Wall clock time and date at job start Tue Mar 31 2020 23:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99733 * 2 1 4 4 C 1.34771 * 120.00171 * 179.97438 * 2 1 3 5 5 O 1.21551 * 120.00210 * 8.30077 * 4 2 1 6 6 C 1.47840 * 120.00092 * 188.30508 * 4 2 1 7 7 C 1.39594 * 120.14217 * 343.19667 * 6 4 2 8 8 C 1.37945 * 119.85172 * 179.97438 * 7 6 4 9 9 C 1.38379 * 120.14679 * 0.28416 * 8 7 6 10 10 C 1.38343 * 120.28824 * 359.43529 * 9 8 7 11 11 C 1.50698 * 119.92539 * 180.25835 * 10 9 8 12 12 S 1.81395 * 109.47291 * 270.30265 * 11 10 9 13 13 O 1.42099 * 108.57965 * 294.48415 * 12 11 10 14 14 O 1.42102 * 108.58105 * 65.51321 * 12 11 10 15 15 C 1.81399 * 101.92428 * 179.97438 * 12 11 10 16 16 C 1.53001 * 109.47454 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.46905 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.46900 * 180.02562 * 17 16 15 19 19 H 1.08009 * 120.00049 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00110 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99934 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00017 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47139 * 89.99493 * 22 20 18 24 24 H 1.48499 * 109.46919 * 209.99841 * 22 20 18 25 25 H 1.48496 * 109.46846 * 329.99619 * 22 20 18 26 26 C 1.37979 * 120.14541 * 0.56299 * 10 9 8 27 27 H 1.08998 * 109.47203 * 270.00173 * 1 2 3 28 28 H 1.09000 * 109.47484 * 30.00559 * 1 2 3 29 29 H 1.09005 * 109.46899 * 150.00193 * 1 2 3 30 30 H 1.08998 * 109.46532 * 247.59161 * 3 2 1 31 31 H 1.09004 * 109.47068 * 7.58842 * 3 2 1 32 32 H 1.08994 * 109.47025 * 127.59290 * 3 2 1 33 33 H 1.08001 * 120.07651 * 0.02562 * 7 6 4 34 34 H 1.07998 * 119.92421 * 179.97438 * 8 7 6 35 35 H 1.07996 * 119.85360 * 179.70412 * 9 8 7 36 36 H 1.08999 * 109.47214 * 30.30204 * 11 10 9 37 37 H 1.09001 * 109.47169 * 150.30352 * 11 10 9 38 38 H 1.09005 * 109.47318 * 300.00265 * 15 12 11 39 39 H 1.09004 * 109.47247 * 59.99679 * 15 12 11 40 40 H 1.08994 * 109.47508 * 300.00126 * 16 15 12 41 41 H 1.09001 * 109.46742 * 60.00606 * 16 15 12 42 42 H 1.09000 * 109.47514 * 300.00081 * 17 16 15 43 43 H 1.08998 * 109.47414 * 60.00734 * 17 16 15 44 44 H 0.96995 * 119.99948 * 180.02562 * 21 20 18 45 45 H 1.07996 * 120.07215 * 179.74121 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5408 -2.2144 -0.1510 6 6 3.6057 -1.1737 0.1855 7 6 4.3396 0.0008 0.0108 8 6 5.7079 -0.0120 0.1854 9 6 6.3538 -1.1871 0.5272 10 6 5.6317 -2.3533 0.7074 11 6 6.3429 -3.6271 1.0853 12 16 6.8359 -4.5134 -0.4187 13 8 5.6627 -4.9279 -1.1050 14 8 7.8036 -3.7333 -1.1073 15 6 7.6562 -5.9807 0.2629 16 6 8.1493 -6.8676 -0.8822 17 6 8.8417 -8.1048 -0.3072 18 6 9.3279 -8.9780 -1.4351 19 1 9.1594 -8.6805 -2.4596 20 6 9.9869 -10.1573 -1.1592 21 7 10.1916 -10.5198 0.0883 22 14 10.5889 -11.2401 -2.5574 23 1 11.9708 -10.8443 -2.9301 24 1 10.5808 -12.6599 -2.1226 25 1 9.6936 -11.0765 -3.7307 26 6 4.2626 -2.3541 0.5359 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 2.7184 1.3875 -0.9501 31 1 1.4969 2.0928 0.1357 32 1 2.9221 1.2700 0.8142 33 1 3.8371 0.9178 -0.2597 34 1 6.2768 0.8959 0.0501 35 1 7.4258 -1.1928 0.6580 36 1 7.2291 -3.3878 1.6730 37 1 5.6748 -4.2551 1.6746 38 1 8.5039 -5.6718 0.8747 39 1 6.9499 -6.5397 0.8767 40 1 7.3014 -7.1765 -1.4935 41 1 8.8556 -6.3088 -1.4962 42 1 9.6897 -7.7956 0.3039 43 1 8.1358 -8.6638 0.3071 44 1 10.6555 -11.3492 0.2824 45 1 3.7006 -3.2661 0.6728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115969481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:41 Heat of formation + Delta-G solvation = -83.217091 kcal Electronic energy + Delta-G solvation = -26366.075308 eV Core-core repulsion = 22476.017079 eV Total energy + Delta-G solvation = -3890.058230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62720 -39.61244 -38.02882 -37.09836 -36.97306 -36.44712 -34.27270 -34.16985 -32.28817 -30.02147 -29.59554 -27.89870 -27.68925 -25.59564 -24.11380 -23.04530 -22.20437 -20.92810 -19.89150 -18.64710 -18.17349 -17.80725 -17.66260 -17.39981 -17.05531 -16.86414 -16.70656 -16.47974 -16.04013 -15.68898 -15.41854 -14.70673 -14.58151 -14.50419 -14.35729 -14.09711 -13.88580 -13.65796 -13.51977 -13.51576 -13.42269 -13.13622 -13.06279 -13.01326 -12.96942 -12.75778 -12.61961 -12.49259 -12.17798 -12.01743 -11.74918 -11.63119 -11.37710 -11.01350 -10.97483 -10.58526 -10.12964 -9.81345 -9.70841 -8.24112 -6.34955 -1.13877 -0.22277 0.28008 1.38554 1.39640 1.51157 1.66968 1.81193 1.92751 2.38392 2.57805 2.74888 3.02761 3.09059 3.34359 3.37240 3.73941 3.78768 3.91762 3.99385 4.05931 4.18407 4.28168 4.32079 4.42155 4.42847 4.46294 4.50323 4.65989 4.66739 4.77253 4.81179 4.90335 4.91432 4.95683 5.05021 5.16126 5.27830 5.33839 5.43969 5.44043 5.62317 5.78192 5.80903 6.19063 6.19105 6.79970 6.98079 7.34024 8.87247 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.002040 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.355597 B =13724.772403 C =14263.011227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.048 3.952 4 C 0.547 3.453 5 O -0.586 6.586 6 C -0.158 4.158 7 C -0.116 4.116 8 C -0.122 4.122 9 C -0.087 4.087 10 C -0.116 4.116 11 C -0.549 4.549 12 S 2.403 3.597 13 O -0.982 6.982 14 O -0.968 6.968 15 C -0.596 4.596 16 C -0.107 4.107 17 C 0.030 3.970 18 C -0.555 4.555 19 H 0.056 0.944 20 C 0.003 3.997 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.072 4.072 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.211 0.789 34 H 0.175 0.825 35 H 0.157 0.843 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.008 0.992 43 H 0.004 0.996 44 H 0.265 0.735 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 32.039 6.427 35.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C -0.092 4.092 4 C 0.337 3.663 5 O -0.467 6.467 6 C -0.161 4.161 7 C -0.133 4.133 8 C -0.140 4.140 9 C -0.106 4.106 10 C -0.118 4.118 11 C -0.679 4.679 12 S 2.593 3.407 13 O -0.979 6.979 14 O -0.966 6.966 15 C -0.725 4.725 16 C -0.146 4.146 17 C -0.008 4.008 18 C -0.593 4.593 19 H 0.075 0.925 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.788 3.212 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.192 1.192 26 C -0.093 4.093 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.226 0.774 34 H 0.193 0.807 35 H 0.174 0.826 36 H 0.204 0.796 37 H 0.186 0.814 38 H 0.175 0.825 39 H 0.167 0.833 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.026 0.974 43 H 0.022 0.978 44 H 0.074 0.926 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.641 31.608 5.541 35.272 hybrid contribution 0.362 -1.732 0.252 1.787 sum -14.280 29.876 5.793 33.616 Atomic orbital electron populations 1.21879 0.77746 1.04000 1.02728 1.47725 1.08096 1.06321 1.72351 1.22906 0.98973 0.84235 1.03086 1.18682 0.87658 0.83744 0.76217 1.90768 1.70907 1.33490 1.51561 1.19923 0.92801 0.95909 1.07428 1.23734 0.95249 0.99491 0.94876 1.21719 0.94462 0.99196 0.98603 1.21894 1.01839 0.91953 0.94907 1.19078 0.93043 0.94689 1.04958 1.29225 1.13052 1.06249 1.19327 1.08412 0.75108 0.77730 0.79473 1.93528 1.49466 1.82730 1.72167 1.93503 1.62109 1.69287 1.71665 1.30270 1.14827 1.17193 1.10257 1.21306 1.00265 0.97239 0.95743 1.18986 0.94706 0.91622 0.95490 1.21735 1.37181 1.06407 0.93931 0.92530 1.25934 0.96027 0.99218 0.98378 1.70060 1.42717 1.24202 1.19782 0.85472 0.78937 0.77727 0.79097 1.19503 1.20355 1.19211 1.21302 0.94160 0.98028 0.95769 0.91692 0.87427 0.92808 0.89271 0.87065 0.88815 0.77361 0.80720 0.82578 0.79596 0.81438 0.82473 0.83273 0.92392 0.91753 0.97374 0.97803 0.92572 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.45 127.77 1.34 2.24 16 2 N -0.61 -8.89 3.27 -936.01 -3.06 -11.95 16 3 C 0.05 0.17 8.54 127.77 1.09 1.26 16 4 C 0.55 13.41 7.58 86.79 0.66 14.07 16 5 O -0.59 -20.17 16.02 -3.88 -0.06 -20.23 16 6 C -0.16 -3.47 5.81 -20.09 -0.12 -3.59 16 7 C -0.12 -1.50 7.95 22.53 0.18 -1.32 16 8 C -0.12 -1.45 10.03 22.23 0.22 -1.22 16 9 C -0.09 -1.44 9.69 22.33 0.22 -1.23 16 10 C -0.12 -2.50 5.13 -19.90 -0.10 -2.60 16 11 C -0.55 -9.82 5.93 71.24 0.42 -9.39 16 12 S 2.40 69.94 4.70 -56.49 -0.27 69.68 16 13 O -0.98 -37.63 18.10 -127.37 -2.31 -39.94 16 14 O -0.97 -33.24 18.10 -127.37 -2.30 -35.55 16 15 C -0.60 -17.73 5.81 71.98 0.42 -17.32 16 16 C -0.11 -4.57 5.16 30.59 0.16 -4.41 16 17 C 0.03 1.59 4.97 29.85 0.15 1.74 16 18 C -0.55 -32.48 9.11 25.60 0.23 -32.25 16 19 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 20 C 0.00 0.16 5.46 84.66 0.46 0.62 16 21 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 22 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C -0.07 -1.85 9.24 22.53 0.21 -1.64 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.11 0.45 7.99 -2.39 -0.02 0.43 16 29 H 0.05 0.93 7.33 -2.38 -0.02 0.92 16 30 H 0.09 0.11 6.67 -2.39 -0.02 0.09 16 31 H 0.11 -0.24 7.87 -2.39 -0.02 -0.26 16 32 H 0.09 0.19 5.90 -2.39 -0.01 0.18 16 33 H 0.21 0.92 2.81 -24.26 -0.07 0.85 16 34 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.19 1.74 8.09 -2.39 -0.02 1.72 16 37 H 0.17 2.23 8.08 -2.39 -0.02 2.21 16 38 H 0.16 3.71 8.14 -2.39 -0.02 3.69 16 39 H 0.15 3.79 8.14 -2.39 -0.02 3.77 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.12 3.46 7.75 -2.91 -0.02 3.43 16 Total: -1.00 -93.95 386.84 0.77 -93.18 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.93 Total: 8.60 kcal Atomic # 6 Polarization: -60.56 SS G_CDS: 5.53 Total: -55.03 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -2.78 Total: -67.89 kcal Atomic # 8 Polarization: -91.05 SS G_CDS: -4.67 Total: -95.72 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 69.94 SS G_CDS: -0.27 Total: 69.68 kcal Total: -93.95 0.77 -93.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115969481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.963 kcal (2) G-P(sol) polarization free energy of solvation -93.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds