Wall clock time and date at job start Tue Mar 31 2020 23:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 116.99942 * 2 1 4 4 O 1.20827 * 119.99994 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00506 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47402 * 180.02562 * 5 3 2 7 7 C 1.36949 * 119.99737 * 263.30376 * 6 5 3 8 8 H 1.08007 * 119.99981 * 207.12491 * 7 6 5 9 9 C 1.38989 * 120.00559 * 27.12728 * 7 6 5 10 10 N 1.31408 * 119.99333 * 6.48243 * 9 7 6 11 11 Si 1.86797 * 120.00510 * 186.48491 * 9 7 6 12 12 H 1.48494 * 109.47307 * 89.99541 * 11 9 7 13 13 H 1.48503 * 109.47122 * 210.00067 * 11 9 7 14 14 H 1.48501 * 109.46700 * 329.99907 * 11 9 7 15 15 C 1.34776 * 119.99927 * 83.30529 * 6 5 3 16 16 O 1.21629 * 120.00002 * 5.34304 * 15 6 5 17 17 C 1.47437 * 120.00076 * 185.34308 * 15 6 5 18 18 C 1.36665 * 125.77904 * 186.21098 * 17 15 6 19 19 N 1.34842 * 106.82386 * 179.71830 * 18 17 15 20 20 C 1.46496 * 126.59032 * 180.26587 * 19 18 17 21 21 C 1.50698 * 109.47507 * 124.99954 * 20 19 18 22 22 O 1.21288 * 119.99671 * 359.97438 * 21 20 19 23 23 N 1.34772 * 120.00299 * 179.97438 * 21 20 19 24 24 C 1.46504 * 120.00090 * 180.02562 * 23 21 20 25 25 C 1.46506 * 120.00115 * 0.02562 * 23 21 20 26 26 N 1.40206 * 106.81463 * 0.26265 * 19 18 17 27 27 N 1.28757 * 108.38894 * 359.97438 * 26 19 18 28 28 H 1.09007 * 109.46796 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47034 * 299.99491 * 1 2 3 30 30 H 1.09001 * 109.47540 * 59.99970 * 1 2 3 31 31 H 1.09002 * 109.47205 * 59.99871 * 5 3 2 32 32 H 1.09002 * 109.46535 * 300.00489 * 5 3 2 33 33 H 0.97005 * 119.99334 * 179.97438 * 10 9 7 34 34 H 1.07996 * 126.58972 * 359.97438 * 18 17 15 35 35 H 1.09001 * 109.46782 * 245.00074 * 20 19 18 36 36 H 1.09003 * 109.47634 * 4.99557 * 20 19 18 37 37 H 1.09001 * 109.47090 * 359.97438 * 24 23 21 38 38 H 1.08999 * 109.47399 * 119.99889 * 24 23 21 39 39 H 1.08999 * 109.47243 * 240.00092 * 24 23 21 40 40 H 1.08995 * 109.46592 * 89.99860 * 25 23 21 41 41 H 1.08996 * 109.47048 * 210.00407 * 25 23 21 42 42 H 1.09000 * 109.46393 * 330.00054 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.3078 3.2981 -1.1775 8 1 5.0007 4.1266 -1.1787 9 6 3.7473 2.8594 -2.3713 10 7 2.8102 1.9383 -2.3577 11 14 4.3261 3.5789 -3.9951 12 1 5.4580 2.7727 -4.5184 13 1 3.2086 3.5565 -4.9728 14 1 4.7717 4.9798 -3.7848 15 6 4.0426 3.3640 1.1598 16 8 3.8477 2.7910 2.2148 17 6 4.3457 4.8068 1.1496 18 6 4.5538 5.5874 2.2519 19 7 4.8048 6.8347 1.8051 20 6 5.0937 8.0141 2.6245 21 6 6.3990 8.6248 2.1837 22 8 7.0265 8.1236 1.2748 23 7 6.8690 9.7276 2.7994 24 6 8.1377 10.3215 2.3705 25 6 6.1113 10.3326 3.8977 26 7 4.7362 6.7856 0.4056 27 7 4.4613 5.5778 0.0544 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9557 0.7811 -0.8908 32 1 3.9563 0.7807 0.8891 33 1 2.4188 1.6323 -3.1908 34 1 4.5270 5.2661 3.2826 35 1 4.2927 8.7439 2.5059 36 1 5.1653 7.7204 3.6718 37 1 8.5525 9.7380 1.5485 38 1 7.9659 11.3456 2.0391 39 1 8.8390 10.3225 3.2050 40 1 6.4275 9.8919 4.8432 41 1 6.2955 11.4067 3.9178 42 1 5.0472 10.1491 3.7492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116110949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:15 Heat of formation + Delta-G solvation = -40.184283 kcal Electronic energy + Delta-G solvation = -29965.917803 eV Core-core repulsion = 25563.725153 eV Total energy + Delta-G solvation = -4402.192650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.04005 -41.24038 -40.87703 -39.84402 -37.24542 -36.66681 -36.50058 -35.48425 -33.43509 -31.93609 -30.81824 -29.85477 -28.42699 -27.80010 -26.77436 -26.52553 -24.08408 -23.26265 -22.04790 -21.30194 -20.56739 -19.51334 -18.46275 -18.44559 -18.14460 -17.53073 -17.29229 -17.06505 -16.82730 -16.68084 -16.33272 -16.16934 -16.06476 -15.33744 -15.20771 -14.76288 -14.58291 -14.43903 -14.19888 -13.96973 -13.67537 -13.40801 -13.35136 -13.29603 -13.11421 -12.99186 -12.94424 -12.79996 -12.63600 -12.48725 -12.10828 -11.80979 -11.58982 -11.50958 -11.29523 -10.91722 -10.84798 -10.70577 -10.11100 -9.75337 -9.74441 -8.34053 -5.92677 0.27332 0.91339 1.13483 1.39525 1.43505 1.46859 1.59300 1.80674 1.96985 2.02176 2.36141 2.57533 2.79722 3.18970 3.25812 3.58684 3.64933 3.97752 4.07371 4.21308 4.28994 4.30986 4.39646 4.41768 4.45937 4.49985 4.53322 4.56211 4.73929 4.77981 4.79376 4.92012 4.96859 4.99011 5.38719 5.54717 5.62341 5.66652 5.78082 6.18768 6.46836 6.99166 7.03645 7.20541 7.30606 7.48506 7.82004 8.73217 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.003225 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.139662 B = 8679.137138 C = 9970.320154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.375 6.375 3 C 0.492 3.508 4 O -0.539 6.539 5 C 0.155 3.845 6 N -0.424 5.424 7 C -0.322 4.322 8 H 0.115 0.885 9 C 0.001 3.999 10 N -0.901 5.901 11 Si 0.987 3.013 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.276 1.276 15 C 0.535 3.465 16 O -0.619 6.619 17 C -0.097 4.097 18 C 0.096 3.904 19 N -0.351 5.351 20 C 0.101 3.899 21 C 0.491 3.509 22 O -0.571 6.571 23 N -0.615 5.615 24 C 0.077 3.923 25 C 0.062 3.938 26 N -0.093 5.093 27 N -0.211 5.211 28 H 0.135 0.865 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.270 0.730 34 H 0.242 0.758 35 H 0.157 0.843 36 H 0.184 0.816 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 13.306 14.703 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.292 6.292 3 C 0.335 3.665 4 O -0.427 6.427 5 C 0.030 3.970 6 N -0.140 5.140 7 C -0.450 4.450 8 H 0.132 0.868 9 C -0.200 4.200 10 N -0.541 5.541 11 Si 0.812 3.188 12 H -0.187 1.187 13 H -0.209 1.209 14 H -0.201 1.201 15 C 0.325 3.675 16 O -0.506 6.506 17 C -0.236 4.236 18 C -0.060 4.060 19 N -0.137 5.137 20 C -0.022 4.022 21 C 0.278 3.722 22 O -0.449 6.449 23 N -0.349 5.349 24 C -0.065 4.065 25 C -0.079 4.079 26 N -0.072 5.072 27 N -0.084 5.084 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.141 0.859 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.258 0.742 35 H 0.175 0.825 36 H 0.201 0.799 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.079 13.825 13.307 19.617 hybrid contribution -0.244 -0.100 -0.411 0.488 sum 3.834 13.725 12.896 19.219 Atomic orbital electron populations 1.23280 0.76273 1.04809 1.01100 1.86413 1.24006 1.33608 1.85125 1.23856 0.92390 0.80776 0.69491 1.90488 1.67304 1.37775 1.47163 1.20542 0.87395 0.84911 1.04141 1.43353 1.55547 1.08546 1.06553 1.20305 1.24988 1.16694 0.83022 0.86801 1.26019 0.94593 0.96796 1.02610 1.69712 1.25303 1.30530 1.28537 0.84996 0.77793 0.78777 0.77244 1.18728 1.20905 1.20077 1.17182 0.81746 0.84694 0.83885 1.90576 1.58842 1.69916 1.31313 1.21461 1.15829 0.96435 0.89857 1.23654 0.97427 0.83156 1.01785 1.50117 1.47697 1.08638 1.07209 1.22327 0.97068 0.86008 0.96833 1.20925 0.87443 0.81424 0.82393 1.90841 1.60235 1.62690 1.31144 1.47823 1.23902 1.26971 1.36179 1.21789 0.84812 0.98690 1.01247 1.22276 0.96944 1.00413 0.88250 1.81968 1.21952 1.14092 0.89220 1.75076 1.09522 0.97810 1.25997 0.84716 0.93039 0.93904 0.85929 0.88491 0.91974 0.74165 0.82523 0.79916 0.92763 0.90089 0.89867 0.90007 0.88770 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.37 -16.49 10.57 -51.42 -0.54 -17.03 16 3 C 0.49 25.59 5.99 71.24 0.43 26.02 16 4 O -0.54 -31.84 15.50 21.96 0.34 -31.50 16 5 C 0.16 7.90 5.17 85.63 0.44 8.34 16 6 N -0.42 -23.41 2.17 -643.29 -1.40 -24.81 16 7 C -0.32 -18.24 8.34 84.07 0.70 -17.54 16 8 H 0.11 6.63 5.48 -2.91 -0.02 6.62 16 9 C 0.00 0.04 5.16 84.94 0.44 0.48 16 10 N -0.90 -50.12 8.74 21.67 0.19 -49.93 16 11 Si 0.99 45.53 29.56 68.60 2.03 47.56 16 12 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 15 C 0.54 28.50 7.37 86.67 0.64 29.13 16 16 O -0.62 -32.91 16.53 -4.12 -0.07 -32.97 16 17 C -0.10 -4.61 6.68 40.80 0.27 -4.34 16 18 C 0.10 3.28 11.28 83.86 0.95 4.23 16 19 N -0.35 -11.08 3.41 -350.76 -1.20 -12.27 16 20 C 0.10 1.66 5.57 85.63 0.48 2.14 16 21 C 0.49 11.11 7.71 87.66 0.68 11.79 16 22 O -0.57 -20.68 15.06 -3.06 -0.05 -20.73 16 23 N -0.61 -8.41 3.27 -871.88 -2.85 -11.27 16 24 C 0.08 1.03 10.69 127.77 1.37 2.39 16 25 C 0.06 0.16 10.29 127.77 1.31 1.48 16 26 N -0.09 -4.07 12.88 37.02 0.48 -3.60 16 27 N -0.21 -10.72 9.05 -50.01 -0.45 -11.18 16 28 H 0.13 3.30 8.14 -2.38 -0.02 3.28 16 29 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 30 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.12 6.21 6.64 -2.39 -0.02 6.19 16 32 H 0.10 4.51 7.56 -2.39 -0.02 4.49 16 33 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 34 H 0.24 5.69 8.06 -2.91 -0.02 5.67 16 35 H 0.16 1.55 7.40 -2.39 -0.02 1.53 16 36 H 0.18 0.99 8.05 -2.39 -0.02 0.97 16 37 H 0.05 1.14 6.90 -2.39 -0.02 1.12 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.09 0.00 8.07 -2.39 -0.02 -0.02 16 42 H 0.09 -0.07 6.44 -2.39 -0.02 -0.08 16 Total: -1.00 -94.59 364.60 6.44 -88.15 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.07 Total: 12.92 kcal Atomic # 6 Polarization: 57.77 SS G_CDS: 8.89 Total: 66.67 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -5.23 Total: -113.05 kcal Atomic # 8 Polarization: -101.92 SS G_CDS: -0.32 Total: -102.24 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -94.59 6.44 -88.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116110949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.962 kcal (2) G-P(sol) polarization free energy of solvation -94.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds