Wall clock time and date at job start Tue Mar 31 2020 22:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47570 * 2 1 4 4 C 1.46501 * 120.00173 * 270.00272 * 3 2 1 5 5 C 1.52999 * 109.46956 * 269.99787 * 4 3 2 6 6 C 1.34779 * 120.00029 * 89.99660 * 3 2 1 7 7 O 1.21278 * 120.00150 * 0.02562 * 6 3 2 8 8 C 1.50703 * 119.99900 * 180.02562 * 6 3 2 9 9 H 1.08996 * 109.47312 * 40.00145 * 8 6 3 10 10 C 1.50700 * 109.46781 * 279.99723 * 8 6 3 11 11 C 1.38227 * 120.00364 * 299.72725 * 10 8 6 12 12 C 1.38241 * 120.00017 * 179.78625 * 11 10 8 13 13 C 1.38230 * 119.99615 * 0.44551 * 12 11 10 14 14 C 1.38228 * 120.00272 * 359.81054 * 13 12 11 15 15 C 1.38229 * 120.00158 * 359.97438 * 14 13 12 16 16 S 1.81400 * 109.46859 * 160.00012 * 8 6 3 17 17 O 1.42105 * 108.57777 * 65.51278 * 16 8 6 18 18 O 1.42097 * 108.58116 * 294.48448 * 16 8 6 19 19 C 1.81400 * 101.91926 * 179.97438 * 16 8 6 20 20 C 1.50706 * 109.47256 * 179.97438 * 19 16 8 21 21 H 1.07999 * 119.99515 * 0.02562 * 20 19 16 22 22 C 1.37870 * 120.00176 * 180.02562 * 20 19 16 23 23 N 1.31514 * 120.00200 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00139 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47145 * 89.99836 * 24 22 20 26 26 H 1.48496 * 109.47547 * 210.00333 * 24 22 20 27 27 H 1.48499 * 109.47030 * 330.00237 * 24 22 20 28 28 H 1.08999 * 109.47461 * 59.99779 * 1 2 3 29 29 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46950 * 300.00047 * 1 2 3 31 31 H 1.09004 * 109.47242 * 239.99492 * 2 1 3 32 32 H 1.09004 * 109.46828 * 119.99939 * 2 1 3 33 33 H 1.08998 * 109.46996 * 29.99855 * 4 3 2 34 34 H 1.08998 * 109.47447 * 149.99564 * 4 3 2 35 35 H 1.09005 * 109.46944 * 299.99826 * 5 4 3 36 36 H 1.08998 * 109.47225 * 59.99641 * 5 4 3 37 37 H 1.08998 * 109.47011 * 180.02562 * 5 4 3 38 38 H 1.08001 * 119.99821 * 0.02562 * 11 10 8 39 39 H 1.07999 * 119.99519 * 180.27497 * 12 11 10 40 40 H 1.08002 * 119.99690 * 179.83036 * 13 12 11 41 41 H 1.08007 * 120.00327 * 180.02562 * 14 13 12 42 42 H 1.08009 * 120.00342 * 180.02562 * 15 14 13 43 43 H 1.09001 * 109.46713 * 60.00236 * 19 16 8 44 44 H 1.09000 * 109.47712 * 300.00545 * 19 16 8 45 45 H 0.96999 * 120.00061 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 6 2.2430 2.0165 1.1672 7 8 2.0412 1.4447 2.2175 8 6 2.7449 3.4375 1.1672 9 1 2.2430 4.0001 0.3801 10 6 4.2315 3.4451 0.9203 11 6 5.0810 2.7958 1.7964 12 6 6.4443 2.7991 1.5674 13 6 6.9588 3.4594 0.4674 14 6 6.1097 4.1131 -0.4058 15 6 4.7461 4.1061 -0.1793 16 16 2.3950 4.2023 2.7744 17 8 3.1586 3.5344 3.7695 18 8 0.9862 4.3018 2.9314 19 6 3.0714 5.8705 2.5507 20 6 2.8662 6.6692 3.8121 21 1 2.3781 6.2181 4.6634 22 6 3.3016 7.9756 3.8794 23 7 3.1229 8.6724 4.9804 24 14 4.1465 8.7556 2.4073 25 1 3.1301 9.4003 1.5374 26 1 5.1160 9.7776 2.8770 27 1 4.8650 7.7089 1.6370 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2154 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 3.8894 2.3455 -2.6541 38 1 4.6793 2.2827 2.6576 39 1 7.1076 2.2880 2.2495 40 1 8.0241 3.4642 0.2900 41 1 6.5117 4.6287 -1.2656 42 1 4.0827 4.6165 -0.8618 43 1 2.5601 6.3618 1.7228 44 1 4.1371 5.8042 2.3315 45 1 3.4296 9.5914 5.0278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905264874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:39 Heat of formation + Delta-G solvation = -70.262570 kcal Electronic energy + Delta-G solvation = -29276.100889 eV Core-core repulsion = 25386.604410 eV Total energy + Delta-G solvation = -3889.496479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.64031 -38.98141 -36.46398 -36.11129 -35.11132 -33.65717 -33.21364 -31.93320 -30.93851 -29.79949 -29.75200 -27.77271 -23.80880 -23.70104 -22.93537 -22.67010 -21.77412 -19.31733 -18.14275 -17.52168 -17.47224 -16.94017 -16.65843 -15.86211 -15.56656 -15.33352 -14.97208 -14.73711 -14.54819 -14.28639 -14.11565 -13.90732 -13.60675 -13.29284 -13.22052 -12.91831 -12.79233 -12.68190 -12.63595 -12.48550 -12.16642 -11.79439 -11.59820 -11.54122 -11.29421 -11.21414 -11.18818 -11.11769 -11.02334 -10.85940 -10.50297 -10.25971 -10.07990 -9.83925 -9.38383 -8.92022 -8.87429 -8.81559 -8.64335 -6.28495 -4.36846 0.60460 1.25790 1.39088 2.43655 2.76764 3.14149 3.21667 3.23413 3.54791 3.79971 4.09435 4.19392 4.23105 4.52855 4.68424 4.76961 4.88710 4.89660 4.90689 4.98016 5.00852 5.11882 5.14750 5.17539 5.24541 5.32354 5.41388 5.45705 5.54756 5.59675 5.63076 5.76707 5.86727 6.03376 6.05039 6.06803 6.17261 6.30951 6.35215 6.39403 6.47454 6.53983 6.93716 7.09187 7.20270 7.93276 8.05260 8.65629 9.25554 10.82672 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.005238 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.637575 B = 5344.321924 C = 6476.566282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 N -0.603 5.603 4 C 0.103 3.897 5 C -0.189 4.189 6 C 0.555 3.445 7 O -0.519 6.519 8 C -0.591 4.591 9 H 0.155 0.845 10 C -0.075 4.075 11 C -0.100 4.100 12 C -0.114 4.114 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.095 4.095 16 S 2.438 3.562 17 O -0.918 6.918 18 O -0.938 6.938 19 C -0.451 4.451 20 C -0.528 4.528 21 H 0.088 0.912 22 C 0.090 3.910 23 N -0.880 5.880 24 Si 0.877 3.123 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.148 0.852 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -13.421 -18.883 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.336 5.336 4 C -0.019 4.019 5 C -0.247 4.247 6 C 0.341 3.659 7 O -0.395 6.395 8 C -0.693 4.693 9 H 0.173 0.827 10 C -0.076 4.076 11 C -0.118 4.118 12 C -0.132 4.132 13 C -0.129 4.129 14 C -0.143 4.143 15 C -0.114 4.114 16 S 2.617 3.383 17 O -0.915 6.915 18 O -0.935 6.935 19 C -0.585 4.585 20 C -0.566 4.566 21 H 0.106 0.894 22 C -0.116 4.116 23 N -0.516 5.516 24 Si 0.703 3.297 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.184 1.184 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.166 0.834 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.579 -14.027 -17.557 22.755 hybrid contribution 0.726 0.972 -1.709 2.095 sum 4.305 -13.055 -19.266 23.667 Atomic orbital electron populations 1.22163 0.95637 1.02332 1.02772 1.21472 0.94600 0.81789 1.03307 1.47844 1.65680 1.14351 1.05729 1.21627 0.97345 0.97938 0.85032 1.22581 0.97192 1.02288 1.02651 1.19151 0.76695 0.85916 0.84109 1.90844 1.51339 1.66977 1.30331 1.30113 1.01907 1.05865 1.31462 0.82712 1.18555 0.89546 1.01819 0.97699 1.21575 0.93816 0.97605 0.98827 1.21156 0.94902 0.99583 0.97545 1.21236 0.99810 0.97099 0.94734 1.21059 0.93015 1.00174 1.00101 1.20985 0.95892 0.98154 0.96356 1.08208 0.76109 0.78878 0.75137 1.93465 1.72497 1.74011 1.51521 1.93487 1.29757 1.86940 1.83311 1.28006 1.07915 1.15533 1.07037 1.20078 1.42595 0.97670 0.96265 0.89362 1.24849 0.94398 0.96282 0.96117 1.69862 1.44995 1.10123 1.26573 0.86800 0.80144 0.79713 0.83076 1.19587 1.20570 1.18394 0.92550 0.91467 0.91690 0.90485 0.89545 0.90180 0.90174 0.89966 0.92654 0.91522 0.83413 0.85430 0.85883 0.85698 0.85536 0.90356 0.89329 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.11 1.15 6.13 -4.05 -0.02 1.13 16 3 N -0.60 -7.38 2.47 -173.69 -0.43 -7.81 16 4 C 0.10 0.92 5.84 -4.04 -0.02 0.89 16 5 C -0.19 -1.56 9.48 37.16 0.35 -1.21 16 6 C 0.56 9.15 6.49 -10.98 -0.07 9.07 16 7 O -0.52 -10.51 15.23 -3.36 -0.05 -10.56 16 8 C -0.59 -9.47 2.04 -29.03 -0.06 -9.52 16 9 H 0.16 1.87 6.04 -51.93 -0.31 1.55 16 10 C -0.08 -1.10 2.41 -104.63 -0.25 -1.35 16 11 C -0.10 -1.56 8.44 -39.58 -0.33 -1.90 16 12 C -0.11 -1.48 10.05 -39.58 -0.40 -1.87 16 13 C -0.11 -1.23 10.05 -39.59 -0.40 -1.62 16 14 C -0.13 -1.35 9.90 -39.59 -0.39 -1.74 16 15 C -0.10 -1.12 6.85 -39.58 -0.27 -1.39 16 16 S 2.44 53.79 3.56 -107.50 -0.38 53.41 16 17 O -0.92 -22.52 15.29 -62.66 -0.96 -23.48 16 18 O -0.94 -23.44 18.10 -57.83 -1.05 -24.49 16 19 C -0.45 -10.28 4.31 36.01 0.16 -10.13 16 20 C -0.53 -15.05 9.68 -34.44 -0.33 -15.38 16 21 H 0.09 2.76 7.96 -52.49 -0.42 2.35 16 22 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 23 N -0.88 -26.37 13.96 55.43 0.77 -25.60 16 24 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.09 1.03 7.42 -51.93 -0.39 0.64 16 33 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.08 0.66 5.94 -51.93 -0.31 0.36 16 35 H 0.08 0.82 3.69 -51.93 -0.19 0.63 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.15 2.63 6.59 -52.49 -0.35 2.28 16 39 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.13 1.15 7.95 -52.48 -0.42 0.74 16 43 H 0.08 1.57 7.57 -51.92 -0.39 1.17 16 44 H 0.09 1.88 6.77 -51.92 -0.35 1.53 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -37.10 373.48 -9.41 -46.52 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.51 Total: 4.69 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: -1.77 Total: -33.86 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.34 Total: -33.41 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -2.06 Total: -58.54 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Atomic # 16 Polarization: 53.79 SS G_CDS: -0.38 Total: 53.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.10 -9.41 -46.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905264874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.743 kcal (2) G-P(sol) polarization free energy of solvation -37.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds