Wall clock time and date at job start Tue Mar 31 2020 22:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47570 * 2 1 4 4 C 1.46501 * 120.00173 * 270.00272 * 3 2 1 5 5 C 1.52999 * 109.46956 * 269.99787 * 4 3 2 6 6 C 1.34779 * 120.00029 * 89.99660 * 3 2 1 7 7 O 1.21278 * 120.00150 * 0.02562 * 6 3 2 8 8 C 1.50703 * 119.99900 * 180.02562 * 6 3 2 9 9 H 1.08996 * 109.47312 * 40.00145 * 8 6 3 10 10 C 1.50700 * 109.46781 * 279.99723 * 8 6 3 11 11 C 1.38227 * 120.00364 * 299.72725 * 10 8 6 12 12 C 1.38241 * 120.00017 * 179.78625 * 11 10 8 13 13 C 1.38230 * 119.99615 * 0.44551 * 12 11 10 14 14 C 1.38228 * 120.00272 * 359.81054 * 13 12 11 15 15 C 1.38229 * 120.00158 * 359.97438 * 14 13 12 16 16 S 1.81400 * 109.46859 * 160.00012 * 8 6 3 17 17 O 1.42105 * 108.57777 * 65.51278 * 16 8 6 18 18 O 1.42097 * 108.58116 * 294.48448 * 16 8 6 19 19 C 1.81400 * 101.91926 * 179.97438 * 16 8 6 20 20 C 1.50706 * 109.47256 * 179.97438 * 19 16 8 21 21 H 1.07999 * 119.99515 * 0.02562 * 20 19 16 22 22 C 1.37870 * 120.00176 * 180.02562 * 20 19 16 23 23 N 1.31514 * 120.00200 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00139 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47145 * 89.99836 * 24 22 20 26 26 H 1.48496 * 109.47547 * 210.00333 * 24 22 20 27 27 H 1.48499 * 109.47030 * 330.00237 * 24 22 20 28 28 H 1.08999 * 109.47461 * 59.99779 * 1 2 3 29 29 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46950 * 300.00047 * 1 2 3 31 31 H 1.09004 * 109.47242 * 239.99492 * 2 1 3 32 32 H 1.09004 * 109.46828 * 119.99939 * 2 1 3 33 33 H 1.08998 * 109.46996 * 29.99855 * 4 3 2 34 34 H 1.08998 * 109.47447 * 149.99564 * 4 3 2 35 35 H 1.09005 * 109.46944 * 299.99826 * 5 4 3 36 36 H 1.08998 * 109.47225 * 59.99641 * 5 4 3 37 37 H 1.08998 * 109.47011 * 180.02562 * 5 4 3 38 38 H 1.08001 * 119.99821 * 0.02562 * 11 10 8 39 39 H 1.07999 * 119.99519 * 180.27497 * 12 11 10 40 40 H 1.08002 * 119.99690 * 179.83036 * 13 12 11 41 41 H 1.08007 * 120.00327 * 180.02562 * 14 13 12 42 42 H 1.08009 * 120.00342 * 180.02562 * 15 14 13 43 43 H 1.09001 * 109.46713 * 60.00236 * 19 16 8 44 44 H 1.09000 * 109.47712 * 300.00545 * 19 16 8 45 45 H 0.96999 * 120.00061 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 6 2.2430 2.0165 1.1672 7 8 2.0412 1.4447 2.2175 8 6 2.7449 3.4375 1.1672 9 1 2.2430 4.0001 0.3801 10 6 4.2315 3.4451 0.9203 11 6 5.0810 2.7958 1.7964 12 6 6.4443 2.7991 1.5674 13 6 6.9588 3.4594 0.4674 14 6 6.1097 4.1131 -0.4058 15 6 4.7461 4.1061 -0.1793 16 16 2.3950 4.2023 2.7744 17 8 3.1586 3.5344 3.7695 18 8 0.9862 4.3018 2.9314 19 6 3.0714 5.8705 2.5507 20 6 2.8662 6.6692 3.8121 21 1 2.3781 6.2181 4.6634 22 6 3.3016 7.9756 3.8794 23 7 3.1229 8.6724 4.9804 24 14 4.1465 8.7556 2.4073 25 1 3.1301 9.4003 1.5374 26 1 5.1160 9.7776 2.8770 27 1 4.8650 7.7089 1.6370 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2154 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 3.8894 2.3455 -2.6541 38 1 4.6793 2.2827 2.6576 39 1 7.1076 2.2880 2.2495 40 1 8.0241 3.4642 0.2900 41 1 6.5117 4.6287 -1.2656 42 1 4.0827 4.6165 -0.8618 43 1 2.5601 6.3618 1.7228 44 1 4.1371 5.8042 2.3315 45 1 3.4296 9.5914 5.0278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905264874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:39 Heat of formation + Delta-G solvation = -97.716346 kcal Electronic energy + Delta-G solvation = -29277.291374 eV Core-core repulsion = 25386.604410 eV Total energy + Delta-G solvation = -3890.686964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74715 -39.98095 -37.95959 -37.50452 -36.91004 -35.33452 -34.66922 -32.75590 -31.89949 -31.71023 -30.66490 -28.82044 -25.28858 -24.51287 -24.37415 -23.61352 -22.75431 -20.50835 -19.74397 -19.31461 -18.68473 -18.03358 -17.97932 -17.22865 -16.98510 -16.75891 -16.42523 -16.01174 -15.85219 -15.51702 -15.02621 -14.79178 -14.71142 -14.66196 -14.33784 -14.26551 -14.13162 -13.75308 -13.68864 -13.52306 -13.46303 -13.05501 -12.99549 -12.93114 -12.60328 -12.58163 -12.48666 -12.25343 -12.03994 -12.00570 -11.93225 -11.82271 -11.71551 -11.24957 -11.20507 -10.90654 -9.89502 -9.80759 -9.63174 -8.42196 -6.60576 -1.06577 0.27764 0.47459 1.22791 1.35268 1.41316 1.52835 1.73509 1.99861 2.31738 2.73327 2.83843 2.87278 2.98086 3.21372 3.49599 3.58845 4.02361 4.08935 4.14875 4.15618 4.18920 4.32429 4.34841 4.43754 4.47839 4.52329 4.57761 4.59368 4.68061 4.70013 4.88400 4.97339 5.00669 5.03180 5.15470 5.19737 5.24281 5.43774 5.49309 5.50875 5.56312 5.62347 5.83888 6.04660 6.08355 6.43466 6.79087 7.06786 8.73946 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.005238 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.637575 B = 5344.321924 C = 6476.566282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.590 5.590 4 C 0.088 3.912 5 C -0.186 4.186 6 C 0.542 3.458 7 O -0.576 6.576 8 C -0.554 4.554 9 H 0.202 0.798 10 C -0.094 4.094 11 C -0.130 4.130 12 C -0.129 4.129 13 C -0.102 4.102 14 C -0.117 4.117 15 C -0.086 4.086 16 S 2.420 3.580 17 O -0.966 6.966 18 O -0.989 6.989 19 C -0.450 4.450 20 C -0.557 4.557 21 H 0.026 0.974 22 C 0.021 3.979 23 N -0.937 5.937 24 Si 0.953 3.047 25 H -0.249 1.249 26 H -0.279 1.279 27 H -0.218 1.218 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.026 0.974 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -12.640 -26.022 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.321 5.321 4 C -0.032 4.032 5 C -0.244 4.244 6 C 0.329 3.671 7 O -0.457 6.457 8 C -0.664 4.664 9 H 0.219 0.781 10 C -0.096 4.096 11 C -0.150 4.150 12 C -0.147 4.147 13 C -0.120 4.120 14 C -0.135 4.135 15 C -0.105 4.105 16 S 2.608 3.392 17 O -0.964 6.964 18 O -0.986 6.986 19 C -0.584 4.584 20 C -0.595 4.595 21 H 0.045 0.955 22 C -0.179 4.179 23 N -0.574 5.574 24 Si 0.771 3.229 25 H -0.173 1.173 26 H -0.204 1.204 27 H -0.140 1.140 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.045 0.955 31 H 0.136 0.864 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.151 0.849 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.184 0.816 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.815 -13.240 -24.662 28.589 hybrid contribution 0.056 0.572 0.476 0.746 sum 5.872 -12.668 -24.186 27.927 Atomic orbital electron populations 1.22134 0.95064 1.03431 1.01801 1.21686 0.95067 0.81021 1.03998 1.48013 1.63572 1.14807 1.05680 1.22097 0.98960 0.98524 0.83663 1.22550 0.95822 1.02650 1.03346 1.19363 0.76804 0.86201 0.84776 1.90826 1.54060 1.68129 1.32668 1.29536 1.04364 1.05733 1.26723 0.78061 1.18520 0.87731 1.03850 0.99453 1.21440 0.95579 0.99244 0.98688 1.21329 0.93806 1.00531 0.99031 1.21651 1.01693 0.95325 0.93304 1.21567 0.92304 0.98974 1.00635 1.21416 0.97251 0.96589 0.95196 1.08018 0.74818 0.78914 0.77479 1.93409 1.72735 1.74480 1.55733 1.93416 1.32059 1.87556 1.85562 1.27901 1.09800 1.15454 1.05264 1.20300 1.42889 0.99073 0.97254 0.95524 1.26154 0.94867 0.96540 1.00367 1.70042 1.46606 1.10889 1.29898 0.85638 0.79412 0.79389 0.78454 1.17269 1.20399 1.13982 0.90484 0.89470 0.95506 0.86432 0.92153 0.86978 0.89013 0.91677 0.92751 0.88598 0.87654 0.84920 0.82771 0.81593 0.81596 0.86302 0.86930 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.24 71.98 0.74 -2.33 16 2 C 0.10 2.03 6.13 86.38 0.53 2.55 16 3 N -0.59 -13.32 2.47 -821.82 -2.03 -15.35 16 4 C 0.09 1.12 5.84 86.38 0.50 1.63 16 5 C -0.19 -2.04 9.48 71.98 0.68 -1.36 16 6 C 0.54 18.12 6.49 87.66 0.57 18.69 16 7 O -0.58 -25.38 15.23 5.50 0.08 -25.30 16 8 C -0.55 -17.13 2.04 29.10 0.06 -17.07 16 9 H 0.20 4.06 6.04 -2.39 -0.01 4.05 16 10 C -0.09 -2.53 2.41 -19.87 -0.05 -2.58 16 11 C -0.13 -4.14 8.44 22.27 0.19 -3.95 16 12 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 13 C -0.10 -1.77 10.05 22.27 0.22 -1.55 16 14 C -0.12 -1.72 9.90 22.27 0.22 -1.50 16 15 C -0.09 -1.51 6.85 22.27 0.15 -1.36 16 16 S 2.42 112.82 3.56 -56.49 -0.20 112.61 16 17 O -0.97 -52.44 15.29 -122.75 -1.88 -54.32 16 18 O -0.99 -53.23 18.10 -127.37 -2.31 -55.53 16 19 C -0.45 -20.40 4.31 71.24 0.31 -20.09 16 20 C -0.56 -33.40 9.68 25.60 0.25 -33.15 16 21 H 0.03 1.85 7.96 -2.91 -0.02 1.82 16 22 C 0.02 1.24 5.47 84.65 0.46 1.71 16 23 N -0.94 -58.80 13.96 21.44 0.30 -58.50 16 24 Si 0.95 39.75 27.47 68.60 1.88 41.64 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 27 H -0.22 -7.58 6.54 99.48 0.65 -6.93 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.12 1.36 8.07 -2.38 -0.02 1.34 16 32 H 0.06 1.50 7.42 -2.38 -0.02 1.49 16 33 H 0.11 0.79 8.07 -2.39 -0.02 0.77 16 34 H 0.09 0.96 5.94 -2.39 -0.01 0.95 16 35 H 0.06 0.98 3.69 -2.38 -0.01 0.97 16 36 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 4.19 6.59 -2.91 -0.02 4.17 16 39 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.17 1.59 7.95 -2.91 -0.02 1.57 16 43 H 0.12 4.38 7.57 -2.39 -0.02 4.36 16 44 H 0.11 4.54 6.77 -2.39 -0.02 4.52 16 45 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -95.56 373.48 1.84 -93.72 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.93 Total: 24.34 kcal Atomic # 6 Polarization: -68.37 SS G_CDS: 5.06 Total: -63.31 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.73 Total: -73.84 kcal Atomic # 8 Polarization: -131.05 SS G_CDS: -4.10 Total: -135.15 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.88 Total: 41.64 kcal Atomic # 16 Polarization: 112.82 SS G_CDS: -0.20 Total: 112.61 kcal Total: -95.56 1.84 -93.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905264874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.998 kcal (2) G-P(sol) polarization free energy of solvation -95.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds