Wall clock time and date at job start Tue Mar 31 2020 22:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46973 * 2 1 4 4 C 1.46505 * 119.99777 * 89.99976 * 3 2 1 5 5 C 1.50706 * 109.47014 * 89.99749 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72616 * 5 4 3 7 7 C 1.38238 * 119.99754 * 179.76611 * 6 5 4 8 8 C 1.38234 * 120.00038 * 0.48818 * 7 6 5 9 9 C 1.38238 * 120.00047 * 359.78460 * 8 7 6 10 10 C 1.38235 * 120.00108 * 359.96171 * 9 8 7 11 11 C 1.34771 * 120.00232 * 269.99923 * 3 2 1 12 12 O 1.21287 * 119.99719 * 179.97438 * 11 3 2 13 13 C 1.50693 * 120.00119 * 0.02562 * 11 3 2 14 14 H 1.09003 * 109.47430 * 39.99630 * 13 11 3 15 15 C 1.53001 * 109.46986 * 279.99885 * 13 11 3 16 16 S 1.81403 * 109.47458 * 159.99976 * 13 11 3 17 17 O 1.42104 * 108.57522 * 294.48927 * 16 13 11 18 18 O 1.42099 * 108.58051 * 65.50905 * 16 13 11 19 19 C 1.81395 * 101.92362 * 179.97438 * 16 13 11 20 20 C 1.50696 * 109.47035 * 179.97438 * 19 16 13 21 21 H 1.08004 * 120.00316 * 359.97438 * 20 19 16 22 22 C 1.37887 * 120.00043 * 180.02562 * 20 19 16 23 23 N 1.31513 * 120.00016 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99865 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47043 * 90.00263 * 24 22 20 26 26 H 1.48494 * 109.47230 * 210.00347 * 24 22 20 27 27 H 1.48502 * 109.46937 * 330.00161 * 24 22 20 28 28 H 1.09003 * 109.46679 * 59.99890 * 1 2 3 29 29 H 1.08996 * 109.46616 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46748 * 299.99885 * 1 2 3 31 31 H 1.08997 * 109.47379 * 240.00502 * 2 1 3 32 32 H 1.08998 * 109.47531 * 120.00347 * 2 1 3 33 33 H 1.09000 * 109.46864 * 330.00556 * 4 3 2 34 34 H 1.09000 * 109.47078 * 209.99809 * 4 3 2 35 35 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 36 36 H 1.07999 * 119.99931 * 180.25459 * 7 6 5 37 37 H 1.08001 * 120.00294 * 179.76932 * 8 7 6 38 38 H 1.08000 * 120.00559 * 179.97438 * 9 8 7 39 39 H 1.07999 * 120.00165 * 179.97438 * 10 9 8 40 40 H 1.08999 * 109.47053 * 180.02562 * 15 13 11 41 41 H 1.09002 * 109.47201 * 299.99725 * 15 13 11 42 42 H 1.08995 * 109.47324 * 60.00022 * 15 13 11 43 43 H 1.09000 * 109.46850 * 299.99922 * 19 16 13 44 44 H 1.08997 * 109.46980 * 60.00013 * 19 16 13 45 45 H 0.97001 * 119.99643 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7039 6 6 3.9921 0.7521 2.5066 7 6 5.2984 0.5322 2.9017 8 6 6.2968 1.4008 2.5023 9 6 5.9896 2.4869 1.7042 10 6 4.6842 2.7039 1.3048 11 6 2.2430 2.0166 -1.1671 12 8 2.6468 3.1603 -1.1670 13 6 1.9913 1.3065 -2.4722 14 1 1.0805 0.7129 -2.3932 15 6 3.1730 0.3877 -2.7890 16 16 1.8032 2.5288 -3.7993 17 8 0.6276 3.2880 -3.5522 18 8 3.0415 3.2040 -3.9719 19 6 1.5158 1.4713 -5.2449 20 6 1.3325 2.3319 -6.4683 21 1 1.3834 3.4075 -6.3846 22 6 1.0989 1.7461 -7.6945 23 7 0.9394 2.4971 -8.7623 24 14 1.0102 -0.1141 -7.8392 25 1 -0.3918 -0.5601 -7.6374 26 1 1.4720 -0.5282 -9.1884 27 1 1.8800 -0.7329 -6.8068 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6876 2.0284 34 1 2.0955 3.1411 1.1385 35 1 3.2114 0.0755 2.8216 36 1 5.5384 -0.3162 3.5254 37 1 7.3169 1.2311 2.8140 38 1 6.7696 3.1659 1.3925 39 1 4.4441 3.5527 0.6816 40 1 2.9912 -0.1256 -3.7332 41 1 4.0838 0.9812 -2.8681 42 1 3.2861 -0.3468 -1.9916 43 1 2.3719 0.8122 -5.3887 44 1 0.6192 0.8727 -5.0846 45 1 0.7754 2.0850 -9.6249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:18 Heat of formation + Delta-G solvation = -78.623869 kcal Electronic energy + Delta-G solvation = -28127.708023 eV Core-core repulsion = 24237.848970 eV Total energy + Delta-G solvation = -3889.859053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.51480 -39.09080 -36.33546 -36.10720 -35.07610 -33.85260 -33.22645 -32.14398 -31.08452 -30.28713 -29.78576 -26.71686 -24.85778 -23.44100 -23.11778 -22.62844 -21.74335 -19.60167 -17.99610 -17.57163 -17.43046 -16.99881 -16.54941 -15.86439 -15.49185 -15.39933 -15.28972 -15.05982 -14.68272 -14.27366 -14.14408 -13.88781 -13.66681 -13.49282 -13.16408 -12.92055 -12.80036 -12.66909 -12.56624 -12.38784 -12.20082 -12.12734 -11.74678 -11.59567 -11.50058 -11.30269 -11.16446 -11.14730 -11.10589 -10.87618 -10.39283 -10.23343 -10.03734 -9.82451 -9.32600 -9.10803 -9.05956 -8.89718 -8.83427 -6.30314 -4.38818 0.69014 1.06659 1.22009 2.44140 2.76550 3.12388 3.17195 3.21571 3.60485 3.67019 4.07633 4.20395 4.41580 4.52810 4.55473 4.62628 4.72535 4.80199 4.88142 4.88854 4.91679 4.97186 5.03578 5.08069 5.25552 5.27706 5.41085 5.43193 5.44925 5.46044 5.54121 5.57640 5.78098 5.87018 5.89709 5.97698 6.13671 6.23436 6.23726 6.28726 6.34322 6.42336 6.80607 7.05978 7.18573 7.92655 8.03729 8.64512 9.23295 10.80958 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003202 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.503932 B = 8742.193005 C = 9021.803925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 N -0.601 5.601 4 C 0.152 3.848 5 C -0.108 4.108 6 C -0.108 4.108 7 C -0.127 4.127 8 C -0.118 4.118 9 C -0.122 4.122 10 C -0.094 4.094 11 C 0.551 3.449 12 O -0.519 6.519 13 C -0.638 4.638 14 H 0.149 0.851 15 C -0.135 4.135 16 S 2.441 3.559 17 O -0.940 6.940 18 O -0.923 6.923 19 C -0.458 4.458 20 C -0.529 4.529 21 H 0.089 0.911 22 C 0.088 3.912 23 N -0.879 5.879 24 Si 0.881 3.119 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -11.035 23.717 26.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.027 4.027 3 N -0.334 5.334 4 C 0.030 3.970 5 C -0.109 4.109 6 C -0.127 4.127 7 C -0.145 4.145 8 C -0.136 4.136 9 C -0.140 4.140 10 C -0.112 4.112 11 C 0.338 3.662 12 O -0.394 6.394 13 C -0.742 4.742 14 H 0.167 0.833 15 C -0.193 4.193 16 S 2.619 3.381 17 O -0.937 6.937 18 O -0.920 6.920 19 C -0.592 4.592 20 C -0.567 4.567 21 H 0.107 0.893 22 C -0.119 4.119 23 N -0.515 5.515 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.187 1.187 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.740 -9.513 23.667 25.944 hybrid contribution -0.212 -2.077 -0.104 2.090 sum 4.529 -11.590 23.563 26.646 Atomic orbital electron populations 1.22287 0.95444 1.02698 1.03193 1.21773 0.94757 0.82211 1.03921 1.47853 1.65943 1.14558 1.05041 1.20409 0.92169 0.99587 0.84799 1.20233 0.96169 0.96049 0.98466 1.21012 0.96606 0.96966 0.98099 1.21096 0.93066 0.99617 1.00726 1.21187 0.99225 0.95064 0.98134 1.21233 0.96671 0.97955 0.98107 1.21340 0.92534 0.99403 0.97944 1.19381 0.76815 0.85859 0.84149 1.90828 1.44694 1.17051 1.86834 1.31045 1.08987 1.19856 1.14265 0.83322 1.21620 0.95365 0.98648 1.03652 1.08041 0.75542 0.77579 0.76958 1.93485 1.49448 1.66131 1.84637 1.93487 1.44804 1.69491 1.84238 1.28106 1.05942 1.10873 1.14272 1.20096 1.53348 0.94080 0.89214 0.89334 1.24889 0.93261 0.98695 0.95006 1.69865 1.46199 1.35931 0.99519 0.86754 0.79156 0.85165 0.78230 1.19575 1.20553 1.18702 0.91778 0.91067 0.91989 0.89362 0.90086 0.89419 0.88540 0.86335 0.86219 0.86216 0.85918 0.85050 0.89472 0.89816 0.90701 0.89483 0.90201 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 10.10 37.16 0.38 -0.97 16 2 C 0.10 0.79 5.72 -4.04 -0.02 0.76 16 3 N -0.60 -7.03 2.46 -175.05 -0.43 -7.46 16 4 C 0.15 1.59 5.53 -5.19 -0.03 1.56 16 5 C -0.11 -1.15 5.46 -104.62 -0.57 -1.72 16 6 C -0.11 -0.95 9.70 -39.58 -0.38 -1.33 16 7 C -0.13 -1.08 10.05 -39.58 -0.40 -1.47 16 8 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 9 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 10 C -0.09 -1.13 9.70 -39.58 -0.38 -1.52 16 11 C 0.55 8.81 6.85 -10.99 -0.08 8.73 16 12 O -0.52 -10.27 14.76 -3.34 -0.05 -10.32 16 13 C -0.64 -9.63 2.26 -27.89 -0.06 -9.69 16 14 H 0.15 1.70 6.12 -51.92 -0.32 1.39 16 15 C -0.14 -1.69 8.66 37.16 0.32 -1.37 16 16 S 2.44 52.64 3.59 -107.50 -0.39 52.25 16 17 O -0.94 -23.15 18.10 -57.83 -1.05 -24.20 16 18 O -0.92 -22.91 17.40 -62.65 -1.09 -24.00 16 19 C -0.46 -10.09 4.18 36.00 0.15 -9.94 16 20 C -0.53 -14.90 9.68 -34.44 -0.33 -15.24 16 21 H 0.09 2.75 7.96 -52.48 -0.42 2.33 16 22 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 23 N -0.88 -26.18 13.96 55.43 0.77 -25.41 16 24 Si 0.88 19.87 27.47 -169.99 -4.67 15.20 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 28 H 0.06 0.59 7.15 -51.93 -0.37 0.22 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.68 4.76 -51.93 -0.25 0.43 16 32 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.09 0.65 8.01 -51.93 -0.42 0.24 16 34 H 0.10 1.15 7.36 -51.93 -0.38 0.77 16 35 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.79 7.58 -52.49 -0.40 1.39 16 40 H 0.09 0.97 6.55 -51.93 -0.34 0.63 16 41 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 42 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 43 H 0.09 1.70 5.93 -51.92 -0.31 1.39 16 44 H 0.08 1.53 7.57 -51.93 -0.39 1.14 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -37.63 380.23 -9.94 -47.57 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.46 Total: 3.63 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: -2.31 Total: -32.98 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.34 Total: -32.87 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -2.19 Total: -58.52 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Atomic # 16 Polarization: 52.64 SS G_CDS: -0.39 Total: 52.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.63 -9.94 -47.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.057 kcal (2) G-P(sol) polarization free energy of solvation -37.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds