Wall clock time and date at job start Tue Mar 31 2020 23:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 116.99942 * 2 1 4 4 O 1.20827 * 119.99994 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00506 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47402 * 180.02562 * 5 3 2 7 7 C 1.36949 * 119.99737 * 263.30376 * 6 5 3 8 8 H 1.08007 * 119.99981 * 207.12491 * 7 6 5 9 9 C 1.38989 * 120.00559 * 27.12728 * 7 6 5 10 10 N 1.31408 * 119.99333 * 6.48243 * 9 7 6 11 11 Si 1.86797 * 120.00510 * 186.48491 * 9 7 6 12 12 H 1.48494 * 109.47307 * 89.99541 * 11 9 7 13 13 H 1.48503 * 109.47122 * 210.00067 * 11 9 7 14 14 H 1.48501 * 109.46700 * 329.99907 * 11 9 7 15 15 C 1.34776 * 119.99927 * 83.30529 * 6 5 3 16 16 O 1.21629 * 120.00002 * 5.34304 * 15 6 5 17 17 C 1.47437 * 120.00076 * 185.34308 * 15 6 5 18 18 C 1.36665 * 125.77904 * 186.21098 * 17 15 6 19 19 N 1.34842 * 106.82386 * 179.71830 * 18 17 15 20 20 C 1.46496 * 126.59032 * 180.26587 * 19 18 17 21 21 C 1.50698 * 109.47507 * 124.99954 * 20 19 18 22 22 O 1.21288 * 119.99671 * 359.97438 * 21 20 19 23 23 N 1.34772 * 120.00299 * 179.97438 * 21 20 19 24 24 C 1.46504 * 120.00090 * 180.02562 * 23 21 20 25 25 C 1.46506 * 120.00115 * 0.02562 * 23 21 20 26 26 N 1.40206 * 106.81463 * 0.26265 * 19 18 17 27 27 N 1.28757 * 108.38894 * 359.97438 * 26 19 18 28 28 H 1.09007 * 109.46796 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47034 * 299.99491 * 1 2 3 30 30 H 1.09001 * 109.47540 * 59.99970 * 1 2 3 31 31 H 1.09002 * 109.47205 * 59.99871 * 5 3 2 32 32 H 1.09002 * 109.46535 * 300.00489 * 5 3 2 33 33 H 0.97005 * 119.99334 * 179.97438 * 10 9 7 34 34 H 1.07996 * 126.58972 * 359.97438 * 18 17 15 35 35 H 1.09001 * 109.46782 * 245.00074 * 20 19 18 36 36 H 1.09003 * 109.47634 * 4.99557 * 20 19 18 37 37 H 1.09001 * 109.47090 * 359.97438 * 24 23 21 38 38 H 1.08999 * 109.47399 * 119.99889 * 24 23 21 39 39 H 1.08999 * 109.47243 * 240.00092 * 24 23 21 40 40 H 1.08995 * 109.46592 * 89.99860 * 25 23 21 41 41 H 1.08996 * 109.47048 * 210.00407 * 25 23 21 42 42 H 1.09000 * 109.46393 * 330.00054 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.3078 3.2981 -1.1775 8 1 5.0007 4.1266 -1.1787 9 6 3.7473 2.8594 -2.3713 10 7 2.8102 1.9383 -2.3577 11 14 4.3261 3.5789 -3.9951 12 1 5.4580 2.7727 -4.5184 13 1 3.2086 3.5565 -4.9728 14 1 4.7717 4.9798 -3.7848 15 6 4.0426 3.3640 1.1598 16 8 3.8477 2.7910 2.2148 17 6 4.3457 4.8068 1.1496 18 6 4.5538 5.5874 2.2519 19 7 4.8048 6.8347 1.8051 20 6 5.0937 8.0141 2.6245 21 6 6.3990 8.6248 2.1837 22 8 7.0265 8.1236 1.2748 23 7 6.8690 9.7276 2.7994 24 6 8.1377 10.3215 2.3705 25 6 6.1113 10.3326 3.8977 26 7 4.7362 6.7856 0.4056 27 7 4.4613 5.5778 0.0544 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9557 0.7811 -0.8908 32 1 3.9563 0.7807 0.8891 33 1 2.4188 1.6323 -3.1908 34 1 4.5270 5.2661 3.2826 35 1 4.2927 8.7439 2.5059 36 1 5.1653 7.7204 3.6718 37 1 8.5525 9.7380 1.5485 38 1 7.9659 11.3456 2.0391 39 1 8.8390 10.3225 3.2050 40 1 6.4275 9.8919 4.8432 41 1 6.2955 11.4067 3.9178 42 1 5.0472 10.1491 3.7492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116110949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:16 Heat of formation + Delta-G solvation = -9.369272 kcal Electronic energy + Delta-G solvation = -29964.581564 eV Core-core repulsion = 25563.725153 eV Total energy + Delta-G solvation = -4400.856411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53329 -39.99324 -39.27716 -37.94827 -35.88620 -35.31988 -34.54480 -34.13869 -31.42032 -30.36293 -29.62963 -28.35405 -27.70940 -26.25630 -25.75407 -24.72679 -22.36536 -21.90122 -20.30675 -19.82659 -19.09936 -17.93377 -17.59084 -16.76229 -16.47116 -16.31848 -15.88365 -15.56390 -15.39114 -15.07050 -15.01952 -14.36078 -14.26411 -13.97940 -13.79523 -13.63203 -13.22133 -13.08923 -12.94160 -12.84131 -12.57891 -12.39367 -12.36184 -12.15237 -11.58395 -11.27087 -11.19236 -11.15575 -10.89545 -10.64547 -10.45235 -10.24295 -9.89274 -9.71835 -9.63302 -9.32877 -9.10053 -8.91652 -8.75504 -8.48656 -7.75743 -6.33061 -3.86433 1.68745 2.24591 2.26221 2.67211 2.77451 3.29425 3.34653 3.44866 3.71604 3.84513 3.96557 4.25398 4.37375 4.46441 4.53724 4.68863 4.72157 4.85549 4.93361 5.01612 5.16064 5.19078 5.21769 5.52931 5.62830 5.76653 5.84507 5.88087 5.91360 6.00109 6.03222 6.26670 6.46784 6.62760 6.74200 6.80525 6.92886 7.55304 7.66584 7.72949 7.80666 8.50587 8.76007 9.15111 9.22752 9.44085 9.81057 10.74832 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.003225 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.139662 B = 8679.137138 C = 9970.320154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.499 6.499 5 C 0.158 3.842 6 N -0.407 5.407 7 C -0.310 4.310 8 H 0.125 0.875 9 C 0.038 3.962 10 N -0.882 5.882 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.263 1.263 15 C 0.540 3.460 16 O -0.606 6.606 17 C -0.046 4.046 18 C 0.059 3.941 19 N -0.371 5.371 20 C 0.113 3.887 21 C 0.500 3.500 22 O -0.499 6.499 23 N -0.624 5.624 24 C 0.081 3.919 25 C 0.073 3.927 26 N -0.066 5.066 27 N -0.169 5.169 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.271 0.729 34 H 0.196 0.804 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.286 11.824 12.197 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.330 3.670 4 O -0.384 6.384 5 C 0.033 3.967 6 N -0.123 5.123 7 C -0.438 4.438 8 H 0.142 0.858 9 C -0.165 4.165 10 N -0.522 5.522 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.187 1.187 15 C 0.328 3.672 16 O -0.492 6.492 17 C -0.183 4.183 18 C -0.095 4.095 19 N -0.158 5.158 20 C -0.013 4.013 21 C 0.285 3.715 22 O -0.371 6.371 23 N -0.361 5.361 24 C -0.061 4.061 25 C -0.070 4.070 26 N -0.046 5.046 27 N -0.043 5.043 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.212 0.788 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.313 12.287 10.756 16.890 hybrid contribution -0.323 0.194 0.110 0.393 sum 3.990 12.481 10.866 17.023 Atomic orbital electron populations 1.22908 0.78858 1.01664 1.01570 1.86446 1.21535 1.35525 1.85842 1.23771 0.92137 0.80537 0.70599 1.90519 1.66429 1.36333 1.45107 1.20472 0.87366 0.85219 1.03670 1.43196 1.54847 1.07850 1.06390 1.20284 1.24660 1.16542 0.82354 0.85830 1.25345 0.94491 0.96427 1.00269 1.69624 1.24603 1.29725 1.28214 0.85834 0.77858 0.80137 0.80488 1.20442 1.21116 1.18672 1.16737 0.82720 0.83443 0.84256 1.90627 1.58265 1.69119 1.31200 1.21442 1.11909 0.96993 0.87969 1.23096 1.01264 0.83805 1.01318 1.49817 1.50492 1.07200 1.08281 1.21556 0.96981 0.87416 0.95375 1.20554 0.87207 0.80778 0.82990 1.90849 1.58143 1.60290 1.27825 1.47665 1.23835 1.28420 1.36186 1.21696 0.84529 0.98502 1.01378 1.21882 0.96400 0.99411 0.89274 1.82111 1.21072 1.15084 0.86285 1.75137 1.08137 0.96702 1.24320 0.89703 0.93261 0.92674 0.85661 0.89982 0.91845 0.78753 0.86158 0.85482 0.89317 0.92061 0.92134 0.92037 0.90500 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.33 10.57 -39.26 -0.41 -8.74 16 3 C 0.49 12.50 5.99 36.01 0.22 12.72 16 4 O -0.50 -14.39 15.50 -18.75 -0.29 -14.69 16 5 C 0.16 3.92 5.17 -5.19 -0.03 3.90 16 6 N -0.41 -10.91 2.17 -117.30 -0.25 -11.16 16 7 C -0.31 -8.47 8.34 -14.99 -0.12 -8.59 16 8 H 0.12 3.43 5.48 -52.48 -0.29 3.14 16 9 C 0.04 1.02 5.16 -17.45 -0.09 0.93 16 10 N -0.88 -23.98 8.74 55.50 0.48 -23.50 16 11 Si 0.93 21.55 29.56 -169.99 -5.02 16.53 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.54 14.09 7.37 -12.51 -0.09 14.00 16 16 O -0.61 -16.05 16.53 5.25 0.09 -15.96 16 17 C -0.05 -1.07 6.68 -83.55 -0.56 -1.63 16 18 C 0.06 1.07 11.28 -16.80 -0.19 0.88 16 19 N -0.37 -6.22 3.41 -62.22 -0.21 -6.43 16 20 C 0.11 1.15 5.57 -5.20 -0.03 1.13 16 21 C 0.50 6.12 7.71 -10.99 -0.08 6.04 16 22 O -0.50 -8.89 15.06 5.55 0.08 -8.80 16 23 N -0.62 -5.17 3.27 -189.51 -0.62 -5.79 16 24 C 0.08 0.61 10.69 59.85 0.64 1.25 16 25 C 0.07 0.27 10.29 59.85 0.62 0.89 16 26 N -0.07 -1.43 12.88 60.35 0.78 -0.66 16 27 N -0.17 -4.17 9.05 32.84 0.30 -3.87 16 28 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.13 3.07 6.64 -51.93 -0.34 2.73 16 32 H 0.08 1.87 7.56 -51.93 -0.39 1.48 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.20 2.72 8.06 -52.49 -0.42 2.30 16 35 H 0.12 0.89 7.40 -51.93 -0.38 0.51 16 36 H 0.13 0.75 8.05 -51.93 -0.42 0.33 16 37 H 0.09 0.90 6.90 -51.93 -0.36 0.54 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.08 0.18 8.07 -51.93 -0.42 -0.23 16 42 H 0.07 0.18 6.44 -51.93 -0.33 -0.15 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -40.01 364.60 -3.28 -43.29 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.03 Total: 0.91 kcal Atomic # 6 Polarization: 32.04 SS G_CDS: 1.34 Total: 33.38 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.47 Total: -51.41 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.54 Total: -48.19 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -40.01 -3.28 -43.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116110949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.922 kcal (2) G-P(sol) polarization free energy of solvation -40.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds