Wall clock time and date at job start Tue Mar 31 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47094 * 2 1 4 4 C 1.50698 * 109.47015 * 119.99953 * 2 1 3 5 5 C 1.38129 * 120.03870 * 305.00938 * 4 2 1 6 6 C 1.38261 * 120.07086 * 179.72381 * 5 4 2 7 7 C 1.38304 * 120.14500 * 0.28131 * 6 5 4 8 8 C 1.38090 * 120.06528 * 359.97438 * 7 6 5 9 9 C 1.38857 * 120.03585 * 125.26503 * 4 2 1 10 10 N 1.39935 * 120.07014 * 359.97438 * 9 4 2 11 11 C 1.34776 * 119.99662 * 205.14708 * 10 9 4 12 12 O 1.21286 * 120.00399 * 5.49772 * 11 10 9 13 13 C 1.50697 * 119.99513 * 185.49928 * 11 10 9 14 14 H 1.09005 * 109.47642 * 40.00121 * 13 11 10 15 15 C 1.53003 * 109.47579 * 279.99924 * 13 11 10 16 16 S 1.81394 * 109.47088 * 159.99931 * 13 11 10 17 17 O 1.42100 * 108.58096 * 294.48793 * 16 13 11 18 18 O 1.42093 * 108.57933 * 65.51329 * 16 13 11 19 19 C 1.81399 * 101.92362 * 180.02562 * 16 13 11 20 20 C 1.50702 * 109.47396 * 179.97438 * 19 16 13 21 21 H 1.08006 * 119.99876 * 0.02562 * 20 19 16 22 22 C 1.37872 * 120.00491 * 179.97438 * 20 19 16 23 23 N 1.31524 * 119.99789 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00522 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46999 * 89.99831 * 24 22 20 26 26 H 1.48492 * 109.47252 * 209.99955 * 24 22 20 27 27 H 1.48502 * 109.46855 * 330.00336 * 24 22 20 28 28 H 1.08996 * 109.47174 * 299.99674 * 1 2 3 29 29 H 1.08998 * 109.47523 * 60.00433 * 1 2 3 30 30 H 1.09007 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47182 * 239.99902 * 2 1 3 32 32 H 1.08998 * 109.47324 * 300.00114 * 3 2 1 33 33 H 1.09002 * 109.47186 * 59.99905 * 3 2 1 34 34 H 1.08998 * 109.47007 * 180.02562 * 3 2 1 35 35 H 1.07997 * 119.96367 * 0.02562 * 5 4 2 36 36 H 1.08006 * 119.92773 * 180.25195 * 6 5 4 37 37 H 1.07997 * 119.96619 * 179.97438 * 7 6 5 38 38 H 1.08004 * 120.03178 * 180.02562 * 8 7 6 39 39 H 0.97000 * 119.99353 * 25.13877 * 10 9 4 40 40 H 1.09002 * 109.46653 * 59.99643 * 15 13 11 41 41 H 1.08996 * 109.47333 * 180.02562 * 15 13 11 42 42 H 1.08999 * 109.46403 * 300.00555 * 15 13 11 43 43 H 1.09001 * 109.47524 * 299.99892 * 19 16 13 44 44 H 1.09007 * 109.47289 * 60.00125 * 19 16 13 45 45 H 0.96994 * 119.99894 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6159 -0.3025 2.4828 6 6 2.0719 -0.9574 3.6118 7 6 2.9504 -2.0188 3.4919 8 6 3.3745 -2.4281 2.2430 9 6 2.9183 -1.7724 1.1069 10 7 3.3458 -2.1851 -0.1601 11 6 3.7620 -3.4527 -0.3510 12 8 3.6727 -4.2622 0.5478 13 6 4.3382 -3.8641 -1.6812 14 1 4.9740 -3.0659 -2.0644 15 6 3.2009 -4.1292 -2.6698 16 16 5.3223 -5.3736 -1.4730 17 8 6.4444 -5.0733 -0.6545 18 8 4.4528 -6.4326 -1.0968 19 6 5.9057 -5.6769 -3.1636 20 6 6.7591 -6.9188 -3.1854 21 1 6.9328 -7.4707 -2.2734 22 6 7.3174 -7.3511 -4.3696 23 7 7.1055 -6.6792 -5.4803 24 14 8.3746 -8.8909 -4.3968 25 1 7.5175 -10.0753 -4.6566 26 1 9.3940 -8.7725 -5.4700 27 1 9.0528 -9.0488 -3.0851 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4425 -0.0005 35 1 0.9297 0.5258 2.5798 36 1 1.7417 -0.6391 4.5897 37 1 3.3050 -2.5281 4.3757 38 1 4.0602 -3.2574 2.1500 39 1 3.3424 -1.5588 -0.9008 40 1 2.6096 -3.2221 -2.7949 41 1 3.6178 -4.4272 -3.6318 42 1 2.5652 -4.9273 -2.2866 43 1 5.0497 -5.8123 -3.8246 44 1 6.4956 -4.8252 -3.5027 45 1 7.4979 -6.9836 -6.3135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905269017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:44 Heat of formation + Delta-G solvation = -90.954204 kcal Electronic energy + Delta-G solvation = -27610.771063 eV Core-core repulsion = 23720.377327 eV Total energy + Delta-G solvation = -3890.393736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00613 -39.03276 -36.07507 -35.68758 -35.12435 -34.87877 -33.59642 -33.23924 -30.10916 -29.44970 -29.00609 -27.46978 -25.08822 -23.96180 -23.64221 -22.67361 -20.60832 -20.25987 -18.55107 -17.78502 -17.41531 -16.97746 -16.08710 -15.78647 -15.58109 -15.36369 -15.24804 -14.77855 -14.49086 -14.26045 -14.08138 -13.95426 -13.89594 -13.82707 -12.92606 -12.76538 -12.68135 -12.48866 -12.40512 -12.30526 -12.12130 -11.95289 -11.81837 -11.48415 -11.42470 -11.13408 -11.08127 -11.07817 -11.01295 -10.91228 -10.63493 -10.61748 -10.25193 -9.91021 -9.81259 -9.13979 -8.86977 -8.73754 -8.18127 -6.37222 -4.46483 0.76147 1.12117 1.28369 2.39397 2.76336 3.21311 3.26617 3.33624 3.67038 3.69062 4.14980 4.26004 4.34269 4.45393 4.46773 4.75430 4.85169 4.89267 4.96322 4.97057 4.98824 5.03850 5.20959 5.25992 5.29763 5.36963 5.47214 5.49416 5.51222 5.56683 5.63520 5.65121 5.86003 5.91042 5.95056 6.00175 6.13329 6.28367 6.36545 6.47553 6.57130 6.61420 6.92343 7.10280 7.44817 7.70181 7.82911 8.55209 9.20910 10.74643 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.002766 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.909478 B =10120.265861 C =10862.272351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.109 4.109 5 C -0.097 4.097 6 C -0.139 4.139 7 C -0.101 4.101 8 C -0.129 4.129 9 C 0.152 3.848 10 N -0.663 5.663 11 C 0.547 3.453 12 O -0.501 6.501 13 C -0.635 4.635 14 H 0.152 0.848 15 C -0.134 4.134 16 S 2.416 3.584 17 O -0.947 6.947 18 O -0.930 6.930 19 C -0.402 4.402 20 C -0.530 4.530 21 H 0.073 0.927 22 C 0.076 3.924 23 N -0.882 5.882 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.281 1.281 27 H -0.266 1.266 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.148 0.852 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 17.587 8.355 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.157 4.157 7 C -0.120 4.120 8 C -0.149 4.149 9 C 0.058 3.942 10 N -0.308 5.308 11 C 0.333 3.667 12 O -0.375 6.375 13 C -0.738 4.738 14 H 0.170 0.830 15 C -0.192 4.192 16 S 2.595 3.405 17 O -0.944 6.944 18 O -0.927 6.927 19 C -0.537 4.537 20 C -0.568 4.568 21 H 0.091 0.909 22 C -0.130 4.130 23 N -0.518 5.518 24 Si 0.732 3.268 25 H -0.198 1.198 26 H -0.206 1.206 27 H -0.190 1.190 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.166 0.834 39 H 0.250 0.750 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.168 16.590 9.569 22.691 hybrid contribution 0.369 0.279 -1.239 1.323 sum -11.799 16.869 8.330 22.208 Atomic orbital electron populations 1.21838 0.93920 1.02236 1.01961 1.20039 0.96477 0.95947 0.95036 1.21871 1.01300 0.94864 1.02101 1.19535 0.98050 0.97943 0.95674 1.20712 0.99835 0.99761 0.91220 1.21098 0.99247 0.96969 0.98429 1.21078 0.97298 0.96530 0.97085 1.21518 1.01108 1.01371 0.90888 1.17657 0.95925 0.95966 0.84667 1.43511 1.64367 1.12358 1.10606 1.19651 0.77128 0.81747 0.88152 1.90819 1.53072 1.50279 1.43300 1.31072 1.13997 1.27807 1.00889 0.82990 1.21586 0.95827 1.03924 0.97863 1.08877 0.75168 0.74934 0.81474 1.93471 1.49316 1.84042 1.67582 1.93475 1.67124 1.49186 1.82948 1.27600 1.07174 1.06693 1.12208 1.20357 1.31993 1.08195 0.96304 0.90889 1.24919 0.95702 0.97526 0.94844 1.69938 1.43480 1.39141 0.99245 0.86341 0.79887 0.82065 0.78540 1.19822 1.20608 1.18983 0.92287 0.92283 0.92413 0.91029 0.92229 0.92243 0.92474 0.85897 0.86105 0.85650 0.83411 0.75025 0.91012 0.88813 0.89963 0.89264 0.89595 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.95 37.16 0.33 -0.69 16 2 C -0.06 -0.45 2.98 -91.78 -0.27 -0.72 16 3 C -0.14 -0.95 9.05 37.16 0.34 -0.62 16 4 C -0.11 -1.14 4.80 -104.43 -0.50 -1.64 16 5 C -0.10 -0.91 8.75 -39.61 -0.35 -1.26 16 6 C -0.14 -1.36 10.04 -39.55 -0.40 -1.76 16 7 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 8 C -0.13 -1.86 8.72 -39.39 -0.34 -2.20 16 9 C 0.15 2.00 6.41 -83.69 -0.54 1.46 16 10 N -0.66 -8.38 5.05 -9.86 -0.05 -8.43 16 11 C 0.55 8.93 6.81 -10.99 -0.07 8.86 16 12 O -0.50 -10.11 12.81 -3.36 -0.04 -10.15 16 13 C -0.63 -9.65 3.11 -27.88 -0.09 -9.74 16 14 H 0.15 1.72 8.14 -51.92 -0.42 1.30 16 15 C -0.13 -1.71 8.93 37.16 0.33 -1.38 16 16 S 2.42 52.02 3.59 -107.50 -0.39 51.64 16 17 O -0.95 -23.15 18.10 -57.83 -1.05 -24.19 16 18 O -0.93 -22.86 17.40 -62.66 -1.09 -23.95 16 19 C -0.40 -9.26 5.11 36.01 0.18 -9.08 16 20 C -0.53 -14.49 9.13 -34.44 -0.31 -14.80 16 21 H 0.07 2.01 7.71 -52.48 -0.40 1.61 16 22 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 23 N -0.88 -24.15 13.29 55.43 0.74 -23.41 16 24 Si 0.91 20.84 29.54 -169.99 -5.02 15.81 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.06 0.38 7.13 -51.93 -0.37 0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.54 5.98 -51.93 -0.31 0.23 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 7.70 -51.93 -0.40 -0.03 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.12 0.88 7.10 -52.49 -0.37 0.51 16 36 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.15 2.49 5.79 -52.48 -0.30 2.18 16 39 H 0.41 3.77 6.91 -40.82 -0.28 3.49 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.12 6.55 -51.93 -0.34 0.78 16 42 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 43 H 0.09 1.94 6.87 -51.92 -0.36 1.59 16 44 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -35.75 380.61 -9.85 -45.60 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.50 Total: 4.55 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: -2.18 Total: -33.20 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.69 Total: -31.84 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -2.18 Total: -58.30 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 52.02 SS G_CDS: -0.39 Total: 51.64 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.75 -9.85 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.356 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds