Wall clock time and date at job start Tue Mar 31 2020 22:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47261 * 2 1 4 4 O 1.42103 * 108.57700 * 65.51591 * 3 2 1 5 5 O 1.42094 * 108.58050 * 294.48788 * 3 2 1 6 6 C 1.81402 * 101.92325 * 180.02562 * 3 2 1 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 3 2 8 8 O 1.21288 * 119.99515 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00345 * 180.28043 * 7 6 3 10 10 C 1.46500 * 119.99639 * 354.98622 * 9 7 6 11 11 C 1.50700 * 109.46893 * 90.00775 * 10 9 7 12 12 H 1.07993 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00004 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00187 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46866 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47126 * 119.99814 * 15 13 11 18 18 H 1.48499 * 109.47157 * 239.99395 * 15 13 11 19 19 C 1.39922 * 120.00154 * 174.99585 * 9 7 6 20 20 C 1.38876 * 120.06715 * 291.83509 * 19 9 7 21 21 C 1.38118 * 119.92641 * 179.70008 * 20 19 9 22 22 C 1.50698 * 119.96225 * 180.29631 * 21 20 19 23 23 C 1.38274 * 120.07085 * 0.57828 * 21 20 19 24 24 C 1.38284 * 120.14419 * 359.71838 * 23 21 20 25 25 C 1.50693 * 119.96840 * 180.02562 * 24 23 21 26 26 C 1.38118 * 120.06778 * 359.97438 * 24 23 21 27 27 H 1.08996 * 109.47003 * 59.99573 * 1 2 3 28 28 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46842 * 299.99757 * 1 2 3 30 30 H 1.09000 * 109.47059 * 239.99792 * 2 1 3 31 31 H 1.09004 * 109.47213 * 119.99813 * 2 1 3 32 32 H 1.09003 * 109.46770 * 59.99733 * 6 3 2 33 33 H 1.09000 * 109.46964 * 300.00018 * 6 3 2 34 34 H 1.09002 * 109.47009 * 210.00297 * 10 9 7 35 35 H 1.08998 * 109.47656 * 330.00465 * 10 9 7 36 36 H 0.96998 * 120.00220 * 180.02562 * 14 13 11 37 37 H 1.08003 * 120.03448 * 359.97438 * 20 19 9 38 38 H 1.09003 * 109.47683 * 270.27948 * 22 21 20 39 39 H 1.09007 * 109.47324 * 30.28203 * 22 21 20 40 40 H 1.08998 * 109.47214 * 150.28024 * 22 21 20 41 41 H 1.07997 * 119.92877 * 179.69792 * 23 21 20 42 42 H 1.09007 * 109.47106 * 269.98015 * 25 24 23 43 43 H 1.09001 * 109.47006 * 29.97973 * 25 24 23 44 44 H 1.08996 * 109.47339 * 149.98133 * 25 24 23 45 45 H 1.08003 * 120.03434 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3231 1.2259 5 8 1.7593 2.3232 -1.2257 6 6 3.9330 1.4719 -0.0008 7 6 4.6177 2.8143 -0.0002 8 8 3.9575 3.8318 0.0001 9 7 5.9636 2.8844 -0.0064 10 6 6.7612 1.6600 0.0973 11 6 7.0346 1.1202 -1.2830 12 1 6.6522 1.6373 -2.1505 13 6 7.7722 -0.0343 -1.4381 14 7 8.2376 -0.6643 -0.3816 15 14 8.1105 -0.7037 -3.1489 16 1 7.4812 0.1826 -4.1605 17 1 9.5767 -0.7557 -3.3791 18 1 7.5423 -2.0706 -3.2669 19 6 6.5991 4.1265 -0.1116 20 6 6.5166 4.8525 -1.2927 21 6 7.1398 6.0811 -1.3912 22 6 7.0452 6.8726 -2.6702 23 6 7.8552 6.5831 -0.3197 24 6 7.9444 5.8599 0.8556 25 6 8.7246 6.4110 2.0211 26 6 7.3182 4.6335 0.9628 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.2252 0.9149 -0.8910 33 1 4.2260 0.9146 0.8890 34 1 7.7056 1.8825 0.5940 35 1 6.2127 0.9168 0.6759 36 1 8.7568 -1.4763 -0.4907 37 1 5.9621 4.4587 -2.1316 38 1 7.8707 6.6003 -3.3279 39 1 6.0990 6.6526 -3.1645 40 1 7.0976 7.9374 -2.4432 41 1 8.3457 7.5418 -0.4009 42 1 9.7612 6.0807 1.9532 43 1 8.6882 7.5002 2.0003 44 1 8.2889 6.0507 2.9530 45 1 7.3885 4.0690 1.8808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917998076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:40 Heat of formation + Delta-G solvation = -88.745283 kcal Electronic energy + Delta-G solvation = -27938.366888 eV Core-core repulsion = 24048.068938 eV Total energy + Delta-G solvation = -3890.297950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.11408 -38.45302 -36.71146 -35.77981 -35.41001 -33.24992 -33.18706 -32.91861 -31.27618 -29.32729 -27.44532 -26.87819 -26.39546 -24.17600 -23.18161 -22.25536 -20.39804 -18.95889 -18.48047 -17.17196 -16.91480 -16.34410 -16.13046 -16.02520 -15.78945 -15.40795 -15.17986 -14.64985 -14.46890 -14.10011 -13.74987 -13.46552 -13.24796 -13.02536 -12.90670 -12.69408 -12.59320 -12.55371 -12.35062 -12.26418 -11.81495 -11.79940 -11.76477 -11.71516 -11.61858 -11.34353 -11.25297 -11.07603 -10.95874 -10.79090 -10.71938 -10.35156 -10.30245 -9.95917 -9.68678 -8.74052 -8.61102 -8.18754 -7.79218 -6.34902 -4.43139 0.07541 1.68960 1.75443 2.92351 2.93695 3.10901 3.20932 3.25233 3.41360 3.95619 4.07292 4.17190 4.21063 4.59443 4.71778 4.83554 4.98802 5.03094 5.11420 5.13253 5.21676 5.42655 5.46996 5.51498 5.55002 5.58316 5.68543 5.72585 5.74625 5.80741 5.82164 5.88465 6.00883 6.04606 6.18763 6.46211 6.58030 6.79721 6.86040 6.92072 7.01580 7.15901 7.46784 7.60059 7.84256 7.93223 8.50403 8.68542 9.25203 10.72029 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007734 B = 0.005014 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.346140 B = 5582.823742 C = 7773.979729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.624 4.624 3 S 2.447 3.553 4 O -0.929 6.929 5 O -0.926 6.926 6 C -0.642 4.642 7 C 0.549 3.451 8 O -0.548 6.548 9 N -0.548 5.548 10 C 0.235 3.765 11 C -0.542 4.542 12 H 0.065 0.935 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.177 3.823 20 C -0.109 4.109 21 C -0.078 4.078 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.079 4.079 25 C -0.109 4.109 26 C -0.126 4.126 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.267 0.733 37 H 0.121 0.879 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 4.073 1.736 6.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.753 4.753 3 S 2.625 3.375 4 O -0.926 6.926 5 O -0.923 6.923 6 C -0.770 4.770 7 C 0.336 3.664 8 O -0.427 6.427 9 N -0.274 5.274 10 C 0.117 3.883 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.723 3.277 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.207 1.207 19 C 0.086 3.914 20 C -0.129 4.129 21 C -0.079 4.079 22 C -0.167 4.167 23 C -0.149 4.149 24 C -0.080 4.080 25 C -0.165 4.165 26 C -0.145 4.145 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.189 0.811 33 H 0.176 0.824 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.720 5.163 1.806 7.914 hybrid contribution 1.100 -1.754 -0.929 2.269 sum -4.620 3.409 0.877 5.808 Atomic orbital electron populations 1.21494 0.90505 1.04617 1.03696 1.30342 1.07331 1.25701 1.11896 1.07466 0.77035 0.77282 0.75689 1.93547 1.80527 1.72647 1.45859 1.93551 1.80450 1.72569 1.45751 1.30733 1.25676 1.06010 1.14625 1.19044 0.82855 0.88106 0.76385 1.90800 1.64292 1.36127 1.51499 1.45730 1.04965 1.07298 1.69409 1.19675 0.91183 0.79157 0.98271 1.21482 1.34917 1.09320 0.92368 0.91696 1.24933 0.94984 0.96362 0.97364 1.69921 1.35391 1.18413 1.28941 0.86457 0.78457 0.78862 0.83925 1.19433 1.20632 1.20668 1.17467 0.94962 0.85940 0.93049 1.21096 1.00247 0.94629 0.96879 1.19680 0.97531 0.94668 0.95972 1.20748 1.02432 0.98914 0.94574 1.20769 1.01112 1.00123 0.92917 1.19636 0.98352 0.94334 0.95666 1.20734 0.99437 1.00586 0.95787 1.21026 0.99703 0.95684 0.98108 0.90851 0.90187 0.90886 0.84687 0.84835 0.81129 0.82351 0.93816 0.93807 0.92354 0.86102 0.91310 0.91579 0.91791 0.86421 0.91301 0.91805 0.91699 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.92 37.16 0.37 -1.02 16 2 C -0.62 -6.33 6.53 37.16 0.24 -6.09 16 3 S 2.45 37.93 3.96 -107.50 -0.43 37.50 16 4 O -0.93 -17.17 17.95 -59.53 -1.07 -18.24 16 5 O -0.93 -17.49 17.94 -59.53 -1.07 -18.56 16 6 C -0.64 -10.52 4.95 36.00 0.18 -10.34 16 7 C 0.55 11.61 7.55 -10.99 -0.08 11.53 16 8 O -0.55 -12.91 15.39 2.54 0.04 -12.87 16 9 N -0.55 -11.80 2.50 -114.74 -0.29 -12.08 16 10 C 0.24 5.38 4.88 -5.19 -0.03 5.36 16 11 C -0.54 -13.46 9.14 -34.44 -0.31 -13.78 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -23.22 13.29 55.43 0.74 -22.49 16 15 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.18 3.67 4.74 -83.69 -0.40 3.28 16 20 C -0.11 -2.15 9.22 -39.39 -0.36 -2.51 16 21 C -0.08 -1.29 5.88 -104.65 -0.62 -1.90 16 22 C -0.11 -1.42 10.01 36.00 0.36 -1.06 16 23 C -0.13 -1.99 9.35 -39.55 -0.37 -2.36 16 24 C -0.08 -1.25 5.88 -104.65 -0.62 -1.87 16 25 C -0.11 -1.30 10.01 36.00 0.36 -0.94 16 26 C -0.13 -2.32 9.34 -39.39 -0.37 -2.69 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.13 1.12 8.14 -51.92 -0.42 0.69 16 31 H 0.13 1.05 8.14 -51.92 -0.42 0.62 16 32 H 0.17 2.59 7.89 -51.92 -0.41 2.18 16 33 H 0.16 2.13 7.27 -51.92 -0.38 1.75 16 34 H 0.04 1.06 7.86 -51.93 -0.41 0.66 16 35 H 0.04 0.97 6.48 -51.93 -0.34 0.63 16 36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 37 H 0.12 2.43 8.06 -52.48 -0.42 2.00 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 44 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 45 H 0.12 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -34.60 393.86 -9.88 -44.48 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.98 Total: 4.48 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -1.74 Total: -22.81 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.45 Total: -34.57 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -2.10 Total: -49.67 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 37.93 SS G_CDS: -0.43 Total: 37.50 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.60 -9.88 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917998076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.261 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds