Wall clock time and date at job start Tue Mar 31 2020 22:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47290 * 2 1 4 4 C 1.46497 * 119.99687 * 95.92314 * 3 2 1 5 5 C 1.50696 * 109.47425 * 90.00232 * 4 3 2 6 6 C 1.38231 * 120.00429 * 89.99523 * 5 4 3 7 7 C 1.38235 * 120.00382 * 179.97438 * 6 5 4 8 8 C 1.38240 * 119.99838 * 0.09736 * 7 6 5 9 9 C 1.38229 * 119.99730 * 359.86319 * 8 7 6 10 10 C 1.38233 * 120.00470 * 0.08687 * 9 8 7 11 11 C 1.34779 * 120.00188 * 275.92272 * 3 2 1 12 12 O 1.21277 * 119.99735 * 185.08519 * 11 3 2 13 13 C 1.50699 * 119.99925 * 5.08314 * 11 3 2 14 14 H 1.09003 * 109.47196 * 344.19291 * 13 11 3 15 15 C 1.52999 * 109.47169 * 104.19647 * 13 11 3 16 16 S 1.81399 * 109.47185 * 224.19686 * 13 11 3 17 17 O 1.42104 * 108.57796 * 299.48839 * 16 13 11 18 18 O 1.42096 * 108.57770 * 70.51233 * 16 13 11 19 19 C 1.81403 * 101.92363 * 185.00010 * 16 13 11 20 20 C 1.50697 * 109.47106 * 180.02562 * 19 16 13 21 21 H 1.07994 * 119.99920 * 359.97438 * 20 19 16 22 22 C 1.37881 * 119.99512 * 180.02562 * 20 19 16 23 23 N 1.31514 * 120.00515 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99647 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.47129 * 59.99759 * 24 22 20 26 26 H 1.48501 * 109.47319 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47451 * 300.00126 * 24 22 20 28 28 H 1.09008 * 109.47189 * 65.81935 * 1 2 3 29 29 H 1.08995 * 109.47413 * 185.82240 * 1 2 3 30 30 H 1.09007 * 109.47168 * 305.82717 * 1 2 3 31 31 H 1.09004 * 109.46719 * 240.00531 * 2 1 3 32 32 H 1.09001 * 109.47487 * 120.00372 * 2 1 3 33 33 H 1.09000 * 109.47328 * 329.99872 * 4 3 2 34 34 H 1.09004 * 109.46671 * 210.00047 * 4 3 2 35 35 H 1.08003 * 119.99889 * 359.70613 * 6 5 4 36 36 H 1.07996 * 119.99924 * 179.97438 * 7 6 5 37 37 H 1.08002 * 119.99832 * 179.97438 * 8 7 6 38 38 H 1.07998 * 119.99810 * 180.02562 * 9 8 7 39 39 H 1.08005 * 120.00225 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.46632 * 306.70768 * 15 13 11 41 41 H 1.09002 * 109.47175 * 66.70641 * 15 13 11 42 42 H 1.09001 * 109.46967 * 186.70722 * 15 13 11 43 43 H 1.09005 * 109.46949 * 300.00195 * 19 16 13 44 44 H 1.09000 * 109.46916 * 59.99589 * 19 16 13 45 45 H 0.96994 * 120.00086 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3859 2.0281 1.2620 5 6 3.8443 1.7789 1.5481 6 6 4.8007 2.6626 1.0840 7 6 6.1384 2.4342 1.3469 8 6 6.5201 1.3211 2.0723 9 6 5.5637 0.4378 2.5371 10 6 4.2259 0.6667 2.2751 11 6 2.1294 2.0568 -1.1610 12 8 2.6197 3.1660 -1.1725 13 6 1.6446 1.4337 -2.4446 14 1 1.5030 0.3629 -2.2980 15 6 0.3155 2.0730 -2.8516 16 16 2.8725 1.7078 -3.7514 17 8 3.0335 3.1078 -3.9349 18 8 4.0143 0.9086 -3.4745 19 6 2.0297 1.0273 -5.2064 20 6 2.9190 1.1703 -6.4146 21 1 3.8934 1.6254 -6.3170 22 6 2.4879 0.7209 -7.6448 23 7 1.3010 0.1672 -7.7638 24 14 3.5898 0.8988 -9.1426 25 1 4.8578 0.1599 -8.9149 26 1 2.8999 0.3416 -10.3337 27 1 3.8883 2.3356 -9.3699 28 1 -0.3634 0.4210 -0.9376 29 1 -0.3634 -1.0223 0.1042 30 1 -0.3634 0.6016 0.8333 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7816 1.6170 2.0706 34 1 2.2089 3.1009 1.1853 35 1 4.5030 3.5291 0.5122 36 1 6.8855 3.1244 0.9839 37 1 7.5653 1.1424 2.2774 38 1 5.8618 -0.4316 3.1042 39 1 3.4787 -0.0236 2.6379 40 1 -0.3863 2.0130 -2.0197 41 1 0.4801 3.1182 -3.1135 42 1 -0.0943 1.5431 -3.7115 43 1 1.8110 -0.0274 -5.0394 44 1 1.0989 1.5693 -5.3736 45 1 0.9979 -0.1493 -8.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:14 Heat of formation + Delta-G solvation = -105.879469 kcal Electronic energy + Delta-G solvation = -28198.194162 eV Core-core repulsion = 24307.153218 eV Total energy + Delta-G solvation = -3891.040944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52387 -39.90857 -37.93025 -37.27651 -36.88537 -35.46072 -34.80164 -32.94342 -31.81727 -31.06209 -30.98362 -27.75902 -25.59462 -25.47916 -24.49037 -23.41183 -22.50408 -20.60559 -19.54536 -19.00928 -18.78304 -17.91341 -17.78670 -17.32093 -16.88216 -16.61944 -16.45317 -16.08481 -15.94424 -15.67715 -15.26559 -14.80486 -14.47562 -14.32915 -14.27678 -14.10095 -13.99292 -13.68713 -13.48532 -13.42625 -13.39538 -13.10586 -13.06106 -13.00067 -12.92219 -12.72633 -12.52927 -12.45916 -12.21307 -12.03497 -11.89576 -11.80344 -11.58637 -11.21780 -10.85685 -10.76152 -9.94040 -9.85151 -9.70443 -8.41519 -6.57490 -0.92901 0.31074 0.46902 1.29984 1.38100 1.40630 1.48935 1.77571 2.04601 2.31389 2.77882 2.91074 2.93125 3.10924 3.22468 3.67662 3.76111 3.82071 3.90335 4.05952 4.12698 4.23598 4.27009 4.34440 4.48995 4.54539 4.58007 4.63208 4.67634 4.72331 4.73441 4.74168 4.88002 4.98534 5.06348 5.07062 5.12661 5.35344 5.39490 5.47240 5.51946 5.58867 5.63375 5.73017 6.08828 6.09335 6.49015 6.83982 7.12501 8.70474 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.003444 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.500301 B = 8127.088244 C = 9019.431369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.085 3.915 3 N -0.590 5.590 4 C 0.153 3.847 5 C -0.123 4.123 6 C -0.127 4.127 7 C -0.144 4.144 8 C -0.123 4.123 9 C -0.127 4.127 10 C -0.104 4.104 11 C 0.532 3.468 12 O -0.558 6.558 13 C -0.602 4.602 14 H 0.185 0.815 15 C -0.133 4.133 16 S 2.404 3.596 17 O -0.973 6.973 18 O -0.990 6.990 19 C -0.405 4.405 20 C -0.569 4.569 21 H 0.053 0.947 22 C 0.034 3.966 23 N -0.901 5.901 24 Si 0.956 3.044 25 H -0.266 1.266 26 H -0.263 1.263 27 H -0.268 1.268 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -4.947 22.628 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.036 4.036 3 N -0.322 5.322 4 C 0.032 3.968 5 C -0.124 4.124 6 C -0.146 4.146 7 C -0.162 4.162 8 C -0.141 4.141 9 C -0.145 4.145 10 C -0.122 4.122 11 C 0.318 3.682 12 O -0.437 6.437 13 C -0.713 4.713 14 H 0.202 0.798 15 C -0.191 4.191 16 S 2.592 3.408 17 O -0.971 6.971 18 O -0.987 6.987 19 C -0.539 4.539 20 C -0.608 4.608 21 H 0.072 0.928 22 C -0.170 4.170 23 N -0.537 5.537 24 Si 0.779 3.221 25 H -0.190 1.190 26 H -0.187 1.187 27 H -0.192 1.192 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.134 0.866 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.545 -4.056 22.651 23.152 hybrid contribution 0.105 0.132 -1.165 1.177 sum -2.440 -3.924 21.487 21.978 Atomic orbital electron populations 1.22344 0.93550 1.04261 1.03226 1.22093 0.96310 0.80134 1.05101 1.48060 1.63600 1.15343 1.05167 1.20595 0.91353 0.99324 0.85536 1.20390 0.96095 0.96364 0.99566 1.21329 0.94229 1.00000 0.99017 1.21409 0.95867 0.99187 0.99714 1.21515 1.01076 0.94154 0.97372 1.21550 0.92930 0.99948 1.00050 1.21395 0.97256 0.96100 0.97462 1.19606 0.78214 0.85188 0.85227 1.90809 1.45215 1.21155 1.86509 1.30503 1.16802 1.12977 1.10973 0.79822 1.21729 0.91078 1.01155 1.05164 1.08463 0.77930 0.75244 0.79175 1.93440 1.85904 1.32241 1.85474 1.93418 1.48120 1.71771 1.85418 1.27513 1.08243 1.08343 1.09825 1.20662 1.02308 1.44186 0.93596 0.92840 1.25670 0.96735 0.93205 1.01415 1.69960 1.18913 1.38307 1.26534 0.85631 0.79137 0.79374 0.78000 1.19036 1.18684 1.19232 0.92283 0.88929 0.91223 0.90533 0.86617 0.84981 0.90577 0.88085 0.85887 0.83991 0.82954 0.82624 0.87221 0.91760 0.87765 0.88627 0.88410 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 10.05 71.98 0.72 -1.22 16 2 C 0.08 1.29 5.74 86.38 0.50 1.79 16 3 N -0.59 -13.87 2.47 -826.16 -2.04 -15.91 16 4 C 0.15 3.14 5.47 85.63 0.47 3.61 16 5 C -0.12 -2.91 5.46 -19.87 -0.11 -3.02 16 6 C -0.13 -3.78 9.57 22.27 0.21 -3.57 16 7 C -0.14 -3.81 10.05 22.27 0.22 -3.58 16 8 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 9 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 10 C -0.10 -1.84 9.70 22.27 0.22 -1.62 16 11 C 0.53 17.75 6.50 87.66 0.57 18.32 16 12 O -0.56 -23.57 14.75 8.49 0.13 -23.44 16 13 C -0.60 -19.06 2.30 29.85 0.07 -19.00 16 14 H 0.18 4.32 5.37 -2.39 -0.01 4.31 16 15 C -0.13 -3.54 8.33 71.98 0.60 -2.94 16 16 S 2.40 110.67 4.04 -56.49 -0.23 110.44 16 17 O -0.97 -52.42 17.11 -121.96 -2.09 -54.51 16 18 O -0.99 -51.11 18.10 -127.37 -2.30 -53.42 16 19 C -0.40 -19.55 4.97 71.24 0.35 -19.20 16 20 C -0.57 -32.57 9.13 25.60 0.23 -32.33 16 21 H 0.05 3.15 7.71 -2.91 -0.02 3.13 16 22 C 0.03 1.86 5.46 84.66 0.46 2.32 16 23 N -0.90 -49.60 13.29 21.45 0.28 -49.32 16 24 Si 0.96 43.12 29.54 68.60 2.03 45.14 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 28 H 0.06 0.77 5.44 -2.38 -0.01 0.76 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.08 1.28 6.29 -2.38 -0.01 1.27 16 32 H 0.12 1.08 8.03 -2.39 -0.02 1.06 16 33 H 0.13 1.49 8.02 -2.39 -0.02 1.47 16 34 H 0.08 1.84 7.44 -2.38 -0.02 1.82 16 35 H 0.10 3.50 7.37 -2.91 -0.02 3.48 16 36 H 0.12 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.11 2.12 6.62 -2.39 -0.02 2.11 16 41 H 0.06 1.98 8.01 -2.39 -0.02 1.96 16 42 H 0.10 2.48 6.80 -2.39 -0.02 2.47 16 43 H 0.10 4.32 8.14 -2.39 -0.02 4.30 16 44 H 0.10 4.48 6.94 -2.39 -0.02 4.47 16 45 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -84.50 382.44 1.73 -82.76 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.99 Total: 23.08 kcal Atomic # 6 Polarization: -69.79 SS G_CDS: 4.97 Total: -64.82 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -1.76 Total: -65.23 kcal Atomic # 8 Polarization: -127.11 SS G_CDS: -4.27 Total: -131.37 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 110.67 SS G_CDS: -0.23 Total: 110.44 kcal Total: -84.50 1.73 -82.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.117 kcal (2) G-P(sol) polarization free energy of solvation -84.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds