Wall clock time and date at job start Tue Mar 31 2020 22:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.34774 * 120.00072 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00066 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99838 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.47090 * 324.99691 * 8 6 5 10 10 C 1.53003 * 109.47349 * 84.99875 * 8 6 5 11 11 S 1.81401 * 109.47150 * 204.99993 * 8 6 5 12 12 O 1.42099 * 108.58054 * 299.48546 * 11 8 6 13 13 O 1.42102 * 108.57915 * 70.51242 * 11 8 6 14 14 C 1.81400 * 101.92270 * 184.99928 * 11 8 6 15 15 C 1.50700 * 109.47020 * 180.02562 * 14 11 8 16 16 H 1.07994 * 120.00400 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99644 * 180.02562 * 15 14 11 18 18 N 1.31509 * 120.00125 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99482 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47015 * 90.00334 * 19 17 15 21 21 H 1.48507 * 109.46871 * 209.99736 * 19 17 15 22 22 H 1.48495 * 109.47503 * 329.99938 * 19 17 15 23 23 C 1.50695 * 109.47062 * 239.99613 * 2 1 3 24 24 C 1.38236 * 120.00484 * 299.72550 * 23 2 1 25 25 C 1.38230 * 120.00240 * 179.81052 * 24 23 2 26 26 C 1.38238 * 119.99969 * 0.40258 * 25 24 23 27 27 C 1.38233 * 119.99840 * 359.85454 * 26 25 24 28 28 C 1.38231 * 120.00064 * 359.95480 * 27 26 25 29 29 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 30 30 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 31 31 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 33 33 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 34 34 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.47129 * 179.97438 * 10 8 6 36 36 H 1.08995 * 109.46691 * 300.00092 * 10 8 6 37 37 H 1.08996 * 109.46672 * 59.99946 * 10 8 6 38 38 H 1.09000 * 109.46957 * 299.99636 * 14 11 8 39 39 H 1.08993 * 109.47385 * 59.99882 * 14 11 8 40 40 H 0.97000 * 119.99768 * 179.97438 * 18 17 15 41 41 H 1.08007 * 119.99540 * 0.02562 * 24 23 2 42 42 H 1.08003 * 119.99999 * 180.23276 * 25 24 23 43 43 H 1.07997 * 120.00146 * 179.83300 * 26 25 24 44 44 H 1.08004 * 119.99586 * 179.97438 * 27 26 25 45 45 H 1.07999 * 119.99940 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 1.9962 -0.4130 3.6660 7 8 2.6270 -1.4427 3.7793 8 6 1.5970 0.3650 4.8933 9 1 1.6275 1.4322 4.6728 10 6 0.1783 -0.0297 5.3083 11 16 2.7480 -0.0061 6.2454 12 8 2.6844 -1.3979 6.5249 13 8 4.0050 0.5846 5.9449 14 6 2.0018 0.8962 7.6309 15 6 2.8403 0.7003 8.8677 16 1 3.7325 0.0933 8.8247 17 6 2.4677 1.2951 10.0545 18 7 1.3810 2.0338 10.1071 19 14 3.5067 1.0516 11.5877 20 1 4.5358 2.1196 11.6631 21 1 2.6374 1.1161 12.7901 22 1 4.1727 -0.2743 11.5290 23 6 2.0323 -0.7105 -1.2304 24 6 1.7031 -2.0356 -1.4463 25 6 2.1606 -2.6861 -2.5769 26 6 2.9543 -2.0140 -3.4875 27 6 3.2879 -0.6904 -3.2689 28 6 2.8271 -0.0388 -2.1403 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1262 -0.7995 1.2057 33 1 1.6052 -1.7198 1.2952 34 1 1.1481 0.8591 2.3517 35 1 -0.1103 0.5327 6.1963 36 1 -0.5132 0.1933 4.4959 37 1 0.1479 -1.0967 5.5287 38 1 1.9540 1.9580 7.3893 39 1 0.9952 0.5188 7.8104 40 1 1.1187 2.4520 10.9421 41 1 1.0855 -2.5616 -0.7333 42 1 1.9003 -3.7203 -2.7474 43 1 3.3140 -2.5230 -4.3694 44 1 3.9084 -0.1654 -3.9802 45 1 3.0875 0.9954 -1.9698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:33 Heat of formation + Delta-G solvation = -124.455993 kcal Electronic energy + Delta-G solvation = -26753.370099 eV Core-core repulsion = 22861.523616 eV Total energy + Delta-G solvation = -3891.846483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25057 -40.28738 -37.83807 -37.26718 -36.80372 -35.44711 -34.89425 -33.82920 -31.79197 -31.00011 -30.25812 -27.81633 -25.75819 -25.53621 -24.14624 -23.37548 -21.97460 -21.15912 -19.64632 -19.13498 -18.55473 -17.87160 -17.68167 -17.24516 -16.86944 -16.56734 -16.52906 -16.03174 -15.91574 -15.86474 -15.20425 -14.89736 -14.54911 -14.46820 -14.22915 -14.10298 -14.05890 -13.86135 -13.54630 -13.40686 -13.31187 -13.04598 -12.95453 -12.92293 -12.85416 -12.69768 -12.49876 -12.38476 -12.20925 -11.80771 -11.78000 -11.65822 -11.60035 -11.31031 -10.83061 -10.74130 -10.30907 -9.80863 -9.63192 -8.39742 -6.54542 -0.84688 0.42688 0.51131 1.27697 1.39290 1.39440 1.51938 1.81502 2.14686 2.33479 2.87259 2.93667 2.98631 3.19806 3.42475 3.67468 3.74959 3.79686 3.96867 3.97960 4.14138 4.17340 4.29968 4.37860 4.59290 4.60949 4.62091 4.63784 4.70084 4.77729 4.78750 4.79260 4.92305 5.05490 5.11503 5.13017 5.18034 5.22990 5.33489 5.39140 5.59236 5.64429 5.70582 5.76785 6.12400 6.23532 6.52649 6.94573 7.15045 8.72258 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031404 B = 0.002131 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.392773 B =13135.965981 C =13388.216578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 H 0.103 0.897 4 C 0.122 3.878 5 N -0.696 5.696 6 C 0.535 3.465 7 O -0.573 6.573 8 C -0.599 4.599 9 H 0.197 0.803 10 C -0.138 4.138 11 S 2.415 3.585 12 O -0.976 6.976 13 O -0.993 6.993 14 C -0.410 4.410 15 C -0.566 4.566 16 H 0.054 0.946 17 C 0.031 3.969 18 N -0.901 5.901 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.265 1.265 22 H -0.271 1.271 23 C -0.087 4.087 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.128 4.128 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.423 0.577 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.275 0.725 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 0.364 -26.838 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 H 0.121 0.879 4 C -0.001 4.001 5 N -0.349 5.349 6 C 0.320 3.680 7 O -0.453 6.453 8 C -0.711 4.711 9 H 0.214 0.786 10 C -0.196 4.196 11 S 2.602 3.398 12 O -0.973 6.973 13 O -0.990 6.990 14 C -0.544 4.544 15 C -0.604 4.604 16 H 0.072 0.928 17 C -0.173 4.173 18 N -0.538 5.538 19 Si 0.780 3.220 20 H -0.189 1.189 21 H -0.189 1.189 22 H -0.195 1.195 23 C -0.088 4.088 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.142 4.142 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.262 0.738 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.791 -0.788 -26.755 27.386 hybrid contribution -0.152 0.512 0.805 0.966 sum -5.944 -0.276 -25.950 26.623 Atomic orbital electron populations 1.21895 0.92354 1.02781 1.03143 1.20309 0.97552 0.99797 0.89406 0.87926 1.21554 0.99771 0.95646 0.83123 1.45679 1.56899 1.28330 1.03981 1.19624 0.78785 0.84443 0.85139 1.90868 1.41514 1.25922 1.86962 1.30503 1.16008 1.12865 1.11707 0.78562 1.21762 0.89048 1.03214 1.05587 1.08169 0.77011 0.75988 0.78638 1.93421 1.87278 1.32439 1.84148 1.93407 1.40775 1.79776 1.85059 1.27569 1.08057 1.09236 1.09502 1.20709 1.10546 1.34408 0.94767 0.92819 1.25677 0.96304 0.93621 1.01669 1.69968 1.23980 1.31241 1.28597 0.85564 0.78991 0.79251 0.78216 1.18913 1.18928 1.19545 1.19779 0.98421 0.94464 0.96127 1.21227 1.00584 0.94602 0.98069 1.21425 0.98121 1.00769 0.94520 1.21475 0.98279 0.95155 1.00021 1.21455 1.00025 0.95229 0.97889 1.21347 0.97489 1.00836 0.94531 0.90835 0.91243 0.92507 0.92762 0.91546 0.73805 0.88173 0.86289 0.91798 0.88609 0.88296 0.91607 0.85774 0.84781 0.84424 0.84279 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.88 71.98 0.64 -0.80 16 2 C -0.05 -0.67 2.60 -11.54 -0.03 -0.70 16 3 H 0.10 1.02 7.88 -2.39 -0.02 1.01 16 4 C 0.12 2.43 4.80 86.38 0.41 2.84 16 5 N -0.70 -14.10 5.28 -463.05 -2.45 -16.55 16 6 C 0.54 16.73 6.95 87.66 0.61 17.34 16 7 O -0.57 -24.32 15.48 11.23 0.17 -24.15 16 8 C -0.60 -17.23 3.15 29.85 0.09 -17.14 16 9 H 0.20 3.69 8.14 -2.39 -0.02 3.67 16 10 C -0.14 -3.22 8.88 71.98 0.64 -2.58 16 11 S 2.41 107.68 3.80 -56.49 -0.21 107.46 16 12 O -0.98 -51.32 17.21 -121.20 -2.09 -53.41 16 13 O -0.99 -50.58 18.10 -127.37 -2.31 -52.88 16 14 C -0.41 -19.28 4.95 71.24 0.35 -18.93 16 15 C -0.57 -32.03 9.13 25.60 0.23 -31.79 16 16 H 0.05 3.14 7.71 -2.91 -0.02 3.12 16 17 C 0.03 1.70 5.46 84.66 0.46 2.16 16 18 N -0.90 -49.36 13.29 21.45 0.28 -49.07 16 19 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 C -0.09 -1.33 4.78 -19.87 -0.09 -1.42 16 24 C -0.13 -2.02 8.76 22.27 0.20 -1.83 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 26 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 27 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 28 C -0.12 -1.75 9.67 22.27 0.22 -1.53 16 29 H 0.07 0.56 7.18 -2.39 -0.02 0.54 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.64 7.40 -2.39 -0.02 0.62 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.43 7.56 -2.38 -0.02 1.42 16 34 H 0.42 4.97 7.65 -92.71 -0.71 4.26 16 35 H 0.10 2.23 6.39 -2.39 -0.02 2.21 16 36 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 4.22 8.14 -2.39 -0.02 4.20 16 39 H 0.10 4.39 6.77 -2.39 -0.02 4.37 16 40 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.12 1.83 7.16 -2.91 -0.02 1.81 16 42 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 1.43 7.95 -2.91 -0.02 1.41 16 Total: -1.00 -84.37 387.16 0.12 -84.25 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.28 Total: 18.31 kcal Atomic # 6 Polarization: -63.51 SS G_CDS: 4.40 Total: -59.11 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -2.16 Total: -65.62 kcal Atomic # 8 Polarization: -126.22 SS G_CDS: -4.22 Total: -130.43 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 107.68 SS G_CDS: -0.21 Total: 107.46 kcal Total: -84.37 0.12 -84.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.205 kcal (2) G-P(sol) polarization free energy of solvation -84.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds