Wall clock time and date at job start Tue Mar 31 2020 22:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47543 * 2 1 4 4 C 1.50702 * 109.46989 * 239.99331 * 2 1 3 5 5 H 1.07997 * 120.00285 * 239.99812 * 4 2 1 6 6 C 1.37876 * 119.99489 * 60.00739 * 4 2 1 7 7 N 1.31517 * 120.00091 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99822 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46890 * 59.99874 * 8 6 4 10 10 H 1.48503 * 109.46880 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46943 * 299.99886 * 8 6 4 12 12 N 1.46505 * 109.46812 * 119.99914 * 2 1 3 13 13 C 1.46504 * 120.00149 * 60.00086 * 12 2 1 14 14 C 1.34777 * 120.00115 * 239.99682 * 12 2 1 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00099 * 269.72808 * 18 17 16 20 20 C 1.38239 * 119.99655 * 179.76882 * 19 18 17 21 21 C 1.38230 * 120.00228 * 0.50243 * 20 19 18 22 22 S 1.76195 * 120.00203 * 179.72624 * 21 20 19 23 23 C 1.81402 * 104.45166 * 270.02502 * 22 21 20 24 24 O 1.42103 * 104.27448 * 26.09424 * 22 21 20 25 25 O 1.42097 * 104.27963 * 153.95183 * 22 21 20 26 26 C 1.38238 * 119.99995 * 359.75228 * 21 20 19 27 27 C 1.38238 * 120.00072 * 359.97438 * 26 21 20 28 28 H 1.09004 * 109.47151 * 300.00253 * 1 2 3 29 29 H 1.08996 * 109.46816 * 59.99766 * 1 2 3 30 30 H 1.08994 * 109.47543 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99944 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.46784 * 269.99859 * 13 12 2 33 33 H 1.09003 * 109.47146 * 29.99481 * 13 12 2 34 34 H 1.08994 * 109.47096 * 150.00065 * 13 12 2 35 35 H 1.09002 * 109.47120 * 59.99760 * 16 14 12 36 36 H 1.08998 * 109.46862 * 300.00562 * 16 14 12 37 37 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 38 38 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 39 39 H 1.08003 * 119.99927 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.99431 * 180.23215 * 20 19 18 41 41 H 1.09001 * 109.46872 * 59.99355 * 23 22 21 42 42 H 1.08994 * 109.47241 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.46604 * 299.99760 * 23 22 21 44 44 H 1.08002 * 119.99952 * 179.97438 * 26 21 20 45 45 H 1.07991 * 120.00062 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3224 -1.1198 -4.0079 9 1 1.8278 -2.5200 -4.0080 10 1 1.8269 -0.4201 -5.2204 11 1 3.8074 -1.1193 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0858 1.1256 1.8916 16 6 3.2959 -0.7462 3.3136 17 6 4.1453 0.2156 4.1468 18 6 4.6475 -0.4948 5.3773 19 6 3.9028 -0.4707 6.5417 20 6 4.3613 -1.1264 7.6690 21 6 5.5693 -1.7973 7.6350 22 16 6.1571 -2.6270 9.0740 23 6 7.1351 -1.3755 9.9504 24 8 4.9787 -2.9400 9.8039 25 8 6.9994 -3.6532 8.5674 26 6 6.3166 -1.8170 6.4722 27 6 5.8555 -1.1661 5.3432 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.7083 1.1608 -3.4843 32 1 0.7375 -2.1443 1.9994 33 1 1.5293 -2.5969 0.4709 34 1 2.4627 -2.5819 1.9865 35 1 3.9016 -1.6024 3.0167 36 1 2.4483 -1.0891 3.9069 37 1 3.5393 1.0716 4.4438 38 1 4.9929 0.5589 3.5536 39 1 2.9612 0.0576 6.5696 40 1 3.7776 -1.1107 8.5776 41 1 6.4985 -0.5271 10.2012 42 1 7.5419 -1.8071 10.8648 43 1 7.9523 -1.0403 9.3116 44 1 7.2607 -2.3409 6.4458 45 1 6.4395 -1.1811 4.4349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931942327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:29 Heat of formation + Delta-G solvation = -109.118379 kcal Electronic energy + Delta-G solvation = -26464.602304 eV Core-core repulsion = 22573.420910 eV Total energy + Delta-G solvation = -3891.181394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94857 -40.18602 -38.10565 -37.21485 -36.94689 -35.23191 -34.71659 -32.00278 -31.87809 -30.54825 -30.12092 -27.57084 -27.31839 -26.11137 -23.83449 -23.13603 -22.02434 -19.98869 -19.85199 -18.76929 -18.53006 -17.91835 -17.19536 -17.13878 -17.10372 -16.57895 -16.24689 -15.97788 -15.86723 -15.35162 -14.83538 -14.61498 -14.44639 -14.26042 -14.11629 -13.90993 -13.82581 -13.63570 -13.59060 -13.25582 -13.11111 -13.00676 -12.95183 -12.94246 -12.75748 -12.69058 -12.59387 -12.35369 -12.19750 -12.13067 -12.00444 -11.86327 -11.52688 -11.20804 -10.69461 -10.48881 -10.07265 -9.99740 -9.32590 -8.15341 -6.31992 -0.82106 -0.16939 0.34734 1.40862 1.42908 1.50407 1.81775 1.96141 2.29131 2.42433 2.56329 3.07658 3.12339 3.22858 3.55114 3.76629 3.95747 4.00483 4.08529 4.14171 4.18191 4.25199 4.39764 4.41798 4.52642 4.63746 4.73373 4.76025 4.76607 4.84163 4.89434 4.99657 5.03806 5.05072 5.07920 5.12123 5.14802 5.20643 5.46902 5.56115 5.59583 5.66716 5.88655 6.03259 6.16090 6.75946 6.84601 7.31737 7.48835 8.88723 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.001959 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.700427 B =14287.324900 C =14558.654970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.603 5.603 13 C 0.079 3.921 14 C 0.492 3.508 15 O -0.605 6.605 16 C -0.118 4.118 17 C -0.068 4.068 18 C -0.028 4.028 19 C -0.143 4.143 20 C -0.030 4.030 21 C -0.669 4.669 22 S 2.508 3.492 23 C -0.626 4.626 24 O -0.977 6.977 25 O -0.978 6.978 26 C -0.030 4.030 27 C -0.145 4.145 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.985 -6.106 25.879 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.027 0.973 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.333 5.333 13 C -0.063 4.063 14 C 0.282 3.718 15 O -0.488 6.488 16 C -0.158 4.158 17 C -0.105 4.105 18 C -0.029 4.029 19 C -0.162 4.162 20 C -0.048 4.048 21 C -0.756 4.756 22 S 2.692 3.308 23 C -0.780 4.780 24 O -0.975 6.975 25 O -0.976 6.976 26 C -0.049 4.049 27 C -0.164 4.164 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.173 0.827 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.834 -6.292 25.823 28.702 hybrid contribution 0.017 0.769 -1.765 1.925 sum 10.851 -5.523 24.059 26.964 Atomic orbital electron populations 1.21862 0.97258 1.00013 0.99874 1.18520 0.91571 0.92247 0.81885 0.97347 1.21549 1.31908 1.13073 0.91162 0.92073 1.25761 0.95124 0.95683 1.02092 1.70018 1.37251 1.23887 1.24475 0.85506 0.78414 0.78958 0.78116 1.18744 1.20958 1.20219 1.48283 1.49139 1.13406 1.22498 1.21848 1.01291 0.80603 1.02569 1.21403 0.78165 0.86794 0.85457 1.90622 1.60180 1.19667 1.78329 1.21624 1.01854 0.99391 0.92893 1.20368 1.00035 0.97165 0.92967 1.20233 0.93990 0.93933 0.94695 1.21442 1.01093 1.01100 0.92523 1.21170 0.92996 0.91091 0.99587 1.30630 1.06858 1.19062 1.19003 1.04763 0.74936 0.76616 0.74519 1.30043 1.15690 1.17387 1.14846 1.93537 1.47878 1.83605 1.72455 1.93537 1.69457 1.54905 1.79665 1.21156 0.99009 0.93617 0.91127 1.21437 0.96585 0.98663 0.99676 0.96171 0.91482 0.93581 0.92649 0.91673 0.91453 0.89134 0.87186 0.86819 0.90514 0.90880 0.83740 0.82575 0.82883 0.82908 0.82955 0.82729 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.97 71.98 0.65 -5.73 16 2 C 0.26 13.56 2.64 44.24 0.12 13.67 16 3 H 0.01 0.53 6.90 -2.39 -0.02 0.52 16 4 C -0.54 -29.24 7.99 25.60 0.20 -29.03 16 5 H 0.06 3.21 7.33 -2.91 -0.02 3.18 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 8 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 9 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 N -0.60 -25.09 2.75 -826.79 -2.28 -27.36 16 13 C 0.08 2.43 9.24 127.77 1.18 3.61 16 14 C 0.49 19.49 7.67 87.66 0.67 20.16 16 15 O -0.61 -29.83 15.31 -3.05 -0.05 -29.87 16 16 C -0.12 -3.04 4.23 29.85 0.13 -2.91 16 17 C -0.07 -1.62 4.63 29.85 0.14 -1.48 16 18 C -0.03 -0.55 5.13 -19.86 -0.10 -0.65 16 19 C -0.14 -2.45 9.70 22.27 0.22 -2.24 16 20 C -0.03 -0.46 9.47 22.27 0.21 -0.25 16 21 C -0.67 -10.12 5.66 22.27 0.13 -9.99 16 22 S 2.51 31.32 5.80 -56.49 -0.33 31.00 16 23 C -0.63 -1.23 10.80 113.37 1.22 0.00 16 24 O -0.98 -19.05 17.13 -127.65 -2.19 -21.24 16 25 O -0.98 -19.31 17.13 -127.65 -2.19 -21.50 16 26 C -0.03 -0.49 9.47 22.27 0.21 -0.27 16 27 C -0.14 -2.58 9.70 22.27 0.22 -2.37 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 30 H 0.05 2.02 7.67 -2.39 -0.02 2.01 16 31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 34 H 0.09 2.10 6.44 -2.39 -0.02 2.09 16 35 H 0.11 2.42 7.40 -2.39 -0.02 2.41 16 36 H 0.11 2.39 8.11 -2.39 -0.02 2.37 16 37 H 0.08 1.96 8.04 -2.39 -0.02 1.94 16 38 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 39 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.16 1.82 7.57 -2.91 -0.02 1.79 16 41 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.16 1.91 7.57 -2.91 -0.02 1.89 16 45 H 0.14 2.21 8.06 -2.92 -0.02 2.18 16 Total: -1.00 -82.72 384.20 1.87 -80.85 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.98 Total: 12.24 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 5.64 Total: -16.33 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.03 Total: -80.18 kcal Atomic # 8 Polarization: -68.19 SS G_CDS: -4.42 Total: -72.61 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 31.32 SS G_CDS: -0.33 Total: 31.00 kcal Total: -82.72 1.87 -80.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931942327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.268 kcal (2) G-P(sol) polarization free energy of solvation -82.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds