Wall clock time and date at job start Tue Mar 31 2020 22:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47353 * 2 1 4 4 C 1.50700 * 109.46935 * 239.99944 * 2 1 3 5 5 O 1.21278 * 120.00548 * 265.00048 * 4 2 1 6 6 N 1.34782 * 119.99764 * 85.00241 * 4 2 1 7 7 C 1.46505 * 120.00001 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47119 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.46922 * 305.00299 * 8 7 6 10 10 C 1.53006 * 109.47164 * 65.00050 * 8 7 6 11 11 C 1.50698 * 109.47342 * 185.00286 * 8 7 6 12 12 C 1.38245 * 119.99431 * 299.72934 * 11 8 7 13 13 C 1.38237 * 119.99269 * 179.78957 * 12 11 8 14 14 C 1.38234 * 120.00384 * 0.43420 * 13 12 11 15 15 C 1.38233 * 119.99643 * 359.81821 * 14 13 12 16 16 C 1.38228 * 120.00126 * 119.99813 * 11 8 7 17 17 S 1.81399 * 109.47050 * 120.00506 * 2 1 3 18 18 O 1.42096 * 108.58030 * 59.48135 * 17 2 1 19 19 O 1.42105 * 108.57890 * 190.51311 * 17 2 1 20 20 C 1.81406 * 101.91873 * 304.99843 * 17 2 1 21 21 C 1.50700 * 109.46899 * 180.02562 * 20 17 2 22 22 H 1.07996 * 120.00195 * 359.97438 * 21 20 17 23 23 C 1.37876 * 119.99784 * 179.97438 * 21 20 17 24 24 N 1.31517 * 120.00137 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00058 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47317 * 89.99876 * 25 23 21 27 27 H 1.48501 * 109.46899 * 209.99695 * 25 23 21 28 28 H 1.48500 * 109.46823 * 329.99498 * 25 23 21 29 29 H 1.09001 * 109.47046 * 299.99819 * 1 2 3 30 30 H 1.09000 * 109.47349 * 59.99636 * 1 2 3 31 31 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99790 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.46646 * 60.00028 * 7 6 4 34 34 H 1.08994 * 109.46912 * 300.00271 * 7 6 4 35 35 H 1.09001 * 109.47002 * 59.99738 * 10 8 7 36 36 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47050 * 300.00004 * 10 8 7 38 38 H 1.07995 * 119.99936 * 359.97438 * 12 11 8 39 39 H 1.08000 * 119.99610 * 180.27818 * 13 12 11 40 40 H 1.07998 * 120.00233 * 179.83582 * 14 13 12 41 41 H 1.08009 * 119.99828 * 179.97438 * 15 14 13 42 42 H 1.07992 * 120.00101 * 359.97438 * 16 11 8 43 43 H 1.09004 * 109.47010 * 299.99968 * 20 17 2 44 44 H 1.08991 * 109.47442 * 60.00046 * 20 17 2 45 45 H 0.96996 * 120.00538 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3207 -1.8872 -1.1761 6 7 2.1610 -0.0380 -2.3915 7 6 2.6499 -0.7285 -3.5876 8 6 2.7006 0.2545 -4.7589 9 1 1.7205 0.7126 -4.8915 10 6 3.7367 1.3421 -4.4675 11 6 3.0852 -0.4818 -6.0163 12 6 4.2980 -1.1416 -6.0872 13 6 4.6488 -1.8206 -7.2391 14 6 3.7911 -1.8323 -8.3231 15 6 2.5808 -1.1681 -8.2539 16 6 2.2279 -0.4926 -7.1005 17 16 2.1346 -0.8553 1.4810 18 8 1.6407 -2.1875 1.4679 19 8 3.5342 -0.6351 1.5913 20 6 1.2997 0.0575 2.8079 21 6 1.6911 -0.5249 4.1416 22 1 2.3734 -1.3608 4.1865 23 6 1.1780 0.0094 5.3044 24 7 1.5191 -0.4991 6.4683 25 14 -0.0017 1.4557 5.2267 26 1 -1.3960 0.9530 5.1360 27 1 0.1476 2.2826 6.4512 28 1 0.3056 2.2815 4.0314 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.9300 0.9031 -2.4350 33 1 1.9776 -1.5507 -3.8326 34 1 3.6491 -1.1203 -3.3980 35 1 4.7168 0.8840 -4.3348 36 1 3.7725 2.0426 -5.3018 37 1 3.4584 1.8746 -3.5581 38 1 4.9698 -1.1291 -5.2418 39 1 5.5943 -2.3399 -7.2930 40 1 4.0665 -2.3606 -9.2239 41 1 1.9108 -1.1768 -9.1010 42 1 1.2823 0.0262 -7.0464 43 1 1.5949 1.1061 2.7690 44 1 0.2203 -0.0210 2.6794 45 1 1.1579 -0.1235 7.2864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:26 Heat of formation + Delta-G solvation = -93.041023 kcal Electronic energy + Delta-G solvation = -26820.912713 eV Core-core repulsion = 22930.428486 eV Total energy + Delta-G solvation = -3890.484227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26709 -39.54210 -36.47475 -36.09974 -35.08955 -33.90230 -33.27734 -32.87829 -31.26775 -29.83855 -29.65210 -27.05019 -24.77431 -23.54187 -23.11136 -22.77297 -20.83808 -20.50838 -18.06918 -17.71405 -17.42154 -17.02718 -16.50505 -15.95664 -15.65822 -15.47109 -15.19516 -15.03451 -14.86312 -14.30152 -14.19361 -13.99811 -13.93605 -13.65135 -13.25194 -13.06894 -12.86044 -12.72182 -12.68975 -12.44844 -12.20615 -11.95277 -11.76511 -11.63801 -11.57919 -11.25528 -11.16387 -11.11522 -11.09738 -10.86757 -10.39588 -10.25252 -10.02867 -9.81472 -9.32579 -9.29567 -9.25417 -9.07673 -8.82927 -6.29851 -4.38308 0.68827 0.97740 1.05420 2.46991 2.87940 3.12836 3.17371 3.21809 3.42901 3.64647 4.19866 4.20986 4.26460 4.37667 4.42689 4.59636 4.65408 4.70691 4.75548 4.79156 4.91299 4.92533 4.97637 5.12007 5.18031 5.24242 5.33897 5.38866 5.44691 5.48432 5.56968 5.64593 5.68131 5.71503 5.80337 5.92518 6.10286 6.15104 6.17406 6.19306 6.25825 6.28590 6.64294 7.18658 7.19389 7.99108 8.04146 8.65095 9.23718 10.81365 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.002233 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.310205 B =12536.859007 C =12844.456202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.635 4.635 3 H 0.148 0.852 4 C 0.544 3.456 5 O -0.516 6.516 6 N -0.724 5.724 7 C 0.124 3.876 8 C -0.063 4.063 9 H 0.086 0.914 10 C -0.148 4.148 11 C -0.076 4.076 12 C -0.111 4.111 13 C -0.117 4.117 14 C -0.123 4.123 15 C -0.120 4.120 16 C -0.114 4.114 17 S 2.439 3.561 18 O -0.919 6.919 19 O -0.942 6.942 20 C -0.457 4.457 21 C -0.529 4.529 22 H 0.089 0.911 23 C 0.087 3.913 24 N -0.879 5.879 25 Si 0.881 3.119 26 H -0.270 1.270 27 H -0.281 1.281 28 H -0.263 1.263 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 6.802 -28.750 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.739 4.739 3 H 0.166 0.834 4 C 0.328 3.672 5 O -0.391 6.391 6 N -0.377 5.377 7 C 0.000 4.000 8 C -0.082 4.082 9 H 0.104 0.896 10 C -0.205 4.205 11 C -0.076 4.076 12 C -0.129 4.129 13 C -0.135 4.135 14 C -0.141 4.141 15 C -0.138 4.138 16 C -0.132 4.132 17 S 2.617 3.383 18 O -0.917 6.917 19 O -0.939 6.939 20 C -0.591 4.591 21 C -0.567 4.567 22 H 0.107 0.893 23 C -0.119 4.119 24 N -0.515 5.515 25 Si 0.707 3.293 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.187 1.187 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.185 5.240 -28.558 29.036 hybrid contribution -1.238 2.027 -0.171 2.382 sum -1.053 7.267 -28.729 29.653 Atomic orbital electron populations 1.21580 0.87909 1.05043 1.04643 1.30992 1.08902 1.15635 1.18415 0.83376 1.19402 0.77369 0.86769 0.83673 1.90885 1.48625 1.14940 1.84682 1.45872 1.68130 1.14161 1.09506 1.21484 1.00798 0.94795 0.82903 1.20372 1.00632 0.95489 0.91680 0.89569 1.21906 0.98876 0.97909 1.01804 1.19643 0.94772 0.98394 0.94823 1.21088 0.96334 0.97278 0.98224 1.21181 0.99788 0.99161 0.93398 1.21181 0.94581 0.99628 0.98712 1.21144 0.96881 0.97809 0.97950 1.21065 0.99292 0.99760 0.93094 1.08096 0.76607 0.77275 0.76333 1.93503 1.81634 1.31737 1.84781 1.93489 1.28857 1.86676 1.84906 1.28103 1.08469 1.09375 1.13157 1.20097 1.31265 1.19035 0.86313 0.89322 1.24894 0.95638 0.96634 0.94755 1.69863 1.43021 1.40903 0.97719 0.86752 0.81615 0.82565 0.78347 1.19530 1.20608 1.18742 0.89457 0.90834 0.89877 0.76322 0.90901 0.90752 0.91855 0.92030 0.91989 0.85808 0.85937 0.86145 0.86074 0.86063 0.89733 0.89858 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.88 37.16 0.33 -1.26 16 2 C -0.64 -9.16 3.15 -27.88 -0.09 -9.25 16 3 H 0.15 1.51 8.14 -51.92 -0.42 1.09 16 4 C 0.54 8.45 6.95 -10.98 -0.08 8.38 16 5 O -0.52 -10.45 15.48 -9.37 -0.15 -10.59 16 6 N -0.72 -7.78 5.28 -60.29 -0.32 -8.09 16 7 C 0.12 1.24 4.81 -4.04 -0.02 1.22 16 8 C -0.06 -0.45 2.60 -91.77 -0.24 -0.69 16 9 H 0.09 0.50 7.88 -51.93 -0.41 0.10 16 10 C -0.15 -0.96 8.88 37.16 0.33 -0.63 16 11 C -0.08 -0.60 4.78 -104.62 -0.50 -1.10 16 12 C -0.11 -0.91 8.76 -39.58 -0.35 -1.26 16 13 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 14 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 15 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 16 C -0.11 -0.84 9.67 -39.59 -0.38 -1.22 16 17 S 2.44 51.69 3.80 -107.50 -0.41 51.28 16 18 O -0.92 -22.74 17.21 -64.28 -1.11 -23.85 16 19 O -0.94 -22.82 18.10 -57.83 -1.05 -23.87 16 20 C -0.46 -9.94 4.02 36.01 0.14 -9.80 16 21 C -0.53 -14.81 9.68 -34.44 -0.33 -15.14 16 22 H 0.09 2.74 7.96 -52.49 -0.42 2.32 16 23 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 24 N -0.88 -26.12 13.96 55.43 0.77 -25.35 16 25 Si 0.88 19.82 27.47 -169.99 -4.67 15.15 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 29 H 0.09 0.93 6.39 -51.93 -0.33 0.60 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 2.93 7.65 -40.82 -0.31 2.62 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.82 7.59 -51.93 -0.39 0.43 16 35 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.37 7.18 -51.93 -0.37 -0.01 16 38 H 0.12 0.94 7.16 -52.49 -0.38 0.56 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.12 0.69 7.95 -52.49 -0.42 0.27 16 43 H 0.08 1.62 7.20 -51.92 -0.37 1.25 16 44 H 0.08 1.58 6.20 -51.93 -0.32 1.26 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -38.26 383.57 -10.27 -48.53 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.66 Total: 3.20 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: -2.47 Total: -32.20 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.45 Total: -33.44 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -2.30 Total: -58.30 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.67 Total: 15.15 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.41 Total: 51.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.26 -10.27 -48.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.510 kcal (2) G-P(sol) polarization free energy of solvation -38.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds