Wall clock time and date at job start Tue Mar 31 2020 22:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47353 * 2 1 4 4 C 1.50700 * 109.46935 * 239.99944 * 2 1 3 5 5 O 1.21278 * 120.00548 * 265.00048 * 4 2 1 6 6 N 1.34782 * 119.99764 * 85.00241 * 4 2 1 7 7 C 1.46505 * 120.00001 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47119 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.46922 * 305.00299 * 8 7 6 10 10 C 1.53006 * 109.47164 * 65.00050 * 8 7 6 11 11 C 1.50698 * 109.47342 * 185.00286 * 8 7 6 12 12 C 1.38245 * 119.99431 * 299.72934 * 11 8 7 13 13 C 1.38237 * 119.99269 * 179.78957 * 12 11 8 14 14 C 1.38234 * 120.00384 * 0.43420 * 13 12 11 15 15 C 1.38233 * 119.99643 * 359.81821 * 14 13 12 16 16 C 1.38228 * 120.00126 * 119.99813 * 11 8 7 17 17 S 1.81399 * 109.47050 * 120.00506 * 2 1 3 18 18 O 1.42096 * 108.58030 * 59.48135 * 17 2 1 19 19 O 1.42105 * 108.57890 * 190.51311 * 17 2 1 20 20 C 1.81406 * 101.91873 * 304.99843 * 17 2 1 21 21 C 1.50700 * 109.46899 * 180.02562 * 20 17 2 22 22 H 1.07996 * 120.00195 * 359.97438 * 21 20 17 23 23 C 1.37876 * 119.99784 * 179.97438 * 21 20 17 24 24 N 1.31517 * 120.00137 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00058 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47317 * 89.99876 * 25 23 21 27 27 H 1.48501 * 109.46899 * 209.99695 * 25 23 21 28 28 H 1.48500 * 109.46823 * 329.99498 * 25 23 21 29 29 H 1.09001 * 109.47046 * 299.99819 * 1 2 3 30 30 H 1.09000 * 109.47349 * 59.99636 * 1 2 3 31 31 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99790 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.46646 * 60.00028 * 7 6 4 34 34 H 1.08994 * 109.46912 * 300.00271 * 7 6 4 35 35 H 1.09001 * 109.47002 * 59.99738 * 10 8 7 36 36 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47050 * 300.00004 * 10 8 7 38 38 H 1.07995 * 119.99936 * 359.97438 * 12 11 8 39 39 H 1.08000 * 119.99610 * 180.27818 * 13 12 11 40 40 H 1.07998 * 120.00233 * 179.83582 * 14 13 12 41 41 H 1.08009 * 119.99828 * 179.97438 * 15 14 13 42 42 H 1.07992 * 120.00101 * 359.97438 * 16 11 8 43 43 H 1.09004 * 109.47010 * 299.99968 * 20 17 2 44 44 H 1.08991 * 109.47442 * 60.00046 * 20 17 2 45 45 H 0.96996 * 120.00538 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3207 -1.8872 -1.1761 6 7 2.1610 -0.0380 -2.3915 7 6 2.6499 -0.7285 -3.5876 8 6 2.7006 0.2545 -4.7589 9 1 1.7205 0.7126 -4.8915 10 6 3.7367 1.3421 -4.4675 11 6 3.0852 -0.4818 -6.0163 12 6 4.2980 -1.1416 -6.0872 13 6 4.6488 -1.8206 -7.2391 14 6 3.7911 -1.8323 -8.3231 15 6 2.5808 -1.1681 -8.2539 16 6 2.2279 -0.4926 -7.1005 17 16 2.1346 -0.8553 1.4810 18 8 1.6407 -2.1875 1.4679 19 8 3.5342 -0.6351 1.5913 20 6 1.2997 0.0575 2.8079 21 6 1.6911 -0.5249 4.1416 22 1 2.3734 -1.3608 4.1865 23 6 1.1780 0.0094 5.3044 24 7 1.5191 -0.4991 6.4683 25 14 -0.0017 1.4557 5.2267 26 1 -1.3960 0.9530 5.1360 27 1 0.1476 2.2826 6.4512 28 1 0.3056 2.2815 4.0314 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.9300 0.9031 -2.4350 33 1 1.9776 -1.5507 -3.8326 34 1 3.6491 -1.1203 -3.3980 35 1 4.7168 0.8840 -4.3348 36 1 3.7725 2.0426 -5.3018 37 1 3.4584 1.8746 -3.5581 38 1 4.9698 -1.1291 -5.2418 39 1 5.5943 -2.3399 -7.2930 40 1 4.0665 -2.3606 -9.2239 41 1 1.9108 -1.1768 -9.1010 42 1 1.2823 0.0262 -7.0464 43 1 1.5949 1.1061 2.7690 44 1 0.2203 -0.0210 2.6794 45 1 1.1579 -0.1235 7.2864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:26 Heat of formation + Delta-G solvation = -122.349033 kcal Electronic energy + Delta-G solvation = -26822.183604 eV Core-core repulsion = 22930.428486 eV Total energy + Delta-G solvation = -3891.755118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25317 -40.28884 -37.88720 -37.27091 -36.83426 -35.36318 -34.90358 -33.84404 -31.79310 -31.71148 -30.26177 -27.83716 -25.73099 -25.11502 -24.15375 -23.37087 -21.96731 -21.16244 -19.64898 -19.44856 -18.65139 -17.90875 -17.68367 -17.21653 -16.87388 -16.79334 -16.33215 -16.08987 -15.87352 -15.76269 -15.28626 -14.90234 -14.64983 -14.55084 -14.29799 -14.19638 -14.03176 -13.93262 -13.58887 -13.48861 -13.29518 -13.04534 -12.95691 -12.94831 -12.87843 -12.52545 -12.39103 -12.21076 -12.19478 -11.80608 -11.78325 -11.65300 -11.61351 -11.33195 -10.97553 -10.86032 -10.30744 -9.80863 -9.63269 -8.38922 -6.56822 -0.93237 0.42606 0.51073 1.28255 1.38792 1.44752 1.55364 1.79879 2.12685 2.34391 2.87060 2.90985 2.96655 3.18082 3.41028 3.68186 3.73424 3.78025 3.96804 3.98410 4.14275 4.17176 4.29813 4.38387 4.39591 4.57932 4.59460 4.62312 4.64214 4.67907 4.70545 4.78575 4.91544 5.05144 5.10930 5.12927 5.17969 5.22920 5.30015 5.33416 5.59291 5.64616 5.70591 5.87462 6.12463 6.24479 6.48655 6.96087 7.10035 8.77243 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.002233 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.310205 B =12536.859007 C =12844.456202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.596 4.596 3 H 0.206 0.794 4 C 0.533 3.467 5 O -0.575 6.575 6 N -0.694 5.694 7 C 0.122 3.878 8 C -0.049 4.049 9 H 0.110 0.890 10 C -0.148 4.148 11 C -0.087 4.087 12 C -0.130 4.130 13 C -0.132 4.132 14 C -0.131 4.131 15 C -0.127 4.127 16 C -0.121 4.121 17 S 2.420 3.580 18 O -0.977 6.977 19 O -0.993 6.993 20 C -0.461 4.461 21 C -0.557 4.557 22 H 0.026 0.974 23 C 0.015 3.985 24 N -0.940 5.940 25 Si 0.958 3.042 26 H -0.254 1.254 27 H -0.283 1.283 28 H -0.211 1.211 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.424 0.576 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 11.300 -31.960 34.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.708 4.708 3 H 0.223 0.777 4 C 0.318 3.682 5 O -0.455 6.455 6 N -0.348 5.348 7 C -0.002 4.002 8 C -0.068 4.068 9 H 0.128 0.872 10 C -0.206 4.206 11 C -0.088 4.088 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.145 4.145 16 C -0.138 4.138 17 S 2.607 3.393 18 O -0.974 6.974 19 O -0.990 6.990 20 C -0.594 4.594 21 C -0.595 4.595 22 H 0.044 0.956 23 C -0.185 4.185 24 N -0.578 5.578 25 Si 0.776 3.224 26 H -0.179 1.179 27 H -0.208 1.208 28 H -0.133 1.133 29 H 0.128 0.872 30 H 0.140 0.860 31 H 0.082 0.918 32 H 0.263 0.737 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.707 9.737 -31.752 33.322 hybrid contribution -0.260 0.552 0.686 0.918 sum -2.967 10.289 -31.066 32.860 Atomic orbital electron populations 1.21864 0.85056 1.05058 1.08202 1.30506 1.11033 1.16740 1.12540 0.77651 1.19673 0.77187 0.86261 0.85107 1.90886 1.51368 1.17635 1.85590 1.45654 1.65994 1.14985 1.08135 1.21544 0.99496 0.95566 0.83561 1.20302 1.02082 0.94659 0.89742 0.87194 1.21926 0.98096 0.97778 1.02753 1.19786 0.94773 0.98733 0.95489 1.21227 0.96943 0.98101 0.98486 1.21409 1.00550 0.99423 0.93618 1.21470 0.94669 0.99664 0.99133 1.21472 0.97088 0.97327 0.98627 1.21349 0.99866 0.99729 0.92892 1.07923 0.75812 0.77140 0.78446 1.93434 1.81975 1.35563 1.86445 1.93422 1.31794 1.87204 1.86594 1.28053 1.10724 1.10859 1.09796 1.20365 1.30721 1.18127 0.90295 0.95604 1.26240 0.97929 1.00695 0.93678 1.70055 1.45235 1.43466 0.99018 0.85579 0.78557 0.77892 0.80364 1.17850 1.20841 1.13271 0.87160 0.85960 0.91839 0.73655 0.92090 0.92461 0.93042 0.91044 0.90846 0.86242 0.85092 0.84490 0.84099 0.84119 0.85659 0.86035 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.88 71.98 0.64 -2.01 16 2 C -0.60 -14.94 3.15 29.85 0.09 -14.85 16 3 H 0.21 2.80 8.14 -2.39 -0.02 2.78 16 4 C 0.53 15.52 6.95 87.66 0.61 16.13 16 5 O -0.58 -23.78 15.48 11.25 0.17 -23.60 16 6 N -0.69 -12.60 5.28 -463.06 -2.45 -15.05 16 7 C 0.12 2.26 4.81 86.38 0.42 2.67 16 8 C -0.05 -0.56 2.60 -11.54 -0.03 -0.59 16 9 H 0.11 0.77 7.88 -2.39 -0.02 0.76 16 10 C -0.15 -1.50 8.88 71.98 0.64 -0.86 16 11 C -0.09 -1.24 4.78 -19.87 -0.09 -1.33 16 12 C -0.13 -2.09 8.76 22.27 0.20 -1.90 16 13 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 14 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 15 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 16 C -0.12 -1.48 9.67 22.27 0.22 -1.27 16 17 S 2.42 103.51 3.80 -56.49 -0.21 103.30 16 18 O -0.98 -51.14 17.21 -121.20 -2.09 -53.23 16 19 O -0.99 -50.10 18.10 -127.37 -2.31 -52.41 16 20 C -0.46 -19.15 4.02 71.24 0.29 -18.86 16 21 C -0.56 -32.29 9.68 25.60 0.25 -32.04 16 22 H 0.03 1.75 7.96 -2.91 -0.02 1.72 16 23 C 0.01 0.84 5.47 84.65 0.46 1.30 16 24 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 25 Si 0.96 38.64 27.47 68.60 1.88 40.53 16 26 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 27 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 28 H -0.21 -6.75 6.54 99.48 0.65 -6.10 16 29 H 0.11 1.58 6.39 -2.39 -0.02 1.57 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.42 3.82 7.65 -92.71 -0.71 3.11 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.28 7.59 -2.39 -0.02 1.27 16 35 H 0.05 0.65 7.37 -2.39 -0.02 0.63 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.56 7.18 -2.39 -0.02 0.55 16 38 H 0.12 1.91 7.16 -2.91 -0.02 1.89 16 39 H 0.13 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 42 H 0.14 1.10 7.95 -2.91 -0.02 1.08 16 43 H 0.13 4.20 7.20 -2.39 -0.02 4.18 16 44 H 0.12 4.13 6.20 -2.40 -0.01 4.11 16 45 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -95.60 383.57 -0.11 -95.71 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.23 Total: 20.98 kcal Atomic # 6 Polarization: -62.47 SS G_CDS: 4.35 Total: -58.12 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.15 Total: -73.16 kcal Atomic # 8 Polarization: -125.02 SS G_CDS: -4.22 Total: -129.24 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.88 Total: 40.53 kcal Atomic # 16 Polarization: 103.51 SS G_CDS: -0.21 Total: 103.30 kcal Total: -95.60 -0.11 -95.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.640 kcal (2) G-P(sol) polarization free energy of solvation -95.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds