Wall clock time and date at job start Tue Mar 31 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46756 * 2 1 4 4 O 1.42894 * 109.47125 * 120.00228 * 2 1 3 5 5 C 1.52999 * 109.46987 * 240.00200 * 2 1 3 6 6 H 1.09000 * 109.99959 * 176.28439 * 5 2 1 7 7 C 1.54321 * 109.88296 * 297.38174 * 5 2 1 8 8 C 1.55446 * 102.96872 * 141.61330 * 7 5 2 9 9 C 1.54911 * 101.44910 * 324.51424 * 8 7 5 10 10 N 1.47029 * 109.88402 * 55.19138 * 5 2 1 11 11 S 1.65604 * 125.64656 * 61.65865 * 10 5 2 12 12 O 1.42093 * 106.39768 * 204.95865 * 11 10 5 13 13 O 1.42101 * 106.40153 * 337.87849 * 11 10 5 14 14 C 1.76193 * 107.21562 * 91.42193 * 11 10 5 15 15 C 1.38241 * 119.99871 * 273.84098 * 14 11 10 16 16 C 1.38236 * 119.99974 * 179.79125 * 15 14 11 17 17 C 1.38236 * 120.00214 * 0.46194 * 16 15 14 18 18 C 1.50695 * 120.00341 * 179.79239 * 17 16 15 19 19 C 1.50702 * 109.46921 * 269.97611 * 18 17 16 20 20 H 1.08001 * 120.00264 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99784 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00206 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47141 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46948 * 119.99722 * 23 21 19 26 26 H 1.48499 * 109.47437 * 239.99769 * 23 21 19 27 27 C 1.38240 * 119.99703 * 359.76219 * 17 16 15 28 28 C 1.38234 * 120.00474 * 94.11072 * 14 11 10 29 29 H 1.08998 * 109.46853 * 306.83477 * 1 2 3 30 30 H 1.09002 * 109.46863 * 66.83570 * 1 2 3 31 31 H 1.08999 * 109.47007 * 186.82871 * 1 2 3 32 32 H 0.96698 * 113.99970 * 300.00398 * 4 2 1 33 33 H 1.08999 * 110.71876 * 259.96928 * 7 5 2 34 34 H 1.08997 * 110.72530 * 23.07081 * 7 5 2 35 35 H 1.09004 * 111.11820 * 206.46627 * 8 7 5 36 36 H 1.09001 * 111.01565 * 82.52315 * 8 7 5 37 37 H 1.08997 * 110.36719 * 278.11301 * 9 8 7 38 38 H 1.09004 * 110.36469 * 155.90019 * 9 8 7 39 39 H 1.07996 * 120.00068 * 359.97438 * 15 14 11 40 40 H 1.08002 * 119.99671 * 180.24456 * 16 15 14 41 41 H 1.09000 * 109.47048 * 29.97404 * 18 17 16 42 42 H 1.09001 * 109.47217 * 149.97065 * 18 17 16 43 43 H 0.97005 * 120.00174 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.00051 * 179.97438 * 27 17 16 45 45 H 1.08001 * 119.99589 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 1 3.1279 -0.6691 -1.2918 7 6 1.5857 -2.1958 -1.2262 8 6 1.2427 -2.4786 -2.7158 9 6 0.6550 -1.1159 -3.1600 10 7 1.4626 -0.1053 -2.4530 11 16 1.6832 1.4636 -2.9349 12 8 0.5586 1.7992 -3.7359 13 8 2.0547 2.1919 -1.7727 14 6 3.0820 1.4883 -4.0060 15 6 4.3544 1.6065 -3.4785 16 6 5.4521 1.6215 -4.3185 17 6 5.2770 1.5281 -5.6866 18 6 6.4734 1.5492 -6.6026 19 6 6.7817 2.9716 -6.9935 20 1 6.1719 3.7794 -6.6167 21 6 7.8415 3.2415 -7.8331 22 7 8.5837 2.2577 -8.2924 23 14 8.2232 5.0046 -8.3183 24 1 7.2472 5.9182 -7.6719 25 1 9.5965 5.3538 -7.8744 26 1 8.1297 5.1433 -9.7939 27 6 4.0044 1.4146 -6.2143 28 6 2.9069 1.3952 -5.3740 29 1 -0.3633 0.6161 0.8225 30 1 -0.3633 0.4043 -0.9448 31 1 -0.3633 -1.0204 0.1222 32 1 1.7210 -0.2702 1.9979 33 1 2.3944 -2.8433 -0.8874 34 1 0.7054 -2.3184 -0.5953 35 1 0.5003 -3.2717 -2.8042 36 1 2.1406 -2.7208 -3.2844 37 1 -0.3915 -1.0397 -2.8646 38 1 0.7538 -0.9936 -4.2386 39 1 4.4910 1.6840 -2.4100 40 1 6.4464 1.7098 -3.9062 41 1 7.3328 1.1195 -6.0878 42 1 6.2565 0.9653 -7.4971 43 1 9.3295 2.4477 -8.8828 44 1 3.8675 1.3420 -7.2831 45 1 1.9126 1.3069 -5.7863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885300603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:29 Heat of formation + Delta-G solvation = -126.192150 kcal Electronic energy + Delta-G solvation = -27950.209026 eV Core-core repulsion = 24058.287258 eV Total energy + Delta-G solvation = -3891.921768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35037 -40.27458 -38.46908 -37.36239 -37.04634 -35.62216 -33.35577 -32.17731 -32.00681 -31.83334 -29.28285 -29.03216 -25.62589 -24.63934 -23.78763 -22.82600 -22.42605 -21.65109 -19.96585 -18.90142 -18.59591 -18.45366 -17.95465 -17.34973 -16.92732 -16.79250 -16.02363 -15.96882 -15.60964 -15.32219 -15.21234 -14.80888 -14.64261 -14.51064 -14.20443 -13.96821 -13.94256 -13.44085 -13.43869 -13.31682 -13.25418 -13.22779 -12.89492 -12.83195 -12.70459 -12.67172 -12.49339 -12.18176 -12.08758 -12.02507 -11.72495 -11.67166 -11.48739 -11.40015 -10.73845 -10.67424 -10.14049 -10.01134 -9.94425 -8.28834 -6.41703 -0.78338 -0.11095 0.35073 1.36295 1.37726 1.50481 1.85076 2.33286 2.50797 2.70917 3.03833 3.05303 3.29043 3.67816 3.70737 3.84041 3.91525 3.98479 4.11973 4.14893 4.23177 4.35006 4.43249 4.43903 4.50827 4.62238 4.76736 4.77025 4.86377 4.93406 4.97602 5.00238 5.03251 5.06089 5.09869 5.20710 5.23830 5.24062 5.28670 5.29283 5.43005 5.52599 5.65399 5.82367 5.88267 6.07482 6.70143 6.89057 7.27566 8.81486 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.002777 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.145694 B =10080.652484 C =10160.125484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.072 3.928 3 H 0.065 0.935 4 O -0.570 6.570 5 C 0.150 3.850 6 H 0.075 0.925 7 C -0.109 4.109 8 C -0.125 4.125 9 C 0.108 3.892 10 N -0.998 5.998 11 S 2.728 3.272 12 O -0.975 6.975 13 O -0.972 6.972 14 C -0.704 4.704 15 C -0.019 4.019 16 C -0.154 4.154 17 C -0.002 4.002 18 C 0.048 3.952 19 C -0.534 4.534 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.965 3.035 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.274 1.274 27 C -0.153 4.153 28 C -0.021 4.021 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.396 0.604 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.152 0.848 40 H 0.130 0.870 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.268 0.732 44 H 0.132 0.868 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.246 -10.532 16.503 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.011 3.989 3 H 0.083 0.917 4 O -0.378 6.378 5 C 0.043 3.957 6 H 0.093 0.907 7 C -0.148 4.148 8 C -0.164 4.164 9 C -0.015 4.015 10 N -0.838 5.838 11 S 2.821 3.179 12 O -0.966 6.966 13 O -0.962 6.962 14 C -0.791 4.791 15 C -0.038 4.038 16 C -0.173 4.173 17 C -0.002 4.002 18 C 0.012 3.988 19 C -0.572 4.572 20 H 0.071 0.929 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.172 4.172 28 C -0.040 4.040 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.246 0.754 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.169 0.831 40 H 0.148 0.852 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.150 0.850 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.330 -10.143 16.165 26.461 hybrid contribution 1.205 1.195 -0.700 1.837 sum -17.125 -8.947 15.465 24.748 Atomic orbital electron populations 1.22510 0.95394 1.03768 1.02424 1.22349 0.94297 0.96039 0.86171 0.91665 1.86377 1.77378 1.57676 1.16346 1.21294 0.97607 0.94786 0.81969 0.90672 1.22654 1.02917 0.92042 0.97207 1.22890 1.02165 0.96008 0.95366 1.22346 0.95152 0.87158 0.96890 1.58443 1.62775 1.28832 1.33734 1.00684 0.72891 0.71758 0.72560 1.93531 1.49698 1.82155 1.71202 1.93513 1.84657 1.69840 1.48234 1.30867 1.16827 1.21673 1.09689 1.20975 0.90594 0.91778 1.00475 1.21308 0.99783 1.03160 0.93063 1.20835 0.96215 0.88169 0.95010 1.18268 0.90595 0.96793 0.93191 1.21313 1.13987 0.92490 1.29396 0.92853 1.25864 0.95625 1.01809 0.95621 1.70059 1.19091 1.33410 1.33857 0.85398 0.78255 0.79207 0.78221 1.19246 1.20012 1.19964 1.21319 0.91951 1.03159 1.00768 1.21035 0.99762 0.91886 0.91320 0.91298 0.92887 0.89888 0.75422 0.89622 0.89096 0.87448 0.90741 0.89595 0.90035 0.83087 0.85168 0.96804 0.96710 0.92335 0.84995 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 9.10 71.98 0.66 -2.08 16 2 C 0.07 1.31 3.19 30.60 0.10 1.41 16 3 H 0.07 1.48 5.96 -2.39 -0.01 1.46 16 4 O -0.57 -9.03 12.90 -148.98 -1.92 -10.95 16 5 C 0.15 2.74 3.12 45.34 0.14 2.89 16 6 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 7 C -0.11 -1.42 5.91 31.88 0.19 -1.23 16 8 C -0.13 -1.41 7.11 32.09 0.23 -1.18 16 9 C 0.11 1.61 6.93 86.86 0.60 2.22 16 10 N -1.00 -19.95 2.34 -484.27 -1.13 -21.08 16 11 S 2.73 73.67 5.89 -56.49 -0.33 73.34 16 12 O -0.98 -29.86 16.79 -128.00 -2.15 -32.01 16 13 O -0.97 -29.40 14.61 -128.00 -1.87 -31.27 16 14 C -0.70 -21.87 5.97 22.27 0.13 -21.74 16 15 C -0.02 -0.62 9.52 22.27 0.21 -0.41 16 16 C -0.15 -5.89 9.70 22.27 0.22 -5.68 16 17 C 0.00 -0.08 5.07 -19.87 -0.10 -0.18 16 18 C 0.05 2.50 5.10 29.10 0.15 2.65 16 19 C -0.53 -29.92 9.09 25.60 0.23 -29.69 16 20 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 21 C 0.01 0.55 5.46 84.65 0.46 1.01 16 22 N -0.92 -54.26 13.29 21.45 0.28 -53.97 16 23 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C -0.15 -5.79 9.70 22.27 0.22 -5.58 16 28 C -0.02 -0.67 9.53 22.27 0.21 -0.46 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.90 7.22 -2.39 -0.02 0.89 16 31 H 0.08 0.97 6.46 -2.39 -0.02 0.95 16 32 H 0.40 3.21 9.08 -74.06 -0.67 2.54 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.01 6.02 -2.39 -0.01 1.00 16 35 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.15 4.13 7.71 -2.91 -0.02 4.10 16 40 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 41 H 0.01 0.75 8.09 -2.39 -0.02 0.73 16 42 H 0.01 0.79 8.09 -2.39 -0.02 0.77 16 43 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 44 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 45 H 0.16 4.14 7.53 -2.91 -0.02 4.12 16 Total: -1.00 -70.87 376.51 -1.12 -71.99 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.33 Total: 16.22 kcal Atomic # 6 Polarization: -61.70 SS G_CDS: 3.65 Total: -58.06 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -0.85 Total: -75.05 kcal Atomic # 8 Polarization: -68.28 SS G_CDS: -5.94 Total: -74.22 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 73.67 SS G_CDS: -0.33 Total: 73.34 kcal Total: -70.87 -1.12 -71.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885300603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.199 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds