Wall clock time and date at job start Tue Mar 31 2020 22:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47094 * 2 1 4 4 C 1.50698 * 109.47015 * 119.99953 * 2 1 3 5 5 C 1.38129 * 120.03870 * 305.00938 * 4 2 1 6 6 C 1.38261 * 120.07086 * 179.72381 * 5 4 2 7 7 C 1.38304 * 120.14500 * 0.28131 * 6 5 4 8 8 C 1.38090 * 120.06528 * 359.97438 * 7 6 5 9 9 C 1.38857 * 120.03585 * 125.26503 * 4 2 1 10 10 N 1.39935 * 120.07014 * 359.97438 * 9 4 2 11 11 C 1.34776 * 119.99662 * 205.14708 * 10 9 4 12 12 O 1.21286 * 120.00399 * 5.49772 * 11 10 9 13 13 C 1.50697 * 119.99513 * 185.49928 * 11 10 9 14 14 H 1.09005 * 109.47642 * 40.00121 * 13 11 10 15 15 C 1.53003 * 109.47579 * 279.99924 * 13 11 10 16 16 S 1.81394 * 109.47088 * 159.99931 * 13 11 10 17 17 O 1.42100 * 108.58096 * 294.48793 * 16 13 11 18 18 O 1.42093 * 108.57933 * 65.51329 * 16 13 11 19 19 C 1.81399 * 101.92362 * 180.02562 * 16 13 11 20 20 C 1.50702 * 109.47396 * 179.97438 * 19 16 13 21 21 H 1.08006 * 119.99876 * 0.02562 * 20 19 16 22 22 C 1.37872 * 120.00491 * 179.97438 * 20 19 16 23 23 N 1.31524 * 119.99789 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00522 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46999 * 89.99831 * 24 22 20 26 26 H 1.48492 * 109.47252 * 209.99955 * 24 22 20 27 27 H 1.48502 * 109.46855 * 330.00336 * 24 22 20 28 28 H 1.08996 * 109.47174 * 299.99674 * 1 2 3 29 29 H 1.08998 * 109.47523 * 60.00433 * 1 2 3 30 30 H 1.09007 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47182 * 239.99902 * 2 1 3 32 32 H 1.08998 * 109.47324 * 300.00114 * 3 2 1 33 33 H 1.09002 * 109.47186 * 59.99905 * 3 2 1 34 34 H 1.08998 * 109.47007 * 180.02562 * 3 2 1 35 35 H 1.07997 * 119.96367 * 0.02562 * 5 4 2 36 36 H 1.08006 * 119.92773 * 180.25195 * 6 5 4 37 37 H 1.07997 * 119.96619 * 179.97438 * 7 6 5 38 38 H 1.08004 * 120.03178 * 180.02562 * 8 7 6 39 39 H 0.97000 * 119.99353 * 25.13877 * 10 9 4 40 40 H 1.09002 * 109.46653 * 59.99643 * 15 13 11 41 41 H 1.08996 * 109.47333 * 180.02562 * 15 13 11 42 42 H 1.08999 * 109.46403 * 300.00555 * 15 13 11 43 43 H 1.09001 * 109.47524 * 299.99892 * 19 16 13 44 44 H 1.09007 * 109.47289 * 60.00125 * 19 16 13 45 45 H 0.96994 * 119.99894 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6159 -0.3025 2.4828 6 6 2.0719 -0.9574 3.6118 7 6 2.9504 -2.0188 3.4919 8 6 3.3745 -2.4281 2.2430 9 6 2.9183 -1.7724 1.1069 10 7 3.3458 -2.1851 -0.1601 11 6 3.7620 -3.4527 -0.3510 12 8 3.6727 -4.2622 0.5478 13 6 4.3382 -3.8641 -1.6812 14 1 4.9740 -3.0659 -2.0644 15 6 3.2009 -4.1292 -2.6698 16 16 5.3223 -5.3736 -1.4730 17 8 6.4444 -5.0733 -0.6545 18 8 4.4528 -6.4326 -1.0968 19 6 5.9057 -5.6769 -3.1636 20 6 6.7591 -6.9188 -3.1854 21 1 6.9328 -7.4707 -2.2734 22 6 7.3174 -7.3511 -4.3696 23 7 7.1055 -6.6792 -5.4803 24 14 8.3746 -8.8909 -4.3968 25 1 7.5175 -10.0753 -4.6566 26 1 9.3940 -8.7725 -5.4700 27 1 9.0528 -9.0488 -3.0851 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4425 -0.0005 35 1 0.9297 0.5258 2.5798 36 1 1.7417 -0.6391 4.5897 37 1 3.3050 -2.5281 4.3757 38 1 4.0602 -3.2574 2.1500 39 1 3.3424 -1.5588 -0.9008 40 1 2.6096 -3.2221 -2.7949 41 1 3.6178 -4.4272 -3.6318 42 1 2.5652 -4.9273 -2.2866 43 1 5.0497 -5.8123 -3.8246 44 1 6.4956 -4.8252 -3.5027 45 1 7.4979 -6.9836 -6.3135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905269017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:43 Heat of formation + Delta-G solvation = -115.784975 kcal Electronic energy + Delta-G solvation = -27611.847806 eV Core-core repulsion = 23720.377327 eV Total energy + Delta-G solvation = -3891.470479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09050 -40.04838 -37.90679 -36.90282 -36.43995 -35.99575 -35.43927 -34.61636 -31.12091 -30.88183 -30.23597 -27.95712 -26.24044 -25.60304 -24.77593 -23.67906 -21.77555 -20.98265 -19.89229 -19.33063 -18.75103 -18.61676 -17.36994 -17.32945 -16.94300 -16.74590 -16.38800 -16.18894 -16.00527 -15.46398 -15.01767 -14.87767 -14.64890 -14.59202 -14.46339 -14.13517 -14.04024 -13.50825 -13.49176 -13.40553 -13.13590 -13.01453 -13.00276 -12.93511 -12.91781 -12.77102 -12.68333 -12.52861 -12.05056 -11.91447 -11.81751 -11.69285 -11.68042 -11.51466 -11.15965 -10.88457 -10.76128 -9.73121 -9.12480 -8.42036 -6.57401 -0.93252 0.17869 0.40079 1.21859 1.38235 1.38743 1.50840 1.61320 2.06131 2.31562 2.80343 2.86424 2.91233 3.11903 3.24903 3.64656 3.68489 3.79971 3.85255 4.13202 4.23947 4.30581 4.31372 4.45877 4.51644 4.53285 4.57029 4.65394 4.72887 4.74384 4.85713 4.95702 5.02396 5.03150 5.06011 5.17763 5.24514 5.30076 5.36269 5.41442 5.43369 5.55537 5.59718 5.73484 6.03586 6.08595 6.49612 6.72520 7.12725 8.70120 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.002766 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.909478 B =10120.265861 C =10862.272351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.101 4.101 5 C -0.095 4.095 6 C -0.130 4.130 7 C -0.115 4.115 8 C -0.161 4.161 9 C 0.125 3.875 10 N -0.641 5.641 11 C 0.539 3.461 12 O -0.549 6.549 13 C -0.603 4.603 14 H 0.200 0.800 15 C -0.140 4.140 16 S 2.417 3.583 17 O -0.990 6.990 18 O -0.975 6.975 19 C -0.409 4.409 20 C -0.567 4.567 21 H 0.054 0.946 22 C 0.033 3.967 23 N -0.901 5.901 24 Si 0.956 3.044 25 H -0.264 1.264 26 H -0.264 1.264 27 H -0.270 1.270 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.430 0.570 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 20.826 7.582 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.103 4.103 5 C -0.113 4.113 6 C -0.149 4.149 7 C -0.134 4.134 8 C -0.182 4.182 9 C 0.031 3.969 10 N -0.287 5.287 11 C 0.325 3.675 12 O -0.427 6.427 13 C -0.714 4.714 14 H 0.217 0.783 15 C -0.198 4.198 16 S 2.604 3.396 17 O -0.987 6.987 18 O -0.972 6.972 19 C -0.543 4.543 20 C -0.606 4.606 21 H 0.072 0.928 22 C -0.171 4.171 23 N -0.538 5.538 24 Si 0.779 3.221 25 H -0.189 1.189 26 H -0.188 1.188 27 H -0.195 1.195 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.151 0.849 38 H 0.130 0.870 39 H 0.271 0.729 40 H 0.138 0.862 41 H 0.123 0.877 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.923 19.808 8.773 25.752 hybrid contribution 0.802 -0.552 -0.921 1.340 sum -13.121 19.256 7.852 24.589 Atomic orbital electron populations 1.21839 0.93043 1.01677 1.03257 1.20147 0.97114 0.96592 0.93792 1.21856 1.00922 0.93833 1.03223 1.19867 0.96463 0.96549 0.97415 1.21148 0.99524 1.00090 0.90539 1.21468 0.97636 0.95537 1.00220 1.21263 0.98081 0.97602 0.96405 1.21436 1.02172 1.01569 0.92991 1.17840 0.97637 0.97341 0.84089 1.43239 1.62979 1.11150 1.11341 1.19791 0.77289 0.82630 0.87742 1.90827 1.55223 1.51907 1.44712 1.30616 1.14495 1.24390 1.01856 0.78275 1.21800 0.95093 1.05866 0.97061 1.08172 0.74837 0.76455 0.80163 1.93411 1.51842 1.85256 1.68238 1.93416 1.67652 1.52964 1.83156 1.27569 1.07252 1.05527 1.13939 1.20699 1.33617 1.10154 0.96112 0.92768 1.25668 0.96669 1.00231 0.94532 1.69968 1.44014 1.40203 0.99615 0.85570 0.78815 0.79028 0.78672 1.18917 1.18809 1.19463 0.91319 0.90776 0.93868 0.90628 0.90760 0.91555 0.93079 0.82703 0.83063 0.84851 0.87022 0.72872 0.86228 0.87738 0.91526 0.88109 0.88552 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.95 71.98 0.64 -0.85 16 2 C -0.06 -0.72 2.98 -11.54 -0.03 -0.75 16 3 C -0.14 -1.31 9.05 71.98 0.65 -0.66 16 4 C -0.10 -1.85 4.80 -19.74 -0.09 -1.95 16 5 C -0.09 -1.48 8.75 22.25 0.19 -1.29 16 6 C -0.13 -2.25 10.04 22.29 0.22 -2.03 16 7 C -0.11 -2.70 10.04 22.25 0.22 -2.48 16 8 C -0.16 -4.87 8.72 22.39 0.20 -4.67 16 9 C 0.12 3.20 6.41 38.15 0.24 3.44 16 10 N -0.64 -15.39 5.05 -303.50 -1.53 -16.93 16 11 C 0.54 17.61 6.81 87.66 0.60 18.21 16 12 O -0.55 -23.42 12.81 5.48 0.07 -23.35 16 13 C -0.60 -17.69 3.11 29.85 0.09 -17.60 16 14 H 0.20 3.91 8.14 -2.39 -0.02 3.89 16 15 C -0.14 -3.26 8.93 71.98 0.64 -2.62 16 16 S 2.42 108.10 3.59 -56.49 -0.20 107.90 16 17 O -0.99 -51.04 18.10 -127.37 -2.30 -53.34 16 18 O -0.97 -50.74 17.40 -122.75 -2.14 -52.87 16 19 C -0.41 -19.21 5.11 71.24 0.36 -18.84 16 20 C -0.57 -32.04 9.13 25.60 0.23 -31.80 16 21 H 0.05 3.16 7.71 -2.91 -0.02 3.14 16 22 C 0.03 1.79 5.46 84.65 0.46 2.25 16 23 N -0.90 -49.21 13.29 21.45 0.28 -48.93 16 24 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 26 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 28 H 0.07 0.59 7.13 -2.39 -0.02 0.58 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.08 0.86 5.98 -2.39 -0.01 0.85 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.54 7.70 -2.39 -0.02 0.52 16 34 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.16 1.45 7.10 -2.91 -0.02 1.43 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.11 4.16 5.79 -2.91 -0.02 4.14 16 39 H 0.43 6.61 6.91 -92.71 -0.64 5.97 16 40 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 2.25 6.55 -2.39 -0.02 2.23 16 42 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 43 H 0.10 4.43 6.87 -2.39 -0.02 4.41 16 44 H 0.10 4.25 8.14 -2.39 -0.02 4.23 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -83.42 380.61 1.21 -82.21 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.37 Total: 22.01 kcal Atomic # 6 Polarization: -66.27 SS G_CDS: 4.64 Total: -61.63 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -1.25 Total: -65.85 kcal Atomic # 8 Polarization: -125.20 SS G_CDS: -4.37 Total: -129.57 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 108.10 SS G_CDS: -0.20 Total: 107.90 kcal Total: -83.42 1.21 -82.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.578 kcal (2) G-P(sol) polarization free energy of solvation -83.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds