 6.50357 6.81817 6.88867 7.27720 7.40089 7.41439 7.57325 7.76823 8.11828 8.81578 9.41663 10.91625 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.002777 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.145694 B =10080.652484 C =10160.125484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.071 3.929 3 H 0.088 0.912 4 O -0.564 6.564 5 C 0.160 3.840 6 H 0.083 0.917 7 C -0.115 4.115 8 C -0.133 4.133 9 C 0.121 3.879 10 N -1.005 6.005 11 S 2.706 3.294 12 O -0.959 6.959 13 O -0.958 6.958 14 C -0.704 4.704 15 C -0.022 4.022 16 C -0.145 4.145 17 C 0.027 3.973 18 C 0.039 3.961 19 C -0.517 4.517 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.145 4.145 28 C -0.024 4.024 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.380 0.620 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.129 0.871 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.287 -10.142 15.200 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.011 3.989 3 H 0.106 0.894 4 O -0.369 6.369 5 C 0.054 3.946 6 H 0.101 0.899 7 C -0.154 4.154 8 C -0.172 4.172 9 C -0.003 4.003 10 N -0.843 5.843 11 S 2.802 3.198 12 O -0.950 6.950 13 O -0.949 6.949 14 C -0.794 4.794 15 C -0.041 4.041 16 C -0.164 4.164 17 C 0.027 3.973 18 C 0.002 3.998 19 C -0.555 4.555 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.164 4.164 28 C -0.044 4.044 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.227 0.773 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.385 -9.761 14.867 24.182 hybrid contribution 0.686 1.162 -0.424 1.414 sum -15.699 -8.599 14.443 23.000 Atomic orbital electron populations 1.22515 0.96524 1.02623 1.02553 1.22487 0.93422 0.97243 0.85772 0.89436 1.86412 1.77129 1.57577 1.15749 1.21096 0.97915 0.93275 0.82353 0.89850 1.22657 1.02419 0.93888 0.96443 1.22889 1.01736 0.96346 0.96254 1.22009 0.94560 0.87037 0.96731 1.58720 1.62797 1.29443 1.33302 1.01335 0.73937 0.71118 0.73419 1.93555 1.49572 1.81198 1.70652 1.93526 1.84649 1.68500 1.48180 1.30348 1.15984 1.23828 1.09252 1.20744 0.91069 0.92788 0.99532 1.21248 0.98766 1.02814 0.93567 1.21125 0.96811 0.84706 0.94654 1.18546 0.89497 0.98342 0.93393 1.21009 1.13887 0.91356 1.29274 0.92229 1.25006 0.95826 0.97616 0.95711 1.69956 1.18520 1.31293 1.33185 0.86423 0.78338 0.84306 0.78355 1.19565 1.20783 1.20782 1.21249 0.92079 1.02928 1.00138 1.20782 0.99345 0.92968 0.91276 0.92279 0.91862 0.91422 0.77295 0.90007 0.90128 0.89936 0.90290 0.91129 0.90325 0.85449 0.85298 0.94684 0.94686 0.92669 0.85286 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.10 37.16 0.34 -1.26 16 2 C 0.07 0.71 3.19 -26.73 -0.09 0.63 16 3 H 0.09 1.04 5.96 -51.93 -0.31 0.73 16 4 O -0.56 -5.04 12.90 -35.23 -0.45 -5.50 16 5 C 0.16 1.62 3.12 -66.95 -0.21 1.41 16 6 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 7 C -0.12 -0.91 5.91 -24.74 -0.15 -1.06 16 8 C -0.13 -0.95 7.11 -24.42 -0.17 -1.12 16 9 C 0.12 1.07 6.93 -2.53 -0.02 1.05 16 10 N -1.00 -11.03 2.34 -104.42 -0.24 -11.28 16 11 S 2.71 38.66 5.89 -107.50 -0.63 38.03 16 12 O -0.96 -15.57 16.79 -57.17 -0.96 -16.53 16 13 O -0.96 -15.09 14.61 -57.17 -0.84 -15.92 16 14 C -0.70 -11.35 5.97 -39.58 -0.24 -11.59 16 15 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 16 C -0.15 -2.72 9.70 -39.58 -0.38 -3.10 16 17 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 18 C 0.04 0.96 5.10 -29.04 -0.15 0.81 16 19 C -0.52 -14.06 9.09 -34.44 -0.31 -14.37 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 23 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C -0.15 -2.71 9.70 -39.58 -0.38 -3.10 16 28 C -0.02 -0.40 9.53 -39.58 -0.38 -0.78 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.61 7.22 -51.93 -0.38 0.23 16 31 H 0.07 0.50 6.46 -51.93 -0.34 0.17 16 32 H 0.38 1.94 9.08 45.56 0.41 2.35 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.59 6.02 -51.93 -0.31 0.28 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.13 1.82 7.71 -52.49 -0.40 1.41 16 40 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 45 H 0.13 1.85 7.53 -52.49 -0.40 1.46 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -32.75 376.51 -10.78 -43.53 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.90 Total: 2.28 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: -3.14 Total: -31.61 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.49 Total: -36.07 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -2.25 Total: -37.95 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 38.66 SS G_CDS: -0.63 Total: 38.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.75 -10.78 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885300603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.532 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds