Wall clock time and date at job start Tue Mar 31 2020 22:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47261 * 2 1 4 4 O 1.42103 * 108.57700 * 65.51591 * 3 2 1 5 5 O 1.42094 * 108.58050 * 294.48788 * 3 2 1 6 6 C 1.81402 * 101.92325 * 180.02562 * 3 2 1 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 3 2 8 8 O 1.21288 * 119.99515 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00345 * 180.28043 * 7 6 3 10 10 C 1.46500 * 119.99639 * 354.98622 * 9 7 6 11 11 C 1.50700 * 109.46893 * 90.00775 * 10 9 7 12 12 H 1.07993 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00004 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00187 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46866 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47126 * 119.99814 * 15 13 11 18 18 H 1.48499 * 109.47157 * 239.99395 * 15 13 11 19 19 C 1.39922 * 120.00154 * 174.99585 * 9 7 6 20 20 C 1.38876 * 120.06715 * 291.83509 * 19 9 7 21 21 C 1.38118 * 119.92641 * 179.70008 * 20 19 9 22 22 C 1.50698 * 119.96225 * 180.29631 * 21 20 19 23 23 C 1.38274 * 120.07085 * 0.57828 * 21 20 19 24 24 C 1.38284 * 120.14419 * 359.71838 * 23 21 20 25 25 C 1.50693 * 119.96840 * 180.02562 * 24 23 21 26 26 C 1.38118 * 120.06778 * 359.97438 * 24 23 21 27 27 H 1.08996 * 109.47003 * 59.99573 * 1 2 3 28 28 H 1.08998 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46842 * 299.99757 * 1 2 3 30 30 H 1.09000 * 109.47059 * 239.99792 * 2 1 3 31 31 H 1.09004 * 109.47213 * 119.99813 * 2 1 3 32 32 H 1.09003 * 109.46770 * 59.99733 * 6 3 2 33 33 H 1.09000 * 109.46964 * 300.00018 * 6 3 2 34 34 H 1.09002 * 109.47009 * 210.00297 * 10 9 7 35 35 H 1.08998 * 109.47656 * 330.00465 * 10 9 7 36 36 H 0.96998 * 120.00220 * 180.02562 * 14 13 11 37 37 H 1.08003 * 120.03448 * 359.97438 * 20 19 9 38 38 H 1.09003 * 109.47683 * 270.27948 * 22 21 20 39 39 H 1.09007 * 109.47324 * 30.28203 * 22 21 20 40 40 H 1.08998 * 109.47214 * 150.28024 * 22 21 20 41 41 H 1.07997 * 119.92877 * 179.69792 * 23 21 20 42 42 H 1.09007 * 109.47106 * 269.98015 * 25 24 23 43 43 H 1.09001 * 109.47006 * 29.97973 * 25 24 23 44 44 H 1.08996 * 109.47339 * 149.98133 * 25 24 23 45 45 H 1.08003 * 120.03434 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3231 1.2259 5 8 1.7593 2.3232 -1.2257 6 6 3.9330 1.4719 -0.0008 7 6 4.6177 2.8143 -0.0002 8 8 3.9575 3.8318 0.0001 9 7 5.9636 2.8844 -0.0064 10 6 6.7612 1.6600 0.0973 11 6 7.0346 1.1202 -1.2830 12 1 6.6522 1.6373 -2.1505 13 6 7.7722 -0.0343 -1.4381 14 7 8.2376 -0.6643 -0.3816 15 14 8.1105 -0.7037 -3.1489 16 1 7.4812 0.1826 -4.1605 17 1 9.5767 -0.7557 -3.3791 18 1 7.5423 -2.0706 -3.2669 19 6 6.5991 4.1265 -0.1116 20 6 6.5166 4.8525 -1.2927 21 6 7.1398 6.0811 -1.3912 22 6 7.0452 6.8726 -2.6702 23 6 7.8552 6.5831 -0.3197 24 6 7.9444 5.8599 0.8556 25 6 8.7246 6.4110 2.0211 26 6 7.3182 4.6335 0.9628 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.2252 0.9149 -0.8910 33 1 4.2260 0.9146 0.8890 34 1 7.7056 1.8825 0.5940 35 1 6.2127 0.9168 0.6759 36 1 8.7568 -1.4763 -0.4907 37 1 5.9621 4.4587 -2.1316 38 1 7.8707 6.6003 -3.3279 39 1 6.0990 6.6526 -3.1645 40 1 7.0976 7.9374 -2.4432 41 1 8.3457 7.5418 -0.4009 42 1 9.7612 6.0807 1.9532 43 1 8.6882 7.5002 2.0003 44 1 8.2889 6.0507 2.9530 45 1 7.3885 4.0690 1.8808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917998076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:39 Heat of formation + Delta-G solvation = -111.193252 kcal Electronic energy + Delta-G solvation = -27939.340305 eV Core-core repulsion = 24048.068938 eV Total energy + Delta-G solvation = -3891.271367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65835 -39.88580 -38.03691 -37.20542 -36.98006 -34.78231 -34.45190 -34.01841 -32.71836 -30.71681 -29.17978 -28.06710 -27.66267 -25.14781 -24.98370 -23.63591 -21.66976 -20.40369 -19.79802 -18.76802 -18.57404 -17.91483 -17.43373 -17.37719 -17.12999 -16.82159 -16.63106 -16.20731 -15.85796 -15.19213 -14.94386 -14.77780 -14.46100 -14.40021 -14.02555 -14.01582 -13.94263 -13.72519 -13.59277 -13.38846 -13.34393 -13.14179 -13.12776 -13.06541 -12.85914 -12.73858 -12.52987 -12.46848 -12.36431 -12.14979 -12.10410 -11.97891 -11.76992 -11.41433 -11.29149 -10.67205 -10.17685 -9.52495 -9.32314 -8.28096 -6.42948 -1.10465 0.29919 0.39034 1.31110 1.36624 1.42212 1.51951 1.75921 1.92284 2.35435 2.68148 2.76399 3.00672 3.05591 3.38491 3.74993 3.82595 3.88076 3.88274 4.03732 4.13263 4.25675 4.38482 4.40753 4.42864 4.43385 4.66379 4.75054 4.75557 4.79821 4.85255 4.86272 4.87944 4.97478 5.04197 5.10962 5.13237 5.31838 5.40940 5.49019 5.60145 5.64365 5.69291 5.94063 6.06467 6.26110 6.64963 6.94387 7.28905 8.78225 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007734 B = 0.005014 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.346140 B = 5582.823742 C = 7773.979729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.584 4.584 3 S 2.435 3.565 4 O -0.970 6.970 5 O -0.974 6.974 6 C -0.646 4.646 7 C 0.533 3.467 8 O -0.582 6.582 9 N -0.550 5.550 10 C 0.249 3.751 11 C -0.550 4.550 12 H 0.051 0.949 13 C 0.030 3.970 14 N -0.913 5.913 15 Si 0.953 3.047 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.267 1.267 19 C 0.137 3.863 20 C -0.142 4.142 21 C -0.079 4.079 22 C -0.108 4.108 23 C -0.128 4.128 24 C -0.075 4.075 25 C -0.106 4.106 26 C -0.149 4.149 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.022 0.978 35 H 0.051 0.949 36 H 0.271 0.729 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.159 0.841 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 3.451 1.575 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.718 4.718 3 S 2.619 3.381 4 O -0.968 6.968 5 O -0.971 6.971 6 C -0.772 4.772 7 C 0.322 3.678 8 O -0.464 6.464 9 N -0.275 5.275 10 C 0.130 3.870 11 C -0.589 4.589 12 H 0.069 0.931 13 C -0.171 4.171 14 N -0.552 5.552 15 Si 0.778 3.222 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.192 1.192 19 C 0.047 3.953 20 C -0.162 4.162 21 C -0.080 4.080 22 C -0.164 4.164 23 C -0.146 4.146 24 C -0.076 4.076 25 C -0.162 4.162 26 C -0.169 4.169 27 H 0.088 0.912 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.183 0.817 31 H 0.187 0.813 32 H 0.198 0.802 33 H 0.203 0.797 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.177 0.823 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.123 4.598 1.648 7.078 hybrid contribution 0.926 -1.553 -0.852 1.999 sum -4.197 3.044 0.796 5.245 Atomic orbital electron populations 1.21740 0.89635 1.06741 1.03741 1.30065 1.07717 1.18813 1.15208 1.07655 0.76207 0.80256 0.74022 1.93485 1.80568 1.75891 1.46806 1.93483 1.80618 1.75954 1.47021 1.30838 1.26554 1.03579 1.16269 1.19829 0.82736 0.89630 0.75583 1.90757 1.64774 1.37896 1.53016 1.45752 1.05207 1.07378 1.69210 1.19397 0.90509 0.79798 0.97322 1.21569 1.35162 1.09492 0.92658 0.93104 1.25559 0.94631 0.96459 1.00464 1.69990 1.35846 1.18844 1.30503 0.85581 0.78058 0.78649 0.79919 1.19877 1.20664 1.19187 1.17918 0.96588 0.86335 0.94452 1.21154 1.02132 0.96607 0.96276 1.20143 0.96283 0.93555 0.97993 1.20818 1.02636 1.00014 0.92944 1.21255 1.00100 1.01349 0.91849 1.20158 0.97106 0.93010 0.97314 1.20817 0.99308 1.02071 0.94050 1.21210 1.00716 0.97294 0.97633 0.91172 0.86694 0.90922 0.81744 0.81318 0.80158 0.79657 0.95948 0.93122 0.91982 0.88236 0.89995 0.92220 0.88885 0.82296 0.89984 0.89175 0.91380 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.92 71.98 0.71 -1.89 16 2 C -0.58 -10.04 6.53 71.98 0.47 -9.57 16 3 S 2.44 76.80 3.96 -56.49 -0.22 76.57 16 4 O -0.97 -37.25 17.95 -125.75 -2.26 -39.50 16 5 O -0.97 -38.57 17.94 -125.75 -2.26 -40.83 16 6 C -0.65 -21.67 4.95 71.24 0.35 -21.32 16 7 C 0.53 23.92 7.55 87.66 0.66 24.58 16 8 O -0.58 -29.49 15.39 -0.18 0.00 -29.49 16 9 N -0.55 -25.12 2.50 -635.31 -1.59 -26.71 16 10 C 0.25 11.83 4.88 85.63 0.42 12.25 16 11 C -0.55 -28.02 9.14 25.60 0.23 -27.78 16 12 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 13 C 0.03 1.52 5.46 84.65 0.46 1.99 16 14 N -0.91 -47.62 13.29 21.45 0.28 -47.33 16 15 Si 0.95 40.09 29.54 68.60 2.03 42.12 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 19 C 0.14 6.07 4.74 38.15 0.18 6.25 16 20 C -0.14 -5.95 9.22 22.39 0.21 -5.74 16 21 C -0.08 -2.61 5.88 -19.88 -0.12 -2.73 16 22 C -0.11 -2.66 10.01 71.24 0.71 -1.94 16 23 C -0.13 -3.66 9.35 22.29 0.21 -3.46 16 24 C -0.08 -2.32 5.88 -19.88 -0.12 -2.43 16 25 C -0.11 -2.28 10.01 71.23 0.71 -1.57 16 26 C -0.15 -5.74 9.34 22.39 0.21 -5.53 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.17 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.18 5.58 7.89 -2.39 -0.02 5.56 16 33 H 0.19 4.96 7.27 -2.39 -0.02 4.94 16 34 H 0.02 1.15 7.86 -2.39 -0.02 1.13 16 35 H 0.05 2.30 6.48 -2.39 -0.02 2.28 16 36 H 0.27 13.30 8.31 -92.71 -0.77 12.52 16 37 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.54 8.09 -2.38 -0.02 1.52 16 40 H 0.09 1.75 8.08 -2.39 -0.02 1.73 16 41 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 44 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 45 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -80.22 393.86 2.26 -77.95 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.97 Total: 26.12 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 5.31 Total: -38.89 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.31 Total: -74.05 kcal Atomic # 8 Polarization: -105.31 SS G_CDS: -4.52 Total: -109.83 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 76.80 SS G_CDS: -0.22 Total: 76.57 kcal Total: -80.22 2.26 -77.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917998076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.241 kcal (2) G-P(sol) polarization free energy of solvation -80.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds