Wall clock time and date at job start Tue Mar 31 2020 23:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99733 * 2 1 4 4 C 1.34771 * 120.00171 * 179.97438 * 2 1 3 5 5 O 1.21551 * 120.00210 * 8.30077 * 4 2 1 6 6 C 1.47840 * 120.00092 * 188.30508 * 4 2 1 7 7 C 1.39594 * 120.14217 * 343.19667 * 6 4 2 8 8 C 1.37945 * 119.85172 * 179.97438 * 7 6 4 9 9 C 1.38379 * 120.14679 * 0.28416 * 8 7 6 10 10 C 1.38343 * 120.28824 * 359.43529 * 9 8 7 11 11 C 1.50698 * 119.92539 * 180.25835 * 10 9 8 12 12 S 1.81395 * 109.47291 * 270.30265 * 11 10 9 13 13 O 1.42099 * 108.57965 * 294.48415 * 12 11 10 14 14 O 1.42102 * 108.58105 * 65.51321 * 12 11 10 15 15 C 1.81399 * 101.92428 * 179.97438 * 12 11 10 16 16 C 1.53001 * 109.47454 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.46905 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.46900 * 180.02562 * 17 16 15 19 19 H 1.08009 * 120.00049 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00110 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99934 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00017 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47139 * 89.99493 * 22 20 18 24 24 H 1.48499 * 109.46919 * 209.99841 * 22 20 18 25 25 H 1.48496 * 109.46846 * 329.99619 * 22 20 18 26 26 C 1.37979 * 120.14541 * 0.56299 * 10 9 8 27 27 H 1.08998 * 109.47203 * 270.00173 * 1 2 3 28 28 H 1.09000 * 109.47484 * 30.00559 * 1 2 3 29 29 H 1.09005 * 109.46899 * 150.00193 * 1 2 3 30 30 H 1.08998 * 109.46532 * 247.59161 * 3 2 1 31 31 H 1.09004 * 109.47068 * 7.58842 * 3 2 1 32 32 H 1.08994 * 109.47025 * 127.59290 * 3 2 1 33 33 H 1.08001 * 120.07651 * 0.02562 * 7 6 4 34 34 H 1.07998 * 119.92421 * 179.97438 * 8 7 6 35 35 H 1.07996 * 119.85360 * 179.70412 * 9 8 7 36 36 H 1.08999 * 109.47214 * 30.30204 * 11 10 9 37 37 H 1.09001 * 109.47169 * 150.30352 * 11 10 9 38 38 H 1.09005 * 109.47318 * 300.00265 * 15 12 11 39 39 H 1.09004 * 109.47247 * 59.99679 * 15 12 11 40 40 H 1.08994 * 109.47508 * 300.00126 * 16 15 12 41 41 H 1.09001 * 109.46742 * 60.00606 * 16 15 12 42 42 H 1.09000 * 109.47514 * 300.00081 * 17 16 15 43 43 H 1.08998 * 109.47414 * 60.00734 * 17 16 15 44 44 H 0.96995 * 119.99948 * 180.02562 * 21 20 18 45 45 H 1.07996 * 120.07215 * 179.74121 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5408 -2.2144 -0.1510 6 6 3.6057 -1.1737 0.1855 7 6 4.3396 0.0008 0.0108 8 6 5.7079 -0.0120 0.1854 9 6 6.3538 -1.1871 0.5272 10 6 5.6317 -2.3533 0.7074 11 6 6.3429 -3.6271 1.0853 12 16 6.8359 -4.5134 -0.4187 13 8 5.6627 -4.9279 -1.1050 14 8 7.8036 -3.7333 -1.1073 15 6 7.6562 -5.9807 0.2629 16 6 8.1493 -6.8676 -0.8822 17 6 8.8417 -8.1048 -0.3072 18 6 9.3279 -8.9780 -1.4351 19 1 9.1594 -8.6805 -2.4596 20 6 9.9869 -10.1573 -1.1592 21 7 10.1916 -10.5198 0.0883 22 14 10.5889 -11.2401 -2.5574 23 1 11.9708 -10.8443 -2.9301 24 1 10.5808 -12.6599 -2.1226 25 1 9.6936 -11.0765 -3.7307 26 6 4.2626 -2.3541 0.5359 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 2.7184 1.3875 -0.9501 31 1 1.4969 2.0928 0.1357 32 1 2.9221 1.2700 0.8142 33 1 3.8371 0.9178 -0.2597 34 1 6.2768 0.8959 0.0501 35 1 7.4258 -1.1928 0.6580 36 1 7.2291 -3.3878 1.6730 37 1 5.6748 -4.2551 1.6746 38 1 8.5039 -5.6718 0.8747 39 1 6.9499 -6.5397 0.8767 40 1 7.3014 -7.1765 -1.4935 41 1 8.8556 -6.3088 -1.4962 42 1 9.6897 -7.7956 0.3039 43 1 8.1358 -8.6638 0.3071 44 1 10.6555 -11.3492 0.2824 45 1 3.7006 -3.2661 0.6728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115969481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:42 Heat of formation + Delta-G solvation = -53.785837 kcal Electronic energy + Delta-G solvation = -26364.799073 eV Core-core repulsion = 22476.017079 eV Total energy + Delta-G solvation = -3888.781995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.88976 -38.85321 -36.76645 -36.25964 -35.81562 -34.64284 -33.53775 -32.17850 -31.57492 -29.34463 -27.95067 -27.11174 -27.05509 -23.72869 -23.42917 -22.20460 -20.56674 -20.14654 -18.72198 -17.42608 -17.08226 -16.80100 -16.57728 -16.28746 -16.17603 -16.01947 -15.50500 -15.15821 -14.74612 -14.46287 -14.25821 -14.06422 -13.89025 -13.64386 -13.34840 -12.98945 -12.90086 -12.79213 -12.59211 -12.45130 -12.23962 -11.92265 -11.84999 -11.73942 -11.71936 -11.27692 -11.08991 -10.97198 -10.90327 -10.81848 -10.36646 -10.21662 -9.91691 -9.41715 -9.36550 -9.18561 -9.11644 -8.94343 -8.39020 -6.04134 -4.06879 -0.02982 0.54887 1.01553 2.46548 2.52476 2.90574 3.32177 3.38114 3.42661 3.43363 3.68573 3.97410 4.08597 4.20357 4.38749 4.44434 4.49893 4.63718 4.73843 4.77375 4.82059 4.95054 5.00068 5.10364 5.12819 5.15668 5.17122 5.21986 5.32404 5.39110 5.46818 5.60532 5.84888 5.89688 5.95953 5.99764 6.07588 6.31843 6.48023 6.48653 6.84623 6.89910 7.58465 7.68524 7.76276 7.94095 8.34837 8.99291 9.57700 11.07099 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.002040 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.355597 B =13724.772403 C =14263.011227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.620 5.620 3 C 0.063 3.937 4 C 0.559 3.441 5 O -0.526 6.526 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.127 4.127 9 C -0.078 4.078 10 C -0.093 4.093 11 C -0.580 4.580 12 S 2.401 3.599 13 O -0.932 6.932 14 O -0.936 6.936 15 C -0.592 4.592 16 C -0.105 4.105 17 C 0.030 3.970 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.044 4.044 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.173 0.827 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 28.532 5.840 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.354 5.354 3 C -0.079 4.079 4 C 0.349 3.651 5 O -0.403 6.403 6 C -0.139 4.139 7 C -0.148 4.148 8 C -0.144 4.144 9 C -0.097 4.097 10 C -0.094 4.094 11 C -0.705 4.705 12 S 2.585 3.415 13 O -0.929 6.929 14 O -0.933 6.933 15 C -0.723 4.723 16 C -0.144 4.144 17 C -0.009 4.009 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.064 4.064 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.189 0.811 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.173 28.093 4.999 32.318 hybrid contribution 0.603 -0.844 0.357 1.097 sum -14.569 27.250 5.356 31.361 Atomic orbital electron populations 1.21721 0.78504 1.03602 1.02025 1.47553 1.07294 1.05993 1.74593 1.22569 0.97852 0.85565 1.01929 1.18337 0.87060 0.83299 0.76432 1.90809 1.69824 1.31229 1.48403 1.19765 0.92908 0.94922 1.06315 1.23195 0.95040 0.99450 0.97085 1.21183 0.94369 0.98359 1.00535 1.21459 1.00707 0.91907 0.95635 1.18915 0.93408 0.93584 1.03487 1.29504 1.10790 1.07137 1.23034 1.08812 0.76477 0.78185 0.78060 1.93587 1.48223 1.81808 1.69296 1.93556 1.61310 1.69168 1.69304 1.30320 1.13038 1.17109 1.11820 1.21527 1.00989 0.98021 0.93890 1.19087 0.95300 0.90015 0.96467 1.21259 1.36673 1.05298 0.93118 0.92334 1.25024 0.95974 0.97774 0.95658 1.69955 1.42123 1.23566 1.17833 0.86546 0.79218 0.79614 0.82384 1.20582 1.21181 1.19725 1.21253 0.93252 0.97922 0.93960 0.92534 0.91011 0.90069 0.90836 0.90328 0.89901 0.81074 0.84719 0.84579 0.83835 0.83856 0.85303 0.85255 0.91363 0.91407 0.96101 0.96071 0.92919 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.45 59.85 0.63 1.15 16 2 N -0.62 -4.94 3.27 -209.82 -0.69 -5.62 16 3 C 0.06 0.23 8.54 59.85 0.51 0.75 16 4 C 0.56 6.69 7.58 -12.33 -0.09 6.60 16 5 O -0.53 -8.35 16.02 5.32 0.09 -8.26 16 6 C -0.14 -1.53 5.81 -104.97 -0.61 -2.14 16 7 C -0.13 -1.03 7.95 -39.18 -0.31 -1.35 16 8 C -0.13 -1.00 10.03 -39.64 -0.40 -1.40 16 9 C -0.08 -0.77 9.69 -39.49 -0.38 -1.15 16 10 C -0.09 -1.06 5.13 -104.68 -0.54 -1.60 16 11 C -0.58 -5.76 5.93 36.00 0.21 -5.55 16 12 S 2.40 34.92 4.70 -107.50 -0.51 34.42 16 13 O -0.93 -17.00 18.10 -57.83 -1.05 -18.05 16 14 O -0.94 -16.11 18.10 -57.83 -1.05 -17.16 16 15 C -0.59 -8.88 5.81 37.16 0.22 -8.67 16 16 C -0.11 -2.18 5.16 -26.73 -0.14 -2.31 16 17 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 18 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 19 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 22 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.04 -0.55 9.24 -39.18 -0.36 -0.92 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.25 7.99 -51.93 -0.41 -0.16 16 29 H 0.08 0.66 7.33 -51.93 -0.38 0.28 16 30 H 0.07 0.21 6.67 -51.93 -0.35 -0.14 16 31 H 0.08 0.11 7.87 -51.93 -0.41 -0.29 16 32 H 0.08 0.27 5.90 -51.93 -0.31 -0.04 16 33 H 0.17 0.76 2.81 -75.21 -0.21 0.55 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 0.97 8.09 -51.92 -0.42 0.55 16 37 H 0.14 1.09 8.08 -51.92 -0.42 0.67 16 38 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.14 1.85 7.75 -52.49 -0.41 1.44 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -40.03 386.84 -10.13 -50.16 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.66 Total: -2.42 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -1.82 Total: -29.71 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.05 Total: -31.61 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -2.01 Total: -43.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 34.92 SS G_CDS: -0.51 Total: 34.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -40.03 -10.13 -50.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115969481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.625 kcal (2) G-P(sol) polarization free energy of solvation -40.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds