Wall clock time and date at job start Tue Mar 31 2020 23:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99784 * 2 1 4 4 C 1.50704 * 109.46795 * 293.95195 * 3 2 1 5 5 C 1.38305 * 119.93232 * 269.72625 * 4 3 2 6 6 C 1.38101 * 120.06755 * 179.72713 * 5 4 3 7 7 C 1.38879 * 119.93040 * 0.57274 * 6 5 4 8 8 O 1.35750 * 120.06828 * 179.67916 * 7 6 5 9 9 C 1.34831 * 116.99797 * 174.48194 * 8 7 6 10 10 H 1.08001 * 120.00071 * 5.06489 * 9 8 7 11 11 C 1.38651 * 120.00188 * 185.05811 * 9 8 7 12 12 N 1.31555 * 119.99645 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00331 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46737 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47004 * 120.00047 * 13 11 9 16 16 H 1.48500 * 109.47087 * 240.00135 * 13 11 9 17 17 C 1.38887 * 119.86134 * 359.70188 * 7 6 5 18 18 C 1.38094 * 119.93108 * 0.02562 * 17 7 6 19 19 C 1.46902 * 111.00300 * 123.94988 * 2 1 3 20 20 C 1.52580 * 109.24304 * 305.49358 * 19 2 1 21 21 C 1.52967 * 110.02615 * 190.29128 * 20 19 2 22 22 S 1.81677 * 108.97030 * 296.31632 * 21 20 19 23 23 O 1.42100 * 108.66413 * 299.96892 * 22 21 20 24 24 O 1.42100 * 108.74569 * 168.65636 * 22 21 20 25 25 C 1.81674 * 101.30518 * 54.29862 * 22 21 20 26 26 C 1.52588 * 109.23705 * 66.60681 * 19 2 1 27 27 H 1.08996 * 109.47095 * 296.04837 * 1 2 3 28 28 H 1.09001 * 109.46747 * 56.04996 * 1 2 3 29 29 H 1.08996 * 109.46653 * 176.04514 * 1 2 3 30 30 H 1.08995 * 109.47316 * 53.95165 * 3 2 1 31 31 H 1.09002 * 109.47048 * 173.95589 * 3 2 1 32 32 H 1.08003 * 119.96487 * 359.97438 * 5 4 3 33 33 H 1.07996 * 120.03035 * 180.27103 * 6 5 4 34 34 H 0.97005 * 120.00424 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.03072 * 179.97438 * 17 7 6 36 36 H 1.07998 * 119.96514 * 180.02562 * 18 17 7 37 37 H 1.08999 * 109.23674 * 186.04650 * 19 2 1 38 38 H 1.09008 * 109.38406 * 310.39964 * 20 19 2 39 39 H 1.09003 * 109.38671 * 70.08266 * 20 19 2 40 40 H 1.08994 * 109.56373 * 176.47123 * 21 20 19 41 41 H 1.08998 * 109.64247 * 56.20589 * 21 20 19 42 42 H 1.08998 * 109.54369 * 185.84169 * 25 22 21 43 43 H 1.09000 * 109.62669 * 65.60681 * 25 22 21 44 44 H 1.09001 * 109.38779 * 289.90964 * 26 19 2 45 45 H 1.08997 * 109.38895 * 49.70469 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 2.4979 1.9688 -2.3780 6 6 2.1696 2.5821 -3.5710 7 6 0.9788 3.2881 -3.6824 8 8 0.6563 3.8975 -4.8518 9 6 -0.5630 4.4678 -4.9288 10 1 -1.2008 4.4986 -4.0577 11 6 -0.9981 5.0150 -6.1262 12 7 -0.2213 4.9772 -7.1872 13 14 -2.6871 5.8059 -6.2327 14 1 -3.3584 5.7191 -4.9110 15 1 -2.5424 7.2315 -6.6224 16 1 -3.5032 5.0951 -7.2496 17 6 0.1189 3.3697 -2.5948 18 6 0.4503 2.7495 -1.4063 19 6 1.9955 -0.7659 1.1376 20 6 1.3949 -0.2226 2.4307 21 6 2.1150 -0.8272 3.6373 22 16 1.8334 -2.6219 3.6548 23 8 0.4360 -2.8620 3.7496 24 8 2.7066 -3.2119 4.6080 25 6 2.3914 -3.0862 1.9895 26 6 1.6417 -2.2393 0.9586 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3632 -1.0252 -0.0709 30 1 1.5611 1.9274 0.8308 31 1 3.0797 1.3445 0.1082 32 1 3.4263 1.4240 -2.2891 33 1 2.8404 2.5168 -4.4148 34 1 -0.5255 5.3603 -8.0249 35 1 -0.8076 3.9183 -2.6783 36 1 -0.2181 2.8122 -0.5604 37 1 3.0797 -0.6584 1.1720 38 1 1.5032 0.8619 2.4522 39 1 0.3366 -0.4799 2.4743 40 1 1.7229 -0.3875 4.5543 41 1 3.1839 -0.6265 3.5645 42 1 2.1823 -4.1418 1.8160 43 1 3.4628 -2.9070 1.8991 44 1 0.5682 -2.3726 1.0928 45 1 1.9235 -2.5599 -0.0444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137120354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:45 Heat of formation + Delta-G solvation = -63.698941 kcal Electronic energy + Delta-G solvation = -27052.948516 eV Core-core repulsion = 23163.736657 eV Total energy + Delta-G solvation = -3889.211859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -39.78506 -38.84372 -37.37479 -36.68080 -36.39548 -34.39138 -32.33009 -32.31011 -30.24394 -30.04657 -27.45393 -26.56108 -25.32383 -24.20264 -23.18112 -21.97236 -20.60817 -20.05070 -19.19787 -18.01935 -17.35578 -16.97582 -16.79035 -16.32788 -16.04694 -15.40649 -15.10830 -14.70999 -14.57804 -14.19502 -14.18223 -13.96416 -13.61759 -13.43473 -13.30148 -13.26783 -12.79525 -12.73794 -12.53684 -12.39082 -12.33858 -12.21792 -11.96301 -11.80338 -11.69834 -11.47046 -11.33255 -11.21138 -11.01400 -10.77809 -10.64220 -10.59296 -10.45426 -10.43451 -9.36777 -8.87745 -8.41029 -8.19717 -7.21819 -6.48688 -4.07561 -0.38354 2.17814 2.21910 2.25130 3.09069 3.11099 3.16543 3.24613 3.42751 3.83110 3.93457 4.06456 4.11386 4.24256 4.42140 4.49806 4.58392 4.76160 4.83173 5.01069 5.06173 5.11336 5.19136 5.21675 5.25422 5.35430 5.38726 5.46866 5.54038 5.64410 5.71591 5.73680 5.80585 5.83703 6.07275 6.17471 6.37864 6.66143 6.84472 6.88209 6.95789 7.06133 7.22626 7.34469 7.40767 7.78778 7.96307 8.97072 9.67052 10.69309 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.002031 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.847217 B =13784.674736 C =14138.599907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.521 5.521 3 C 0.110 3.890 4 C -0.181 4.181 5 C -0.052 4.052 6 C -0.195 4.195 7 C 0.156 3.844 8 O -0.178 6.178 9 C -0.391 4.391 10 H 0.092 0.908 11 C 0.039 3.961 12 N -0.862 5.862 13 Si 0.941 3.059 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.235 4.235 18 C -0.064 4.064 19 C 0.065 3.935 20 C -0.149 4.149 21 C -0.597 4.597 22 S 2.412 3.588 23 O -0.937 6.937 24 O -0.947 6.947 25 C -0.598 4.598 26 C -0.104 4.104 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.270 0.730 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.084 0.916 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 -12.143 19.081 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.244 5.244 3 C -0.017 4.017 4 C -0.183 4.183 5 C -0.071 4.071 6 C -0.214 4.214 7 C 0.102 3.898 8 O -0.081 6.081 9 C -0.468 4.468 10 H 0.110 0.890 11 C -0.166 4.166 12 N -0.497 5.497 13 Si 0.766 3.234 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.254 4.254 18 C -0.083 4.083 19 C -0.044 4.044 20 C -0.189 4.189 21 C -0.727 4.727 22 S 2.594 3.406 23 O -0.934 6.934 24 O -0.944 6.944 25 C -0.728 4.728 26 C -0.143 4.143 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.103 0.897 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.810 -12.790 18.856 23.287 hybrid contribution -0.782 1.333 0.128 1.551 sum 4.027 -11.457 18.985 22.537 Atomic orbital electron populations 1.22605 0.87251 1.02466 1.01572 1.62314 1.08465 1.14358 1.39215 1.20878 0.99278 0.86697 0.94812 1.19004 0.97594 1.06030 0.95647 1.20438 0.98002 0.96951 0.91698 1.20218 0.97843 1.04588 0.98739 1.19408 0.93105 0.90453 0.86807 1.83981 1.34232 1.60768 1.29099 1.21365 0.90998 1.36444 0.97959 0.89033 1.25296 0.99709 0.97330 0.94218 1.70046 1.36299 1.42333 1.00975 0.85647 0.80215 0.78734 0.78828 1.19123 1.20141 1.20112 1.21123 1.02642 1.07844 0.93793 1.20581 0.95240 0.96124 0.96376 1.21927 1.00621 0.93450 0.88433 1.22087 1.01016 1.03495 0.92270 1.30136 1.10546 1.24796 1.07210 1.08212 0.75839 0.78644 0.77910 1.93594 1.30115 1.83763 1.85922 1.93595 1.67918 1.74870 1.58019 1.30183 1.11541 1.10402 1.20687 1.21330 1.00474 0.92276 1.00197 0.95295 0.89849 0.91378 0.94598 0.90761 0.87131 0.86602 0.92040 0.85665 0.87954 0.88980 0.89126 0.89315 0.84871 0.84834 0.84551 0.84722 0.89734 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.46 60.07 0.51 0.60 16 2 N -0.52 -5.40 4.69 -236.84 -1.11 -6.51 16 3 C 0.11 1.25 4.69 -4.97 -0.02 1.23 16 4 C -0.18 -2.80 4.89 -104.57 -0.51 -3.31 16 5 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 6 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 7 C 0.16 3.66 6.65 -39.10 -0.26 3.40 16 8 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 9 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 10 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 11 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 12 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 13 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 15 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 17 C -0.23 -4.87 9.17 -39.39 -0.36 -5.23 16 18 C -0.06 -1.09 7.89 -39.61 -0.31 -1.40 16 19 C 0.06 0.48 1.94 -68.14 -0.13 0.34 16 20 C -0.15 -0.99 4.06 -26.96 -0.11 -1.10 16 21 C -0.60 -3.02 6.35 37.14 0.24 -2.79 16 22 S 2.41 17.00 5.30 -107.50 -0.57 16.43 16 23 O -0.94 -10.03 17.94 -57.82 -1.04 -11.07 16 24 O -0.95 -9.94 18.11 -57.82 -1.05 -10.99 16 25 C -0.60 -2.94 6.35 37.18 0.24 -2.71 16 26 C -0.10 -0.69 4.67 -26.92 -0.13 -0.81 16 27 H 0.03 0.27 6.43 -51.93 -0.33 -0.06 16 28 H 0.08 1.08 5.89 -51.93 -0.31 0.77 16 29 H 0.07 0.64 6.70 -51.93 -0.35 0.30 16 30 H 0.04 0.38 6.75 -51.93 -0.35 0.03 16 31 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 32 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 36 H 0.10 1.48 7.98 -52.49 -0.42 1.06 16 37 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 38 H 0.09 0.61 6.46 -51.92 -0.34 0.28 16 39 H 0.09 0.63 6.79 -51.93 -0.35 0.27 16 40 H 0.13 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.58 6.91 -51.93 -0.36 0.22 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -35.12 365.73 -10.24 -45.36 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.28 Total: 2.14 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -1.44 Total: -26.87 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: -0.35 Total: -30.72 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -2.08 Total: -27.03 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 17.00 SS G_CDS: -0.57 Total: 16.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.12 -10.24 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.343 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds