Wall clock time and date at job start Tue Mar 31 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.34774 * 120.00072 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00066 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99838 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.47090 * 324.99691 * 8 6 5 10 10 C 1.53003 * 109.47349 * 84.99875 * 8 6 5 11 11 S 1.81401 * 109.47150 * 204.99993 * 8 6 5 12 12 O 1.42099 * 108.58054 * 299.48546 * 11 8 6 13 13 O 1.42102 * 108.57915 * 70.51242 * 11 8 6 14 14 C 1.81400 * 101.92270 * 184.99928 * 11 8 6 15 15 C 1.50700 * 109.47020 * 180.02562 * 14 11 8 16 16 H 1.07994 * 120.00400 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99644 * 180.02562 * 15 14 11 18 18 N 1.31509 * 120.00125 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99482 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47015 * 90.00334 * 19 17 15 21 21 H 1.48507 * 109.46871 * 209.99736 * 19 17 15 22 22 H 1.48495 * 109.47503 * 329.99938 * 19 17 15 23 23 C 1.50695 * 109.47062 * 239.99613 * 2 1 3 24 24 C 1.38236 * 120.00484 * 299.72550 * 23 2 1 25 25 C 1.38230 * 120.00240 * 179.81052 * 24 23 2 26 26 C 1.38238 * 119.99969 * 0.40258 * 25 24 23 27 27 C 1.38233 * 119.99840 * 359.85454 * 26 25 24 28 28 C 1.38231 * 120.00064 * 359.95480 * 27 26 25 29 29 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 30 30 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 31 31 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 33 33 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 34 34 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.47129 * 179.97438 * 10 8 6 36 36 H 1.08995 * 109.46691 * 300.00092 * 10 8 6 37 37 H 1.08996 * 109.46672 * 59.99946 * 10 8 6 38 38 H 1.09000 * 109.46957 * 299.99636 * 14 11 8 39 39 H 1.08993 * 109.47385 * 59.99882 * 14 11 8 40 40 H 0.97000 * 119.99768 * 179.97438 * 18 17 15 41 41 H 1.08007 * 119.99540 * 0.02562 * 24 23 2 42 42 H 1.08003 * 119.99999 * 180.23276 * 25 24 23 43 43 H 1.07997 * 120.00146 * 179.83300 * 26 25 24 44 44 H 1.08004 * 119.99586 * 179.97438 * 27 26 25 45 45 H 1.07999 * 119.99940 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 1.9962 -0.4130 3.6660 7 8 2.6270 -1.4427 3.7793 8 6 1.5970 0.3650 4.8933 9 1 1.6275 1.4322 4.6728 10 6 0.1783 -0.0297 5.3083 11 16 2.7480 -0.0061 6.2454 12 8 2.6844 -1.3979 6.5249 13 8 4.0050 0.5846 5.9449 14 6 2.0018 0.8962 7.6309 15 6 2.8403 0.7003 8.8677 16 1 3.7325 0.0933 8.8247 17 6 2.4677 1.2951 10.0545 18 7 1.3810 2.0338 10.1071 19 14 3.5067 1.0516 11.5877 20 1 4.5358 2.1196 11.6631 21 1 2.6374 1.1161 12.7901 22 1 4.1727 -0.2743 11.5290 23 6 2.0323 -0.7105 -1.2304 24 6 1.7031 -2.0356 -1.4463 25 6 2.1606 -2.6861 -2.5769 26 6 2.9543 -2.0140 -3.4875 27 6 3.2879 -0.6904 -3.2689 28 6 2.8271 -0.0388 -2.1403 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1262 -0.7995 1.2057 33 1 1.6052 -1.7198 1.2952 34 1 1.1481 0.8591 2.3517 35 1 -0.1103 0.5327 6.1963 36 1 -0.5132 0.1933 4.4959 37 1 0.1479 -1.0967 5.5287 38 1 1.9540 1.9580 7.3893 39 1 0.9952 0.5188 7.8104 40 1 1.1187 2.4520 10.9421 41 1 1.0855 -2.5616 -0.7333 42 1 1.9003 -3.7203 -2.7474 43 1 3.3140 -2.5230 -4.3694 44 1 3.9084 -0.1654 -3.9802 45 1 3.0875 0.9954 -1.9698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:34 Heat of formation + Delta-G solvation = -98.306832 kcal Electronic energy + Delta-G solvation = -26752.236186 eV Core-core repulsion = 22861.523616 eV Total energy + Delta-G solvation = -3890.712570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21212 -39.48392 -36.42263 -35.97235 -34.97070 -33.81220 -33.34714 -32.79587 -31.24083 -29.68496 -29.03635 -26.97760 -24.68432 -23.59408 -23.42119 -22.75699 -20.78033 -20.46493 -18.02003 -17.57234 -17.19773 -16.87786 -16.36954 -15.80074 -15.65734 -15.29924 -15.20309 -15.08083 -14.68516 -14.28942 -14.17547 -14.03042 -13.71573 -13.63364 -13.32203 -12.92021 -12.73008 -12.60123 -12.43461 -12.37581 -11.94558 -11.81876 -11.70867 -11.59456 -11.38078 -11.22462 -11.07294 -11.05171 -11.00015 -10.87752 -10.59317 -10.16876 -9.91663 -9.77596 -9.25721 -9.21324 -9.08790 -9.02399 -8.70387 -6.33632 -4.42313 0.86261 1.00728 1.08158 2.55762 2.96454 3.23409 3.28590 3.36050 3.45879 3.78615 4.22458 4.29079 4.29870 4.46055 4.57191 4.63583 4.67882 4.74230 4.80990 4.89183 4.96212 5.01896 5.11113 5.14593 5.20560 5.34338 5.35757 5.41524 5.52512 5.58471 5.67403 5.70013 5.73275 5.77195 5.81505 6.08683 6.13511 6.19964 6.25497 6.28932 6.63277 6.67009 6.67473 7.26555 7.49246 7.74539 8.07197 8.59398 9.24577 10.78226 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031404 B = 0.002131 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.392773 B =13135.965981 C =13388.216578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 H 0.087 0.913 4 C 0.124 3.876 5 N -0.724 5.724 6 C 0.543 3.457 7 O -0.519 6.519 8 C -0.632 4.632 9 H 0.147 0.853 10 C -0.132 4.132 11 S 2.415 3.585 12 O -0.929 6.929 13 O -0.952 6.952 14 C -0.403 4.403 15 C -0.528 4.528 16 H 0.073 0.927 17 C 0.075 3.925 18 N -0.882 5.882 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.266 1.266 23 C -0.075 4.075 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.113 4.113 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.402 0.598 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 -1.243 -25.219 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 H 0.105 0.895 4 C 0.001 3.999 5 N -0.377 5.377 6 C 0.328 3.672 7 O -0.394 6.394 8 C -0.736 4.736 9 H 0.165 0.835 10 C -0.190 4.190 11 S 2.596 3.404 12 O -0.926 6.926 13 O -0.949 6.949 14 C -0.538 4.538 15 C -0.567 4.567 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.518 5.518 19 Si 0.732 3.268 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.190 1.190 23 C -0.076 4.076 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.137 4.137 28 C -0.131 4.131 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.237 0.763 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.283 -2.431 -25.173 25.650 hybrid contribution -0.560 1.012 0.484 1.254 sum -4.844 -1.419 -24.689 25.199 Atomic orbital electron populations 1.21888 0.93524 1.02731 1.02165 1.20379 0.96724 0.99684 0.91492 0.89458 1.21469 1.00752 0.95347 0.82381 1.45881 1.58460 1.28047 1.05339 1.19483 0.78984 0.84984 0.83754 1.90872 1.38843 1.23494 1.86194 1.30956 1.17264 1.09832 1.15498 0.83521 1.21567 0.90111 1.03998 1.03348 1.08808 0.76669 0.77361 0.77605 1.93480 1.86307 1.30305 1.82497 1.93465 1.37581 1.79615 1.84246 1.27606 1.08227 1.08331 1.09636 1.20365 1.10102 1.33955 0.92287 0.90937 1.24921 0.95136 0.93928 0.99086 1.69937 1.23289 1.31031 1.27570 0.86346 0.79990 0.79470 0.81033 1.19913 1.20649 1.18997 1.19647 0.97951 0.94310 0.95669 1.21060 1.00086 0.94191 0.97617 1.21167 0.97981 0.99966 0.94489 1.21177 0.98564 0.94892 0.99496 1.21149 0.99992 0.95003 0.97596 1.21088 0.97649 1.00006 0.94406 0.92010 0.92066 0.92019 0.90893 0.90908 0.76310 0.88992 0.91091 0.90185 0.89695 0.89254 0.92228 0.85909 0.85996 0.86162 0.86045 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.88 37.16 0.33 -0.61 16 2 C -0.06 -0.49 2.60 -91.78 -0.24 -0.72 16 3 H 0.09 0.58 7.88 -51.93 -0.41 0.17 16 4 C 0.12 1.31 4.80 -4.04 -0.02 1.29 16 5 N -0.72 -8.33 5.28 -60.29 -0.32 -8.65 16 6 C 0.54 8.90 6.95 -10.99 -0.08 8.83 16 7 O -0.52 -10.86 15.48 -9.37 -0.15 -11.01 16 8 C -0.63 -9.80 3.15 -27.88 -0.09 -9.89 16 9 H 0.15 1.71 8.14 -51.92 -0.42 1.29 16 10 C -0.13 -1.74 8.88 37.16 0.33 -1.41 16 11 S 2.42 52.98 3.80 -107.50 -0.41 52.57 16 12 O -0.93 -23.42 17.21 -64.28 -1.11 -24.52 16 13 O -0.95 -23.59 18.10 -57.83 -1.05 -24.64 16 14 C -0.40 -9.42 4.95 36.01 0.18 -9.24 16 15 C -0.53 -14.60 9.13 -34.44 -0.31 -14.92 16 16 H 0.07 2.02 7.71 -52.49 -0.40 1.61 16 17 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 18 N -0.88 -24.35 13.29 55.43 0.74 -23.61 16 19 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.08 -0.62 4.78 -104.63 -0.50 -1.12 16 24 C -0.11 -0.93 8.76 -39.58 -0.35 -1.28 16 25 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 26 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 27 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 28 C -0.11 -0.90 9.67 -39.58 -0.38 -1.28 16 29 H 0.06 0.36 7.18 -51.93 -0.37 -0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.41 7.40 -51.93 -0.38 0.03 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.81 7.56 -51.93 -0.39 0.41 16 34 H 0.40 3.27 7.65 -40.82 -0.31 2.96 16 35 H 0.09 1.16 6.39 -51.93 -0.33 0.83 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16 39 H 0.09 1.98 6.77 -51.93 -0.35 1.63 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.12 0.92 7.16 -52.48 -0.38 0.55 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.78 7.95 -52.49 -0.42 0.36 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -37.12 387.16 -10.59 -47.70 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.69 Total: 2.61 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: -2.42 Total: -32.30 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.42 Total: -32.26 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -2.30 Total: -60.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 52.98 SS G_CDS: -0.41 Total: 52.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.12 -10.59 -47.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.605 kcal (2) G-P(sol) polarization free energy of solvation -37.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds