Wall clock time and date at job start Tue Mar 31 2020 22:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46978 * 2 1 4 4 C 1.46500 * 119.99600 * 269.99585 * 3 2 1 5 5 C 1.50698 * 109.47157 * 270.00076 * 4 3 2 6 6 H 1.08002 * 120.00359 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00021 * 180.02562 * 5 4 3 8 8 N 1.31523 * 120.00104 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47061 * 89.99945 * 9 7 5 11 11 H 1.48505 * 109.47217 * 209.99424 * 9 7 5 12 12 H 1.48501 * 109.47096 * 329.99716 * 9 7 5 13 13 C 1.34777 * 119.99837 * 90.00082 * 3 2 1 14 14 O 1.21285 * 119.99639 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00507 * 359.97438 * 13 3 2 16 16 C 1.52999 * 109.47166 * 180.02562 * 15 13 3 17 17 C 1.50706 * 109.46930 * 180.02562 * 16 15 13 18 18 C 1.38228 * 120.00056 * 89.99729 * 17 16 15 19 19 C 1.38241 * 119.99915 * 179.97438 * 18 17 16 20 20 C 1.38228 * 119.99681 * 0.02562 * 19 18 17 21 21 S 1.76203 * 119.99649 * 179.97438 * 20 19 18 22 22 C 1.81404 * 104.44838 * 90.00553 * 21 20 19 23 23 O 1.42100 * 104.28012 * 333.93528 * 21 20 19 24 24 O 1.42100 * 104.27885 * 206.07639 * 21 20 19 25 25 C 1.38234 * 120.00757 * 0.25984 * 20 19 18 26 26 C 1.38234 * 119.99689 * 270.02337 * 17 16 15 27 27 H 1.09001 * 109.47355 * 300.00101 * 1 2 3 28 28 H 1.09001 * 109.47088 * 60.00187 * 1 2 3 29 29 H 1.09001 * 109.46933 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47567 * 239.99481 * 2 1 3 31 31 H 1.09000 * 109.47010 * 119.99272 * 2 1 3 32 32 H 1.08994 * 109.47138 * 30.00535 * 4 3 2 33 33 H 1.08999 * 109.46556 * 150.00354 * 4 3 2 34 34 H 0.96998 * 119.99821 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.46849 * 59.99938 * 15 13 3 36 36 H 1.09001 * 109.47260 * 300.00656 * 15 13 3 37 37 H 1.08994 * 109.47085 * 60.00526 * 16 15 13 38 38 H 1.09001 * 109.46825 * 299.99974 * 16 15 13 39 39 H 1.08004 * 120.00119 * 0.02562 * 18 17 16 40 40 H 1.07998 * 119.99727 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.47124 * 299.99881 * 22 21 20 42 42 H 1.09001 * 109.46975 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.47147 * 59.99966 * 22 21 20 44 44 H 1.08001 * 120.00506 * 179.72371 * 25 20 19 45 45 H 1.08001 * 120.00591 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3903 -2.8774 8 7 3.3494 3.1264 -3.6177 9 14 5.9139 2.0973 -3.4162 10 1 5.9778 0.8766 -4.2594 11 1 6.3929 3.2650 -4.1989 12 1 6.7737 1.9176 -2.2189 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3064 2.4723 16 6 2.3222 2.2441 3.6352 17 6 2.0711 1.5336 4.9404 18 6 3.0847 0.8091 5.5391 19 6 2.8545 0.1579 6.7366 20 6 1.6106 0.2308 7.3349 21 16 1.3170 -0.5998 8.8609 22 6 1.7480 0.6214 10.1312 23 8 2.2505 -1.6711 8.8621 24 8 -0.0823 -0.8474 8.8616 25 6 0.5952 0.9504 6.7333 26 6 0.8270 1.6061 5.5385 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6755 3.5167 -4.4436 35 1 2.6211 0.4188 2.5302 36 1 0.9432 1.0126 2.5299 37 1 1.6920 3.1314 3.5771 38 1 3.3702 2.5382 3.5778 39 1 4.0568 0.7525 5.0717 40 1 3.6466 -0.4078 7.2045 41 1 2.7934 0.9089 10.0189 42 1 1.5950 0.1873 11.1192 43 1 1.1149 1.5016 10.0186 44 1 -0.3780 1.0037 7.1985 45 1 0.0350 2.1721 5.0707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:46 Heat of formation + Delta-G solvation = -89.124330 kcal Electronic energy + Delta-G solvation = -26500.861690 eV Core-core repulsion = 22610.547303 eV Total energy + Delta-G solvation = -3890.314387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.85062 -38.96989 -37.44663 -36.28831 -35.40080 -34.20983 -32.79367 -31.32746 -30.38246 -30.06505 -29.80609 -27.25267 -25.01830 -23.15826 -23.03961 -22.57480 -21.25369 -19.39034 -18.29703 -18.13804 -16.71505 -16.56458 -16.47021 -16.35708 -15.60531 -15.41582 -15.33018 -14.73846 -14.66939 -14.33698 -13.83465 -13.78136 -13.66591 -13.54673 -13.37998 -13.21745 -12.86850 -12.43050 -12.32578 -12.27963 -12.18732 -12.02777 -11.90698 -11.61828 -11.50609 -11.45856 -11.20705 -10.98910 -10.93814 -10.84863 -10.67584 -10.52389 -10.14804 -9.65473 -9.42497 -9.31394 -8.89108 -8.45357 -7.68796 -6.06181 -4.10923 -0.32013 0.54070 1.03638 2.50497 3.11655 3.28319 3.34459 3.36874 3.42211 3.58883 3.73524 3.90736 4.30895 4.36770 4.42064 4.56084 4.56969 4.61776 5.04825 5.05226 5.09743 5.16036 5.22466 5.23743 5.28923 5.31766 5.44280 5.57175 5.64817 5.67048 5.77560 5.79031 5.89471 5.93066 6.05293 6.15687 6.22090 6.34570 6.47323 6.58240 7.04991 7.42553 7.52897 7.90251 8.21794 8.40491 8.88003 9.06726 9.54236 11.01887 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.002083 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.741593 B =13441.155202 C =13821.720676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.505 3.495 14 O -0.544 6.544 15 C -0.135 4.135 16 C -0.076 4.076 17 C -0.016 4.016 18 C -0.138 4.138 19 C -0.022 4.022 20 C -0.670 4.670 21 S 2.502 3.498 22 C -0.651 4.651 23 O -0.940 6.940 24 O -0.940 6.940 25 C -0.023 4.023 26 C -0.138 4.138 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.140 0.860 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 -6.235 25.620 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.422 6.422 15 C -0.175 4.175 16 C -0.114 4.114 17 C -0.017 4.017 18 C -0.156 4.156 19 C -0.041 4.041 20 C -0.757 4.757 21 S 2.682 3.318 22 C -0.800 4.800 23 O -0.937 6.937 24 O -0.937 6.937 25 C -0.042 4.042 26 C -0.157 4.157 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.875 -6.353 25.518 26.945 hybrid contribution 1.240 0.600 -0.746 1.567 sum -4.635 -5.754 24.772 25.850 Atomic orbital electron populations 1.22217 0.96794 1.01447 1.02273 1.21419 0.93514 0.84208 1.02690 1.48270 1.63535 1.13248 1.07804 1.19266 0.96256 0.93623 0.78199 1.21424 0.96911 1.31841 1.06249 0.92526 1.24945 0.97884 0.94928 0.96428 1.69935 1.35703 1.33438 1.14313 0.86497 0.84650 0.77681 0.78580 1.20639 1.21086 1.19921 1.20255 0.78553 0.86933 0.85144 1.90671 1.46039 1.18180 1.87300 1.21690 1.03391 0.99541 0.92864 1.20532 1.04443 0.97681 0.88731 1.20433 0.93161 0.92916 0.95145 1.21285 0.99939 0.98402 0.96013 1.20923 0.94667 0.93938 0.94577 1.30390 1.02028 1.19449 1.23867 1.05046 0.74800 0.76056 0.75896 1.30233 1.12998 1.18801 1.18008 1.93587 1.64421 1.49351 1.86320 1.93584 1.30183 1.83614 1.86332 1.20917 0.97358 0.91301 0.94576 1.21261 0.97194 1.01144 0.96100 0.93092 0.92049 0.92159 0.89982 0.91707 0.95063 0.93928 0.92721 0.89293 0.89381 0.89572 0.89457 0.84769 0.84200 0.84970 0.85116 0.84974 0.84210 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.31 2.46 -175.06 -0.43 -12.74 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.50 10.01 7.67 -10.99 -0.08 9.93 16 14 O -0.54 -13.15 15.56 5.55 0.09 -13.07 16 15 C -0.13 -1.85 4.23 -27.89 -0.12 -1.97 16 16 C -0.08 -0.95 4.63 -27.88 -0.13 -1.08 16 17 C -0.02 -0.17 5.13 -104.62 -0.54 -0.71 16 18 C -0.14 -1.34 9.70 -39.58 -0.38 -1.73 16 19 C -0.02 -0.20 9.47 -39.58 -0.37 -0.57 16 20 C -0.67 -5.71 5.66 -39.59 -0.22 -5.93 16 21 S 2.50 17.91 5.80 -107.50 -0.62 17.29 16 22 C -0.65 -1.96 10.80 101.05 1.09 -0.87 16 23 O -0.94 -9.80 17.13 -57.54 -0.99 -10.79 16 24 O -0.94 -9.70 17.12 -57.54 -0.98 -10.69 16 25 C -0.02 -0.20 9.47 -39.58 -0.37 -0.57 16 26 C -0.14 -1.31 9.70 -39.58 -0.38 -1.69 16 27 H 0.05 0.63 7.22 -51.93 -0.37 0.26 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 36 H 0.09 1.05 7.18 -51.93 -0.37 0.68 16 37 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 38 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 39 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.14 1.00 7.57 -52.49 -0.40 0.60 16 41 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 42 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 43 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 44 H 0.14 0.96 7.56 -52.49 -0.40 0.56 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -38.15 390.84 -9.77 -47.92 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.82 Total: -2.22 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.61 Total: -12.58 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.31 Total: -38.51 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.88 Total: -34.54 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 17.91 SS G_CDS: -0.62 Total: 17.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.15 -9.77 -47.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.207 kcal (2) G-P(sol) polarization free energy of solvation -38.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds