Wall clock time and date at job start Tue Mar 31 2020 22:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47290 * 2 1 4 4 C 1.46497 * 119.99687 * 95.92314 * 3 2 1 5 5 C 1.50696 * 109.47425 * 90.00232 * 4 3 2 6 6 C 1.38231 * 120.00429 * 89.99523 * 5 4 3 7 7 C 1.38235 * 120.00382 * 179.97438 * 6 5 4 8 8 C 1.38240 * 119.99838 * 0.09736 * 7 6 5 9 9 C 1.38229 * 119.99730 * 359.86319 * 8 7 6 10 10 C 1.38233 * 120.00470 * 0.08687 * 9 8 7 11 11 C 1.34779 * 120.00188 * 275.92272 * 3 2 1 12 12 O 1.21277 * 119.99735 * 185.08519 * 11 3 2 13 13 C 1.50699 * 119.99925 * 5.08314 * 11 3 2 14 14 H 1.09003 * 109.47196 * 344.19291 * 13 11 3 15 15 C 1.52999 * 109.47169 * 104.19647 * 13 11 3 16 16 S 1.81399 * 109.47185 * 224.19686 * 13 11 3 17 17 O 1.42104 * 108.57796 * 299.48839 * 16 13 11 18 18 O 1.42096 * 108.57770 * 70.51233 * 16 13 11 19 19 C 1.81403 * 101.92363 * 185.00010 * 16 13 11 20 20 C 1.50697 * 109.47106 * 180.02562 * 19 16 13 21 21 H 1.07994 * 119.99920 * 359.97438 * 20 19 16 22 22 C 1.37881 * 119.99512 * 180.02562 * 20 19 16 23 23 N 1.31514 * 120.00515 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99647 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.47129 * 59.99759 * 24 22 20 26 26 H 1.48501 * 109.47319 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47451 * 300.00126 * 24 22 20 28 28 H 1.09008 * 109.47189 * 65.81935 * 1 2 3 29 29 H 1.08995 * 109.47413 * 185.82240 * 1 2 3 30 30 H 1.09007 * 109.47168 * 305.82717 * 1 2 3 31 31 H 1.09004 * 109.46719 * 240.00531 * 2 1 3 32 32 H 1.09001 * 109.47487 * 120.00372 * 2 1 3 33 33 H 1.09000 * 109.47328 * 329.99872 * 4 3 2 34 34 H 1.09004 * 109.46671 * 210.00047 * 4 3 2 35 35 H 1.08003 * 119.99889 * 359.70613 * 6 5 4 36 36 H 1.07996 * 119.99924 * 179.97438 * 7 6 5 37 37 H 1.08002 * 119.99832 * 179.97438 * 8 7 6 38 38 H 1.07998 * 119.99810 * 180.02562 * 9 8 7 39 39 H 1.08005 * 120.00225 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.46632 * 306.70768 * 15 13 11 41 41 H 1.09002 * 109.47175 * 66.70641 * 15 13 11 42 42 H 1.09001 * 109.46967 * 186.70722 * 15 13 11 43 43 H 1.09005 * 109.46949 * 300.00195 * 19 16 13 44 44 H 1.09000 * 109.46916 * 59.99589 * 19 16 13 45 45 H 0.96994 * 120.00086 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3859 2.0281 1.2620 5 6 3.8443 1.7789 1.5481 6 6 4.8007 2.6626 1.0840 7 6 6.1384 2.4342 1.3469 8 6 6.5201 1.3211 2.0723 9 6 5.5637 0.4378 2.5371 10 6 4.2259 0.6667 2.2751 11 6 2.1294 2.0568 -1.1610 12 8 2.6197 3.1660 -1.1725 13 6 1.6446 1.4337 -2.4446 14 1 1.5030 0.3629 -2.2980 15 6 0.3155 2.0730 -2.8516 16 16 2.8725 1.7078 -3.7514 17 8 3.0335 3.1078 -3.9349 18 8 4.0143 0.9086 -3.4745 19 6 2.0297 1.0273 -5.2064 20 6 2.9190 1.1703 -6.4146 21 1 3.8934 1.6254 -6.3170 22 6 2.4879 0.7209 -7.6448 23 7 1.3010 0.1672 -7.7638 24 14 3.5898 0.8988 -9.1426 25 1 4.8578 0.1599 -8.9149 26 1 2.8999 0.3416 -10.3337 27 1 3.8883 2.3356 -9.3699 28 1 -0.3634 0.4210 -0.9376 29 1 -0.3634 -1.0223 0.1042 30 1 -0.3634 0.6016 0.8333 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7816 1.6170 2.0706 34 1 2.2089 3.1009 1.1853 35 1 4.5030 3.5291 0.5122 36 1 6.8855 3.1244 0.9839 37 1 7.5653 1.1424 2.2774 38 1 5.8618 -0.4316 3.1042 39 1 3.4787 -0.0236 2.6379 40 1 -0.3863 2.0130 -2.0197 41 1 0.4801 3.1182 -3.1135 42 1 -0.0943 1.5431 -3.7115 43 1 1.8110 -0.0274 -5.0394 44 1 1.0989 1.5693 -5.3736 45 1 0.9979 -0.1493 -8.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:14 Heat of formation + Delta-G solvation = -81.563731 kcal Electronic energy + Delta-G solvation = -28197.139753 eV Core-core repulsion = 24307.153218 eV Total energy + Delta-G solvation = -3889.986534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.39143 -38.95140 -36.26067 -35.96294 -35.01512 -33.73214 -33.31423 -31.97938 -30.94370 -30.18887 -29.05298 -26.75959 -24.33050 -23.75747 -23.46794 -22.53559 -21.55079 -19.35907 -17.90737 -17.62004 -17.19066 -16.85104 -16.39476 -15.76809 -15.47734 -15.26566 -15.06573 -14.85256 -14.64505 -14.21309 -14.14218 -13.86953 -13.46481 -13.23784 -12.95725 -12.77620 -12.64084 -12.57442 -12.39729 -12.27356 -12.01109 -11.92154 -11.62537 -11.40557 -11.39645 -11.19466 -11.08367 -11.03240 -11.02048 -10.86698 -10.61484 -10.11443 -9.89547 -9.79814 -9.09335 -8.96585 -8.93767 -8.75459 -8.70634 -6.34355 -4.43580 0.81687 1.20911 1.36742 2.57795 2.86137 3.25497 3.26951 3.32924 3.72197 3.80140 4.14367 4.26789 4.52122 4.62469 4.65278 4.73214 4.81405 4.93768 4.98651 4.99492 5.01786 5.12530 5.16107 5.20853 5.32432 5.38528 5.48415 5.53648 5.54909 5.60297 5.70056 5.79005 5.91284 5.93741 6.00753 6.18791 6.34057 6.37464 6.48238 6.54848 6.61270 6.66205 6.94855 7.16650 7.47199 7.73239 8.05297 8.57684 9.23427 10.77460 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.003444 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.500301 B = 8127.088244 C = 9019.431369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.156 3.844 5 C -0.111 4.111 6 C -0.093 4.093 7 C -0.121 4.121 8 C -0.117 4.117 9 C -0.127 4.127 10 C -0.108 4.108 11 C 0.544 3.456 12 O -0.513 6.513 13 C -0.632 4.632 14 H 0.145 0.855 15 C -0.129 4.129 16 S 2.404 3.596 17 O -0.927 6.927 18 O -0.952 6.952 19 C -0.399 4.399 20 C -0.530 4.530 21 H 0.071 0.929 22 C 0.077 3.923 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.268 1.268 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -2.190 20.499 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.034 3.966 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.139 4.139 8 C -0.135 4.135 9 C -0.145 4.145 10 C -0.127 4.127 11 C 0.331 3.669 12 O -0.388 6.388 13 C -0.736 4.736 14 H 0.163 0.837 15 C -0.187 4.187 16 S 2.585 3.415 17 O -0.924 6.924 18 O -0.949 6.949 19 C -0.534 4.534 20 C -0.569 4.569 21 H 0.090 0.910 22 C -0.129 4.129 23 N -0.518 5.518 24 Si 0.731 3.269 25 H -0.194 1.194 26 H -0.207 1.207 27 H -0.193 1.193 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.008 -1.270 20.560 20.624 hybrid contribution -0.338 -0.676 -0.674 1.013 sum -1.346 -1.946 19.885 20.026 Atomic orbital electron populations 1.22353 0.95430 1.02641 1.03263 1.21673 0.94715 0.82187 1.03727 1.47947 1.65360 1.14392 1.06010 1.20379 0.91137 0.99789 0.85307 1.20221 0.96023 0.95910 0.99082 1.21321 0.92761 0.99605 0.97472 1.21231 0.96207 0.97902 0.98595 1.21183 0.99417 0.94808 0.98077 1.21085 0.93101 0.99504 1.00794 1.20994 0.96175 0.96686 0.98813 1.19484 0.78043 0.85366 0.84040 1.90810 1.43079 1.19058 1.85835 1.30915 1.18614 1.10105 1.13968 0.83704 1.21565 0.91770 1.02305 1.03039 1.09088 0.77361 0.76687 0.78387 1.93499 1.84608 1.30227 1.84112 1.93477 1.45231 1.71530 1.84705 1.27551 1.08528 1.07558 1.09747 1.20316 1.01995 1.43344 0.91246 0.91050 1.24906 0.95343 0.93693 0.98979 1.69926 1.18096 1.38248 1.25514 0.86418 0.80519 0.79320 0.80672 1.19390 1.20694 1.19321 0.91387 0.91179 0.92175 0.89939 0.89810 0.89510 0.88850 0.85104 0.85914 0.86177 0.86181 0.86340 0.91045 0.89925 0.89174 0.89701 0.89199 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 10.05 37.15 0.37 -1.04 16 2 C 0.10 0.97 5.74 -4.04 -0.02 0.94 16 3 N -0.60 -7.76 2.47 -175.06 -0.43 -8.19 16 4 C 0.16 1.74 5.47 -5.20 -0.03 1.72 16 5 C -0.11 -1.38 5.46 -104.63 -0.57 -1.95 16 6 C -0.09 -1.31 9.57 -39.58 -0.38 -1.69 16 7 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 8 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 9 C -0.13 -1.32 10.05 -39.59 -0.40 -1.71 16 10 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 11 C 0.54 9.16 6.50 -10.98 -0.07 9.09 16 12 O -0.51 -10.33 14.75 -6.48 -0.10 -10.43 16 13 C -0.63 -10.27 2.30 -27.88 -0.06 -10.34 16 14 H 0.15 1.88 5.37 -51.92 -0.28 1.60 16 15 C -0.13 -1.81 8.33 37.16 0.31 -1.50 16 16 S 2.40 53.33 4.04 -107.50 -0.43 52.89 16 17 O -0.93 -23.50 17.11 -63.49 -1.09 -24.59 16 18 O -0.95 -23.60 18.10 -57.83 -1.05 -24.65 16 19 C -0.40 -9.42 4.97 36.00 0.18 -9.24 16 20 C -0.53 -14.71 9.13 -34.44 -0.31 -15.03 16 21 H 0.07 1.99 7.71 -52.49 -0.40 1.59 16 22 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 23 N -0.88 -24.36 13.29 55.43 0.74 -23.62 16 24 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.07 0.60 5.44 -51.92 -0.28 0.31 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.85 6.29 -51.93 -0.33 0.52 16 32 H 0.08 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.09 0.68 8.02 -51.93 -0.42 0.27 16 34 H 0.09 1.12 7.44 -51.93 -0.39 0.73 16 35 H 0.13 2.00 7.37 -52.48 -0.39 1.61 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 40 H 0.07 0.80 6.62 -51.93 -0.34 0.46 16 41 H 0.08 1.26 8.01 -51.93 -0.42 0.85 16 42 H 0.09 1.16 6.80 -51.93 -0.35 0.80 16 43 H 0.08 1.91 8.14 -51.92 -0.42 1.49 16 44 H 0.09 2.03 6.94 -51.92 -0.36 1.66 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -36.39 382.44 -10.35 -46.74 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.47 Total: 3.99 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: -2.26 Total: -33.89 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.30 Total: -31.81 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -2.23 Total: -59.66 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 53.33 SS G_CDS: -0.43 Total: 52.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.39 -10.35 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.828 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds