Wall clock time and date at job start Tue Mar 31 2020 22:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46973 * 2 1 4 4 C 1.46505 * 119.99777 * 89.99976 * 3 2 1 5 5 C 1.50706 * 109.47014 * 89.99749 * 4 3 2 6 6 C 1.38233 * 120.00109 * 269.72616 * 5 4 3 7 7 C 1.38238 * 119.99754 * 179.76611 * 6 5 4 8 8 C 1.38234 * 120.00038 * 0.48818 * 7 6 5 9 9 C 1.38238 * 120.00047 * 359.78460 * 8 7 6 10 10 C 1.38235 * 120.00108 * 359.96171 * 9 8 7 11 11 C 1.34771 * 120.00232 * 269.99923 * 3 2 1 12 12 O 1.21287 * 119.99719 * 179.97438 * 11 3 2 13 13 C 1.50693 * 120.00119 * 0.02562 * 11 3 2 14 14 H 1.09003 * 109.47430 * 39.99630 * 13 11 3 15 15 C 1.53001 * 109.46986 * 279.99885 * 13 11 3 16 16 S 1.81403 * 109.47458 * 159.99976 * 13 11 3 17 17 O 1.42104 * 108.57522 * 294.48927 * 16 13 11 18 18 O 1.42099 * 108.58051 * 65.50905 * 16 13 11 19 19 C 1.81395 * 101.92362 * 179.97438 * 16 13 11 20 20 C 1.50696 * 109.47035 * 179.97438 * 19 16 13 21 21 H 1.08004 * 120.00316 * 359.97438 * 20 19 16 22 22 C 1.37887 * 120.00043 * 180.02562 * 20 19 16 23 23 N 1.31513 * 120.00016 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99865 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47043 * 90.00263 * 24 22 20 26 26 H 1.48494 * 109.47230 * 210.00347 * 24 22 20 27 27 H 1.48502 * 109.46937 * 330.00161 * 24 22 20 28 28 H 1.09003 * 109.46679 * 59.99890 * 1 2 3 29 29 H 1.08996 * 109.46616 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46748 * 299.99885 * 1 2 3 31 31 H 1.08997 * 109.47379 * 240.00502 * 2 1 3 32 32 H 1.08998 * 109.47531 * 120.00347 * 2 1 3 33 33 H 1.09000 * 109.46864 * 330.00556 * 4 3 2 34 34 H 1.09000 * 109.47078 * 209.99809 * 4 3 2 35 35 H 1.08004 * 119.99934 * 0.02562 * 6 5 4 36 36 H 1.07999 * 119.99931 * 180.25459 * 7 6 5 37 37 H 1.08001 * 120.00294 * 179.76932 * 8 7 6 38 38 H 1.08000 * 120.00559 * 179.97438 * 9 8 7 39 39 H 1.07999 * 120.00165 * 179.97438 * 10 9 8 40 40 H 1.08999 * 109.47053 * 180.02562 * 15 13 11 41 41 H 1.09002 * 109.47201 * 299.99725 * 15 13 11 42 42 H 1.08995 * 109.47324 * 60.00022 * 15 13 11 43 43 H 1.09000 * 109.46850 * 299.99922 * 19 16 13 44 44 H 1.08997 * 109.46980 * 60.00013 * 19 16 13 45 45 H 0.97001 * 119.99643 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7039 6 6 3.9921 0.7521 2.5066 7 6 5.2984 0.5322 2.9017 8 6 6.2968 1.4008 2.5023 9 6 5.9896 2.4869 1.7042 10 6 4.6842 2.7039 1.3048 11 6 2.2430 2.0166 -1.1671 12 8 2.6468 3.1603 -1.1670 13 6 1.9913 1.3065 -2.4722 14 1 1.0805 0.7129 -2.3932 15 6 3.1730 0.3877 -2.7890 16 16 1.8032 2.5288 -3.7993 17 8 0.6276 3.2880 -3.5522 18 8 3.0415 3.2040 -3.9719 19 6 1.5158 1.4713 -5.2449 20 6 1.3325 2.3319 -6.4683 21 1 1.3834 3.4075 -6.3846 22 6 1.0989 1.7461 -7.6945 23 7 0.9394 2.4971 -8.7623 24 14 1.0102 -0.1141 -7.8392 25 1 -0.3918 -0.5601 -7.6374 26 1 1.4720 -0.5282 -9.1884 27 1 1.8800 -0.7329 -6.8068 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6876 2.0284 34 1 2.0955 3.1411 1.1385 35 1 3.2114 0.0755 2.8216 36 1 5.5384 -0.3162 3.5254 37 1 7.3169 1.2311 2.8140 38 1 6.7696 3.1659 1.3925 39 1 4.4441 3.5527 0.6816 40 1 2.9912 -0.1256 -3.7332 41 1 4.0838 0.9812 -2.8681 42 1 3.2861 -0.3468 -1.9916 43 1 2.3719 0.8122 -5.3887 44 1 0.6192 0.8727 -5.0846 45 1 0.7754 2.0850 -9.6249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:17 Heat of formation + Delta-G solvation = -106.385266 kcal Electronic energy + Delta-G solvation = -28128.911847 eV Core-core repulsion = 24237.848970 eV Total energy + Delta-G solvation = -3891.062877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55295 -39.90844 -37.93086 -37.34784 -36.86329 -35.36227 -34.83767 -32.96541 -31.79900 -31.73282 -31.02053 -27.60261 -25.84917 -25.14625 -24.19759 -23.34330 -22.58381 -20.69301 -19.64620 -19.29131 -18.71100 -17.88645 -17.71136 -17.21371 -16.90037 -16.83114 -16.39639 -15.99720 -15.92243 -15.83994 -15.06824 -14.92903 -14.68125 -14.48781 -14.30784 -14.19634 -13.97457 -13.66186 -13.55486 -13.38301 -13.37510 -13.15035 -13.06660 -13.02012 -12.94002 -12.58329 -12.51940 -12.23032 -12.18666 -11.95785 -11.85234 -11.80168 -11.65582 -11.29167 -10.99796 -10.89467 -9.93667 -9.83310 -9.70481 -8.40968 -6.59463 -0.97441 0.32450 0.48813 1.26678 1.37450 1.43568 1.54417 1.77144 2.06277 2.32998 2.79562 2.88297 2.94896 3.11947 3.24343 3.67353 3.78659 3.81446 3.90014 4.05401 4.14752 4.24597 4.28201 4.34721 4.35026 4.45495 4.52007 4.55747 4.60480 4.65622 4.69707 4.75050 4.86005 4.93904 5.08067 5.09064 5.15091 5.25507 5.39213 5.43468 5.54590 5.61564 5.66440 5.85245 6.09297 6.10335 6.45703 6.81632 7.07703 8.75387 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003202 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.503932 B = 8742.193005 C = 9021.803925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 N -0.586 5.586 4 C 0.149 3.851 5 C -0.116 4.116 6 C -0.101 4.101 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.139 4.139 10 C -0.125 4.125 11 C 0.536 3.464 12 O -0.574 6.574 13 C -0.600 4.600 14 H 0.196 0.804 15 C -0.143 4.143 16 S 2.422 3.578 17 O -0.992 6.992 18 O -0.978 6.978 19 C -0.460 4.460 20 C -0.559 4.559 21 H 0.025 0.975 22 C 0.017 3.983 23 N -0.940 5.940 24 Si 0.957 3.043 25 H -0.252 1.252 26 H -0.281 1.281 27 H -0.212 1.212 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -17.894 26.959 32.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.038 4.038 3 N -0.317 5.317 4 C 0.027 3.973 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.141 4.141 8 C -0.138 4.138 9 C -0.157 4.157 10 C -0.144 4.144 11 C 0.322 3.678 12 O -0.454 6.454 13 C -0.712 4.712 14 H 0.214 0.786 15 C -0.201 4.201 16 S 2.608 3.392 17 O -0.989 6.989 18 O -0.975 6.975 19 C -0.594 4.594 20 C -0.597 4.597 21 H 0.043 0.957 22 C -0.183 4.183 23 N -0.577 5.577 24 Si 0.776 3.224 25 H -0.176 1.176 26 H -0.206 1.206 27 H -0.134 1.134 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.587 -16.335 26.904 31.807 hybrid contribution -0.144 0.107 -0.962 0.978 sum 4.443 -16.228 25.942 30.921 Atomic orbital electron populations 1.22318 0.94809 1.04222 1.02403 1.22234 0.95289 0.79885 1.06360 1.47966 1.63958 1.15884 1.03865 1.20558 0.93338 0.98361 0.85031 1.20248 0.95446 0.96725 0.99342 1.21342 0.97786 0.96174 0.96576 1.21526 0.92629 0.99929 1.00065 1.21497 1.00841 0.94280 0.97226 1.21359 0.96091 0.99152 0.99079 1.21267 0.94205 0.99658 0.99244 1.19640 0.76968 0.85504 0.85644 1.90830 1.47454 1.19545 1.87589 1.30559 1.12843 1.17567 1.10230 0.78638 1.21878 0.92915 0.98620 1.06678 1.07888 0.73831 0.78911 0.78522 1.93413 1.50714 1.69091 1.85692 1.93419 1.46078 1.72267 1.85765 1.28043 1.09180 1.10599 1.11550 1.20346 1.54257 0.92424 0.92684 0.95655 1.26231 0.92013 1.06197 0.93873 1.70053 1.47758 1.39320 1.00579 0.85584 0.81069 0.76169 0.79622 1.17642 1.20645 1.13411 0.93778 0.88314 0.91775 0.88025 0.86633 0.85429 0.91536 0.82832 0.83023 0.84031 0.85943 0.88605 0.86990 0.91883 0.86227 0.85789 0.85980 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 10.10 71.98 0.73 -1.09 16 2 C 0.08 0.89 5.72 86.38 0.49 1.38 16 3 N -0.59 -12.20 2.46 -826.14 -2.03 -14.23 16 4 C 0.15 2.88 5.53 85.63 0.47 3.36 16 5 C -0.12 -2.31 5.46 -19.86 -0.11 -2.42 16 6 C -0.10 -1.32 9.70 22.27 0.22 -1.10 16 7 C -0.12 -1.56 10.05 22.27 0.22 -1.33 16 8 C -0.12 -1.90 10.05 22.27 0.22 -1.67 16 9 C -0.14 -2.97 10.05 22.27 0.22 -2.74 16 10 C -0.12 -3.19 9.70 22.27 0.22 -2.97 16 11 C 0.54 16.88 6.85 87.66 0.60 17.48 16 12 O -0.57 -24.39 14.76 5.45 0.08 -24.31 16 13 C -0.60 -16.81 2.26 29.85 0.07 -16.74 16 14 H 0.20 3.58 6.12 -2.39 -0.01 3.56 16 15 C -0.14 -3.00 8.66 71.98 0.62 -2.38 16 16 S 2.42 108.26 3.59 -56.49 -0.20 108.05 16 17 O -0.99 -52.18 18.10 -127.37 -2.31 -54.48 16 18 O -0.98 -52.41 17.40 -122.76 -2.14 -54.55 16 19 C -0.46 -19.71 4.18 71.23 0.30 -19.42 16 20 C -0.56 -32.88 9.68 25.60 0.25 -32.63 16 21 H 0.03 1.73 7.96 -2.91 -0.02 1.71 16 22 C 0.02 0.98 5.47 84.66 0.46 1.45 16 23 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 24 Si 0.96 38.87 27.47 68.60 1.88 40.75 16 25 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 26 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.21 -6.89 6.54 99.48 0.65 -6.24 16 28 H 0.04 0.63 7.15 -2.39 -0.02 0.62 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.84 4.76 -2.39 -0.01 0.83 16 32 H 0.12 0.54 8.07 -2.39 -0.02 0.52 16 33 H 0.13 1.41 8.01 -2.39 -0.02 1.39 16 34 H 0.07 1.70 7.36 -2.39 -0.02 1.68 16 35 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 36 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.10 3.04 7.58 -2.91 -0.02 3.02 16 40 H 0.11 1.82 6.55 -2.39 -0.02 1.81 16 41 H 0.06 1.64 8.06 -2.39 -0.02 1.62 16 42 H 0.12 1.51 6.33 -2.39 -0.02 1.50 16 43 H 0.12 4.38 5.93 -2.39 -0.01 4.37 16 44 H 0.12 4.21 7.57 -2.39 -0.02 4.20 16 45 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -96.59 380.23 1.52 -95.07 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.93 Total: 22.88 kcal Atomic # 6 Polarization: -65.81 SS G_CDS: 4.99 Total: -60.82 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -1.73 Total: -72.60 kcal Atomic # 8 Polarization: -128.98 SS G_CDS: -4.36 Total: -133.34 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.88 Total: 40.75 kcal Atomic # 16 Polarization: 108.26 SS G_CDS: -0.20 Total: 108.05 kcal Total: -96.59 1.52 -95.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.313 kcal (2) G-P(sol) polarization free energy of solvation -96.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds